M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_20317

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_20317 34 0.71 Mlig455_035151

Neo: -

Age: -

 TP53I11 Mlig455_035151 {REF} {Length: 1180} {Pfam: Tumour protein p53-inducible protein 11 [PF14936.8, score=114.0]} {Human: ENSG00000175274, TP53I11, tumor protein p53 inducible protein 11, [Score=92.4, Expect=2e-23]} {Mouse: ENSMUSG00000068735, Trp53i11, transformation related protein 53 inducible protein 11, [Score=90.5, Expect=2e-22]} {Celegans: WBGene00021185, Y9C12A.1, [Score=80.1, Expect=4e-18]} {RNA1310_126850}

Cumulative graph for MligTC455_20317

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.382 1.09 1.00000 1.00000
RegionR2 0.869 1.09 0.98041 1.00000
RegionR3 -1.599 1.09 1.00000 1.00000
RegionR4 0.745 1.09 0.41625 0.74364
RegionR5 1.504 1.09 0.46913 0.83167
RegionR6 -0.285 1.09 0.92219 1.00000
RegionR7 -1.606 1.09 1.00000 1.00000
RegionR8 -0.01 1.09 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.225 1.09 1.00000 1.00000
RegenerationR2 0.436 1.09 0.73991 0.96975
RegenerationR3 -0.598 1.09 0.90291 1.00000
RegenerationR4 0.833 1.09 0.86730 1.00000
RegenerationR5 0.543 1.09 0.89482 1.00000
RegenerationR6 0.133 1.09 0.68943 0.91881
RegenerationBL -2.778 1.09 1.00000 1.00000
RegenerationTP -1.653 1.09 1.00000 1.00000


Genes with expression patterns similar to MligTC455_20317

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_20317 34 0.71 Mlig455_035151

Neo: -

Age: -

 TP53I11 3 - - 1.000 - 1.000 1.000 Mlig455_035151 {REF} {Length: 1180} {Pfam: Tumour protein p53-inducible protein 11 [PF14936.8, score=114.0]} {Human: ENSG00000175274, TP53I11, tumor protein p53 inducible protein 11, [Score=92.4, Expect=2e-23]} {Mouse: ENSMUSG00000068735, Trp53i11, transformation related protein 53 inducible protein 11, [Score=90.5, Expect=2e-22]} {Celegans: WBGene00021185, Y9C12A.1, [Score=80.1, Expect=4e-18]} {RNA1310_126850}
2. MligTC455_42831 85 1.77 Mlig455_039919, Mlig455_041211, Mlig455_041225

Neo: -

Age: -

 BCL11A 1.803 - - 0.846 - - 0.957

Mlig455_039919 {REF} {Length: 2448} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=48.7]; C2H2-type zinc finger [PF13894.8, score=30.4]; Zinc-finger double domain [PF13465.8, score=28.8]; C2H2-type zinc-finger domain [PF13909.8, score=19.3]} {Human: ENSG00000119866, BCL11A, B cell CLL/lymphoma 11A, [Score=152, Expect=6e-39]; ENSG00000127152, BCL11B, B cell CLL/lymphoma 11B, [Score=151, Expect=6e-39]} {Mouse: ENSMUSG00000000861, Bcl11a, B cell CLL/lymphoma 11A (zinc finger protein), [Score=152, Expect=4e-39]; ENSMUSG00000048251, Bcl11b, B cell leukemia/lymphoma 11B, [Score=151, Expect=4e-39]} {Dmel: FBgn0029939, CG9650, [Score=153, Expect=1e-39]} {Celegans: WBGene00017430, bcl-11, Mammalian BCL (B cell lymphoma) gene homologs, [RH, Score=131, Expect=1e-32]} {Smed: dd_Smed_v6_13341_0_1, dd_Smed_v6_13341_0_1, [Score=159, Expect=8e-43]} {RNA1509_16620} {RNA1310_48848} {RNA815_19660}

Mlig455_041211 {REF} {Length: 2991} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=48.7]; C2H2-type zinc finger [PF13894.8, score=30.4]; Zinc-finger double domain [PF13465.8, score=28.8]; C2H2-type zinc-finger domain [PF13909.8, score=19.3]} {Human: ENSG00000119866, BCL11A, B cell CLL/lymphoma 11A, [Score=152, Expect=6e-39]; ENSG00000127152, BCL11B, B cell CLL/lymphoma 11B, [Score=151, Expect=6e-39]} {Mouse: ENSMUSG00000000861, Bcl11a, B cell CLL/lymphoma 11A (zinc finger protein), [Score=152, Expect=4e-39]; ENSMUSG00000048251, Bcl11b, B cell leukemia/lymphoma 11B, [Score=151, Expect=4e-39]} {Dmel: FBgn0029939, CG9650, [Score=153, Expect=1e-39]} {Celegans: WBGene00017430, bcl-11, Mammalian BCL (B cell lymphoma) gene homologs, [RH, Score=131, Expect=1e-32]} {Smed: dd_Smed_v6_13341_0_1, dd_Smed_v6_13341_0_1, [Score=159, Expect=8e-43]} {RNA1509_16620} {RNA1310_48848} {RNA815_19660}

Mlig455_041225 {REF} {Length: 3047} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=48.7]; C2H2-type zinc finger [PF13894.8, score=30.4]; Zinc-finger double domain [PF13465.8, score=28.8]; C2H2-type zinc-finger domain [PF13909.8, score=19.3]} {Human: ENSG00000119866, BCL11A, B cell CLL/lymphoma 11A, [Score=152, Expect=6e-39]; ENSG00000127152, BCL11B, B cell CLL/lymphoma 11B, [Score=151, Expect=6e-39]} {Mouse: ENSMUSG00000000861, Bcl11a, B cell CLL/lymphoma 11A (zinc finger protein), [Score=152, Expect=4e-39]; ENSMUSG00000048251, Bcl11b, B cell leukemia/lymphoma 11B, [Score=151, Expect=4e-39]} {Dmel: FBgn0029939, CG9650, [Score=153, Expect=1e-39]} {Celegans: WBGene00017430, bcl-11, Mammalian BCL (B cell lymphoma) gene homologs, [RH, Score=131, Expect=1e-32]} {Smed: dd_Smed_v6_13341_0_1, dd_Smed_v6_13341_0_1, [Score=159, Expect=8e-43]} {RNA1509_16620} {RNA1310_48848} {RNA815_19660}
3. MligTC455_18537 65 1.35 Mlig455_003032

Neo: -

Age: Up-Down-Up

 0.978 - - - - - 0.978 Mlig455_003032 {REF} {Length: 1952} {TRANSSPLICED} {RNA1509_26065} {RNA1310_25777} {RNA815_10492}
4. MligTC455_02975 125 2.61 Mlig455_022830, Mlig455_022831, Mlig455_031047, Mlig455_031054

Neo: -

Age: -

 0.96 - - - - 0.960 -

Mlig455_022830 {REF} {Length: 2561} {RNA1509_43679} {RNA1310_39376} {RNA815_22872.1}

Mlig455_022831 {REF} {Length: 1042} {NoTransDecoderORF} {RNA1509_48098} {RNA1310_55996} {RNA815_6533.1}

Mlig455_031047 {REF} {Length: 2122} {NoTransDecoderORF} {RNA1509_42928} {RNA1310_37500} {RNA815_25813.2}

Mlig455_031054 {REF} {Length: 7970} {RNA1509_42928, RNA1509_48098} {RNA1310_31923, RNA1509_48098} {RNA1509_48098, RNA815_22872.1}
5. MligTC455_28787 30 0.62 Mlig455_043846, Mlig455_054188, Mlig455_060734

Neo: -

Age: logFC(26M/2M)=-0.737

 ANKRD50 0.953 - - - - 0.953 -

Mlig455_043846 {REF} {Length: 665} {Pfam: DDE superfamily endonuclease [PF13358.8, score=23.1]} {Smed: dd_Smed_v6_42273_0_1, dd_Smed_v6_42273_0_1, [RH, Score=43.1, Expect=6e-06]}

Mlig455_054188 {REF} {Length: 3683} {Pfam: Mab-21 protein [PF03281.16, score=27.1]} {RNA1509_27730} {RNA1310_30964} {RNA815_2387.1}

Mlig455_060734 {REF} {Length: 6592} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=88.1]; Ankyrin repeats (many copies) [PF13637.8, score=65.2]; Ankyrin repeats (many copies) [PF13857.8, score=58.9]; Ankyrin repeat [PF13606.8, score=53.0]; Ankyrin repeat [PF00023.32, score=41.3]; Mab-21 protein [PF03281.16, score=25.4]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=86.3, Expect=3e-16]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=89.7, Expect=2e-17]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=74.7, Expect=6e-13]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=71.6, Expect=3e-12]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=84.0, Expect=4e-16]} {RNA1509_27730} {RNA1310_24666.1} {RNA815_2426.1}
6. MligTC455_30435 177 3.69 Mlig455_005918, Mlig455_019586, Mlig455_031986, Mlig455_068070

Neo: -

Age: -

 0.953 - - - - 0.953 -

Mlig455_005918 {REF} {Length: 324} {NoTransDecoderORF} {RNA1509_11239} {RNA1310_7897.2} {RNA815_2064.1}

Mlig455_019586 {REF} {Length: 554} {NoTransDecoderORF} {RNA1509_11239} {RNA1310_50394} {RNA815_2064.1}

Mlig455_031986 {REF} {Length: 317} {NoTransDecoderORF} {RNA1509_11239} {RNA1310_50394} {RNA815_2064.1}

Mlig455_068070 {REF} {Length: 654} {NoTransDecoderORF} {RNA1509_11239} {RNA1310_50394} {RNA815_2064.1}
7. MligTC455_43190 251 5.23 Mlig455_062279

Neo: -

Age: logFC(26M/2M)=1.774

 0.953 - - 0.953 - - - Mlig455_062279 {REF} {Length: 435} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_17845} {RNA1310_65602} {RNA815_45469}
8. MligTC455_41934 45 0.94 Mlig455_034117

Neo: -

Age: Down-Down-Up

 KIAA0825 0.952 - - - - 0.952 - Mlig455_034117 {REF} {Length: 4856} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4495) [PF14906.8, score=176.5]} {Human: ENSG00000185261, KIAA0825, KIAA0825, [RH, Score=122, Expect=2e-27]} {Mouse: ENSMUSG00000071252, 2210408I21Rik, RIKEN cDNA 2210408I21 gene, [RH, Score=124, Expect=5e-28]} {Dmel: FBgn0036859, CG14085, [RH, Score=90.9, Expect=5e-18]} {Smed: dd_Smed_v6_9819_0_1, dd_Smed_v6_9819_0_1, [RH, Score=209, Expect=8e-55]} {RNA1509_22399} {RNA1310_1594.1, RNA1509_22399} {RNA1509_22399, RNA815_11157}
9. MligTC455_27488 79 1.65 Mlig455_006237

Neo: -

Age: Down-Up-Down

 ANKRD17 0.951 - - 0.951 - - - Mlig455_006237 {REF} {Length: 4623} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=203.3]; Ankyrin repeats (many copies) [PF13637.8, score=140.3]; Ankyrin repeat [PF13606.8, score=112.1]; Ankyrin repeat [PF00023.32, score=88.7]; Ankyrin repeats (many copies) [PF13857.8, score=87.3]; Mab-21 protein [PF03281.16, score=42.5]; Transcription factor BRX N-terminal domain [PF13713.8, score=27.4]} {Human: ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=134, Expect=4e-31]} {Mouse: ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=135, Expect=2e-31]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=99.0, Expect=2e-20]} {Celegans: WBGene00012124, T28D6.4, [Score=92.8, Expect=7e-19]} {Smed: dd_Smed_v6_5303_0_2, dd_Smed_v6_5303_0_2, [Score=127, Expect=2e-29]} {RNA1509_27730, RNA1509_51137} {RNA1310_4721, RNA1509_51137} {RNA1509_51137, RNA815_2426.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA