Data search
Results for MligTC455_20378
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_20378 | 283 | 5.89 | Mlig455_006456 | Neo: - Age: Down-Down-Up |
SCAMP1 | Mlig455_006456 {REF} {Length: 1981} {Pfam: SCAMP family [PF04144.15, score=199.7]} {Human: ENSG00000085365, SCAMP1, secretory carrier membrane protein 1, [Score=269, Expect=7e-88]} {Mouse: ENSMUSG00000021687, Scamp1, secretory carrier membrane protein 1, [Score=270, Expect=2e-88]} {Dmel: FBgn0040285, Scamp, [Score=245, Expect=7e-79]} {Celegans: WBGene00004743, scm-1, Secretory carrier-associated membrane protein, [Score=192, Expect=1e-58]} {Smed: dd_Smed_v6_8593_0_1, dd_Smed_v6_8593_0_1, [Score=235, Expect=8e-76]} {RNA1509_10501, RNA1509_18960, RNA1509_19023, RNA1509_54557} {RNA1310_13199, RNA1509_10501, RNA1509_18960, RNA1509_19023, RNA1509_54557} {RNA1509_10501, RNA1509_18960, RNA1509_19023, RNA1509_54557, RNA815_4770.1} |
Cumulative graph for MligTC455_20378
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.806 | 2.897 | 0.62265 | 1.00000 | |
| RegionR2 | -1.84 | 2.897 | 0.02749 | 0.18666 | |
| RegionR3 | -1.855 | 2.897 | 0.02767 | 0.28402 | |
| RegionR4 | 2.195 | 2.897 | 0.02474 | 0.11843 | |
| RegionR5 | 1.444 | 2.897 | 0.02815 | 0.12392 | |
| RegionR6 | 0.877 | 2.897 | 0.18059 | 0.74462 | |
| RegionR7 | -0.357 | 2.897 | 0.72719 | 1.00000 | |
| RegionR8 | 0.342 | 2.897 | 0.75885 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 1.212 | 2.897 | 0.57287 | 1.00000 | |
| RegenerationR2 | 0.143 | 2.897 | 0.84298 | 1.00000 | |
| RegenerationR3 | 1.185 | 2.897 | 0.19470 | 0.63033 | |
| RegenerationR4 | 0.793 | 2.897 | 0.34328 | 0.77440 | |
| RegenerationR5 | -0.404 | 2.897 | 0.56608 | 0.89448 | |
| RegenerationR6 | -0.764 | 2.897 | 0.31721 | 0.66449 | |
| RegenerationBL | -0.6 | 2.897 | 0.51163 | 0.87497 | |
| RegenerationTP | 0.564 | 2.897 | 0.56522 | 0.94178 |
Genes with expression patterns similar to MligTC455_20378
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_20378 | 283 | 5.89 | Mlig455_006456 | Neo: - Age: Down-Down-Up |
SCAMP1 | 5 | 1.000 | - | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_006456 {REF} {Length: 1981} {Pfam: SCAMP family [PF04144.15, score=199.7]} {Human: ENSG00000085365, SCAMP1, secretory carrier membrane protein 1, [Score=269, Expect=7e-88]} {Mouse: ENSMUSG00000021687, Scamp1, secretory carrier membrane protein 1, [Score=270, Expect=2e-88]} {Dmel: FBgn0040285, Scamp, [Score=245, Expect=7e-79]} {Celegans: WBGene00004743, scm-1, Secretory carrier-associated membrane protein, [Score=192, Expect=1e-58]} {Smed: dd_Smed_v6_8593_0_1, dd_Smed_v6_8593_0_1, [Score=235, Expect=8e-76]} {RNA1509_10501, RNA1509_18960, RNA1509_19023, RNA1509_54557} {RNA1310_13199, RNA1509_10501, RNA1509_18960, RNA1509_19023, RNA1509_54557} {RNA1509_10501, RNA1509_18960, RNA1509_19023, RNA1509_54557, RNA815_4770.1} |
| 2. | MligTC455_20931 | 755 | 15.73 | Mlig455_013093 | Neo: Germline Age: logFC(26M/2M)=-0.370 Region-specific R4: 6.085 Region-enriched R4: 4.400/0.00000 |
0.964 | - | - | - | - | 0.964 | - | Mlig455_013093 {REF} {Length: 1539} {RNA1509_18152, RNA1509_2086, RNA1509_27740} {RNA1310_29667, RNA1509_18152, RNA1509_2086, RNA1509_27740} {RNA1509_18152, RNA1509_2086, RNA1509_27740, RNA815_14169} | |
| 3. | MligTC455_39816 | 1716 | 35.75 | Mlig455_033778 | Neo: - Age: - |
G3BP2 | 0.962 | - | - | 0.962 | - | - | - | Mlig455_033778 {REF} {Length: 2268} {TRANSSPLICED} {Pfam: Nuclear transport factor 2 (NTF2) domain [PF02136.22, score=84.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=46.0]; RNA recognition motif [PF16367.7, score=20.2]} {Human: ENSG00000138757, G3BP2, G3BP stress granule assembly factor 2, [RH, Score=130, Expect=1e-32]; ENSG00000145907, G3BP1, G3BP stress granule assembly factor 1, [RH, Score=124, Expect=2e-30]} {Mouse: ENSMUSG00000029405, G3bp2, GTPase activating protein (SH3 domain) binding protein 2, [RH, Score=130, Expect=1e-32]} {Dmel: FBgn0015778, rin, rasputin, [Score=130, Expect=2e-32]} {Celegans: WBGene00010677, gtbp-1, Ras-Gtpase-activating protein SH3 (Three) domain-Binding Protein, [RH, Score=65.5, Expect=3e-11]} {Smed: dd_Smed_v6_316_0_1, dd_Smed_v6_316_0_1, [Score=132, Expect=2e-34]} {RNA1509_3318, RNA1509_44632} {RNA1310_6247, RNA1509_3318, RNA1509_44632} {RNA1509_3318, RNA1509_44632, RNA815_17026} |
| 4. | MligTC455_23645 | 231 | 4.81 | Mlig455_043154 | Neo: - Age: - |
0.96 | - | - | 0.960 | - | - | - | Mlig455_043154 {REF} {Length: 3840} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=39.4]} {Smed: dd_Smed_v6_7378_0_1, dd_Smed_v6_7378_0_1, [RH, Score=54.3, Expect=1e-08]} {RNA1509_13710} {RNA1310_7068} {RNA815_10709} | |
| 5. | MligTC455_44632 | 1816 | 37.84 | Mlig455_056991 | Neo: - Age: Down-Down-Up |
SNRNP70 | 0.955 | - | - | 0.955 | - | - | - | Mlig455_056991 {REF} {Length: 1588} {TRANSSPLICED} {Pfam: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal [PF12220.10, score=92.9]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=67.0]} {Human: ENSG00000104852, SNRNP70, small nuclear ribonucleoprotein U1 subunit 70, [RH, Score=238, Expect=1e-75]} {Mouse: ENSMUSG00000063511, Snrnp70, small nuclear ribonucleoprotein 70 (U1), [RH, Score=216, Expect=5e-67]} {Dmel: FBgn0016978, snRNP-U1-70K, small ribonucleoprotein particle U1 subunit 70K, [RH, Score=247, Expect=3e-79]} {Celegans: WBGene00004390, rnp-7, RNP (RRM RNA binding domain) containing, [RH, Score=242, Expect=7e-79]} {Smed: dd_Smed_v6_633_0_1, dd_Smed_v6_633_0_1, [RH, Score=316, Expect=9e-108]} {RNA1509_21253, RNA1509_5559} {RNA1310_15983, RNA1509_21253, RNA1509_5559} {RNA1509_21253, RNA1509_5559, RNA815_2161.1} |
| 6. | MligTC455_35542 | 718 | 14.96 | Mlig455_038234 | Neo: Irradiation Age: Up-Down-Down Region-specific R4: 5.461 Region-enriched R4: 2.806/0.00646 |
PRKAR2A | 0.953 | - | - | - | - | 0.953 | - | Mlig455_038234 {REF} {Length: 1630} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=125.8]} {Human: ENSG00000114302, PRKAR2A, protein kinase cAMP-dependent type II regulatory subunit alpha, [Score=134, Expect=3e-35]} {Mouse: ENSMUSG00000032601, Prkar2a, protein kinase, cAMP dependent regulatory, type II alpha, [Score=139, Expect=4e-37]} {Dmel: FBgn0022382, Pka-R2, Protein kinase, cAMP-dependent, regulatory subunit type 2, [Score=144, Expect=1e-39]} {Celegans: WBGene00002190, kin-2, cAMP-dependent protein kinase regulatory subunit, [Score=114, Expect=1e-28]} {Smed: dd_Smed_v6_2902_0_1, dd_Smed_v6_2902_0_1, [Score=142, Expect=4e-39]} {RNA1509_17398, RNA1509_4974} {RNA1310_14546, RNA1509_17398, RNA1509_4974} {RNA1509_17398, RNA1509_4974, RNA815_10420} |
| 7. | MligTC455_51425 | 7476 | 155.75 | Mlig455_022033 | Neo: - Age: Down-Up-Down |
CALM2 | 0.953 | - | - | 0.953 | - | - | - | Mlig455_022033 {REF} {Length: 2160} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=141.5]; EF-hand domain pair [PF13499.8, score=125.9]; EF-hand domain pair [PF13833.8, score=108.2]; EF-hand domain [PF13405.8, score=98.7]; EF hand [PF13202.8, score=95.3]; EF-hand domain [PF14658.8, score=61.9]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=40.9]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=32.1]; EF-hand domain [PF08976.13, score=28.8]; Uncharacterised protein family (UPF0154) [PF03672.15, score=23.7]; Ca2+ insensitive EF hand [PF08726.12, score=21.4]; Dockerin type I domain [PF00404.20, score=21.1]; Caleosin related protein [PF05042.15, score=18.8]; Repeat of unknown function (DUF1103) [PF06513.13, score=18.5]} {Human: ENSG00000143933, CALM2, calmodulin 2, [RH, Score=295, Expect=2e-103]; ENSG00000198668, CALM1, calmodulin 1, [RH, Score=293, Expect=2e-103]; ENSG00000160014, CALM3, calmodulin 3, [RH, Score=291, Expect=2e-102]} {Mouse: ENSMUSG00000019370, Calm3, calmodulin 3, [RH, Score=291, Expect=1e-102]; ENSMUSG00000036438, Calm2, calmodulin 2, [RH, Score=291, Expect=1e-102]; ENSMUSG00000001175, Calm1, calmodulin 1, [RH, Score=291, Expect=1e-102]} {Dmel: FBgn0000253, Cam, Calmodulin, [RH, Score=294, Expect=4e-104]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [RH, Score=295, Expect=1e-104]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [RH, Score=295, Expect=8e-105]} {RNA1509_10228, RNA1509_17166, RNA1509_22818, RNA1509_34197} {RNA1310_22130, RNA1509_17166, RNA1509_22818, RNA1509_34197} {RNA1509_17166, RNA1509_22818, RNA1509_34197, RNA815_4214.1} |
| 8. | MligTC455_18975 | 286 | 5.97 | Mlig455_059132 | Neo: Germline Age: - Region-enriched R4: 3.652/0.00001 |
0.951 | - | - | - | - | 0.951 | - | Mlig455_059132 {REF} {Length: 1515} {RNA1509_35598} {RNA1310_23207.1} {RNA815_10106} | |
| 9. | MligTC455_19799 | 563 | 11.73 | Mlig455_031983 | Neo: Irradiation Age: - Region-specific R4: 5.056 Region-enriched R4: 2.861/0.00007 |
CSNK1G3 | 0.951 | - | - | - | - | 0.951 | - | Mlig455_031983 {REF} {Length: 2789} {Human: ENSG00000151292, CSNK1G3, casein kinase 1 gamma 3, [Score=55.8, Expect=7e-08]} {Mouse: ENSMUSG00000073563, Csnk1g3, casein kinase 1, gamma 3, [Score=55.5, Expect=1e-07]} {Celegans: WBGene00015629, C09B9.4, [Score=56.6, Expect=2e-08]} {Smed: dd_Smed_v6_16169_0_1, dd_Smed_v6_16169_0_1, [Score=62.8, Expect=1e-10]} {RNA1509_47453} {RNA1310_6935.1, RNA1509_47453} {RNA1509_47453, RNA815_4346} |
| 10. | MligTC455_10609 | 172 | 3.59 | Mlig455_021290 | Neo: Germline Age: logFC(26M/2M)=0.388 |
0.95 | - | - | - | - | 0.950 | - | Mlig455_021290 {REF} {Length: 586} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=25.1]} {RNA1509_19304, RNA1509_39102} {RNA1310_62512, RNA1509_39102} {RNA1509_39102, RNA815_32773} |
Berezikov Lab - 2020-2021 © ERIBA