TomoSeq data search

Data search

Results for MligTC455_20397

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_20397	106	2.22	Mlig455_024607	Neo: - Age: -	ITGA2B	Mlig455_024607 {REF} {Length: 6328} {Pfam: FG-GAP repeat [PF01839.25, score=85.9]; Integrin alpha [PF08441.14, score=85.0]; FG-GAP-like repeat [PF13517.8, score=36.2]} {Human: ENSG00000005961, ITGA2B, integrin subunit alpha 2b, [RH, Score=166, Expect=2e-41]; ENSG00000161638, ITGA5, integrin subunit alpha 5, [RH, Score=160, Expect=3e-39]} {Mouse: ENSMUSG00000000555, Itga5, integrin alpha 5 (fibronectin receptor alpha), [RH, Score=166, Expect=3e-41]; ENSMUSG00000034664, Itga2b, integrin alpha 2b, [RH, Score=158, Expect=8e-39]} {Dmel: FBgn0001250, if, inflated, [RH, Score=162, Expect=7e-40]} {Celegans: WBGene00002081, ina-1, Integrin alpha ina-1, [RH, Score=155, Expect=4e-38]} {Smed: dd_Smed_v6_11655_0_1, dd_Smed_v6_11655_0_1, [RH, Score=288, Expect=7e-81]} {RNA1509_32784} {RNA1310_1729.1, RNA1509_32784} {RNA1509_32784, RNA815_13097.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_20397

106

2.22

Mlig455_024607

Neo: -

Age: -

ITGA2B

Mlig455_024607 {REF} {Length: 6328} {Pfam: FG-GAP repeat [PF01839.25, score=85.9]; Integrin alpha [PF08441.14, score=85.0]; FG-GAP-like repeat [PF13517.8, score=36.2]} {Human: ENSG00000005961, ITGA2B, integrin subunit alpha 2b, [RH, Score=166, Expect=2e-41]; ENSG00000161638, ITGA5, integrin subunit alpha 5, [RH, Score=160, Expect=3e-39]} {Mouse: ENSMUSG00000000555, Itga5, integrin alpha 5 (fibronectin receptor alpha), [RH, Score=166, Expect=3e-41]; ENSMUSG00000034664, Itga2b, integrin alpha 2b, [RH, Score=158, Expect=8e-39]} {Dmel: FBgn0001250, if, inflated, [RH, Score=162, Expect=7e-40]} {Celegans: WBGene00002081, ina-1, Integrin alpha ina-1, [RH, Score=155, Expect=4e-38]} {Smed: dd_Smed_v6_11655_0_1, dd_Smed_v6_11655_0_1, [RH, Score=288, Expect=7e-81]} {RNA1509_32784} {RNA1310_1729.1, RNA1509_32784} {RNA1509_32784, RNA815_13097.1}

Cumulative graph for MligTC455_20397

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-4.257	1.972	0.41695	1.00000
RegionR2	1.307	1.972	0.25920	0.63996
RegionR3	0.303	1.972	0.72539	1.00000
RegionR4	-0.229	1.972	0.92042	1.00000
RegionR5	-0.212	1.972	0.91439	1.00000
RegionR6	0.454	1.972	0.64809	1.00000
RegionR7	1.662	1.972	0.14033	0.70080
RegionR8	0.972	1.972	0.49522	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.775	1.972	0.99993	1.00000
RegenerationR2	-1.1	1.972	0.19540	0.64023
RegenerationR3	0.786	1.972	0.36978	0.78395
RegenerationR4	0.458	1.972	0.62546	0.92200
RegenerationR5	0.329	1.972	0.66994	0.94065
RegenerationR6	0.596	1.972	0.49345	0.80101
RegenerationBL	-0.031	1.972	0.99117	1.00000
RegenerationTP	0.485	1.972	0.63574	0.98122

Genes with expression patterns similar to MligTC455_20397

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_20397	106	2.22	Mlig455_024607	Neo: - Age: -	ITGA2B	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_024607 {REF} {Length: 6328} {Pfam: FG-GAP repeat [PF01839.25, score=85.9]; Integrin alpha [PF08441.14, score=85.0]; FG-GAP-like repeat [PF13517.8, score=36.2]} {Human: ENSG00000005961, ITGA2B, integrin subunit alpha 2b, [RH, Score=166, Expect=2e-41]; ENSG00000161638, ITGA5, integrin subunit alpha 5, [RH, Score=160, Expect=3e-39]} {Mouse: ENSMUSG00000000555, Itga5, integrin alpha 5 (fibronectin receptor alpha), [RH, Score=166, Expect=3e-41]; ENSMUSG00000034664, Itga2b, integrin alpha 2b, [RH, Score=158, Expect=8e-39]} {Dmel: FBgn0001250, if, inflated, [RH, Score=162, Expect=7e-40]} {Celegans: WBGene00002081, ina-1, Integrin alpha ina-1, [RH, Score=155, Expect=4e-38]} {Smed: dd_Smed_v6_11655_0_1, dd_Smed_v6_11655_0_1, [RH, Score=288, Expect=7e-81]} {RNA1509_32784} {RNA1310_1729.1, RNA1509_32784} {RNA1509_32784, RNA815_13097.1}
2.	MligTC455_12648	44	0.92	Mlig455_060492	Neo: Int S/G2/M Age: -		0.972	-	-	0.972	-	-	-	Mlig455_060492 {REF} {Length: 1521} {NoTransDecoderORF} {RNA1310_65147}
3.	MligTC455_19929	66	1.37	Mlig455_019374	Neo: Int S/G2/M Age: -		0.971	-	-	0.971	-	-	-	Mlig455_019374 {REF} {Length: 1484} {TRANSSPLICED} {Pfam: Elongation complex protein 6 [PF09807.11, score=20.9]} {RNA1509_17561} {RNA1310_2795.1} {RNA815_13493}
4.	MligTC455_41333	33	0.68	Mlig455_009688	Neo: - Age: -		0.97	-	-	0.970	-	-	-	Mlig455_009688 {REF} {Length: 1021} {NoTransDecoderORF} {RNA1310_61949}
5.	MligTC455_13077	69	1.44	Mlig455_008899	Neo: - Age: -		0.964	-	-	0.964	-	-	-	Mlig455_008899 {REF} {Length: 1453} {RNA1509_51032} {RNA1310_26040.1} {RNA815_18520.1}