M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_20432

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_20432 136 2.83 Mlig455_002300

Neo: -

Age: -

 TP53BP1 Mlig455_002300 {REF} {Length: 5080} {Human: ENSG00000067369, TP53BP1, tumor protein p53 binding protein 1, [RH, Score=86.3, Expect=2e-16]} {Mouse: ENSMUSG00000043909, Trp53bp1, transformation related protein 53 binding protein 1, [RH, Score=86.3, Expect=2e-16]} {RNA1509_51455} {RNA1310_14436} {RNA815_16236}

Cumulative graph for MligTC455_20432

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.905 2.235 0.99953 1.00000
RegionR2 1.671 2.235 0.15305 0.48912
RegionR3 0.959 2.235 0.34092 0.87773
RegionR4 1.651 2.235 0.10934 0.32654
RegionR5 1.683 2.235 0.06329 0.22146
RegionR6 2.353 2.235 0.01167 0.18483
RegionR7 -4.849 2.235 0.99955 1.00000
RegionR8 2.437 2.235 0.03960 0.39087

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.921 2.235 0.99995 1.00000
RegenerationR2 -0.597 2.235 0.45182 0.84826
RegenerationR3 1.481 2.235 0.05663 0.40839
RegenerationR4 0.463 2.235 0.52705 0.88295
RegenerationR5 1.18 2.235 0.05239 0.36855
RegenerationR6 0.879 2.235 0.19708 0.53718
RegenerationBL 0.843 2.235 0.50878 0.87246
RegenerationTP 2.209 2.235 0.20955 0.65181


Genes with expression patterns similar to MligTC455_20432

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_20432 136 2.83 Mlig455_002300

Neo: -

Age: -

 TP53BP1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_002300 {REF} {Length: 5080} {Human: ENSG00000067369, TP53BP1, tumor protein p53 binding protein 1, [RH, Score=86.3, Expect=2e-16]} {Mouse: ENSMUSG00000043909, Trp53bp1, transformation related protein 53 binding protein 1, [RH, Score=86.3, Expect=2e-16]} {RNA1509_51455} {RNA1310_14436} {RNA815_16236}
2. MligTC455_40717 240 4.99 Mlig455_028054

Neo: -

Age: -

Region-enriched R5: 1.252/0.02695

 2.575 - - - 0.953 0.865 0.757 Mlig455_028054 {REF} {Length: 201} {NoTransDecoderORF} {RNA1509_45107} {RNA1310_16278.1}
3. MligTC455_46213 262 5.46 Mlig455_028789

Neo: -

Age: -

 1.828 - - 0.851 0.977 - - Mlig455_028789 {REF} {Length: 1745} {TRANSSPLICED} {RNA1509_57405} {RNA1310_35325} {RNA815_25882}
4. MligTC455_25212 251 5.23 Mlig455_049236

Neo: -

Age: logFC(26M/2M)=0.733

 TRIP4 1.748 - - 0.950 - - 0.798 Mlig455_049236 {REF} {Length: 2082} {TRANSSPLICED} {Pfam: ASCH domain [PF04266.16, score=64.7]; Putative zinc finger motif, C2HC5-type [PF06221.15, score=44.1]} {Human: ENSG00000103671, TRIP4, thyroid hormone receptor interactor 4, [RH, Score=382, Expect=1e-126]} {Mouse: ENSMUSG00000032386, Trip4, thyroid hormone receptor interactor 4, [RH, Score=382, Expect=2e-126]} {Dmel: FBgn0031115, CG11710, [RH, Score=350, Expect=5e-115]} {Celegans: WBGene00000208, asc-1, ASC-1; Activating Signal Cointegrator homolog, [RH, Score=142, Expect=3e-37]} {Smed: dd_Smed_v6_9211_0_1, dd_Smed_v6_9211_0_1, [RH, Score=332, Expect=2e-109]} {RNA1509_40837} {RNA1310_3130.1} {RNA815_4330}
5. MligTC455_24322 131 2.73 Mlig455_019412

Neo: -

Age: Down-Down-Up

Region-enriched R5: 2.189/0.04298

 ANKMY2 1.701 - - - 0.732 - 0.969 Mlig455_019412 {REF} {Length: 2261} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=49.6]; Ankyrin repeats (many copies) [PF13637.8, score=37.3]; MYND finger [PF01753.20, score=32.0]; Ankyrin repeat [PF13606.8, score=31.2]; Ankyrin repeat [PF00023.32, score=29.3]; Ankyrin repeats (many copies) [PF13857.8, score=26.8]} {Human: ENSG00000106524, ANKMY2, ankyrin repeat and MYND domain containing 2, [RH, Score=254, Expect=3e-78]} {Mouse: ENSMUSG00000036188, Ankmy2, ankyrin repeat and MYND domain containing 2, [RH, Score=251, Expect=4e-77]} {Dmel: FBgn0036096, CG8003, [RH, Score=192, Expect=2e-55]} {Celegans: WBGene00000917, daf-25, Dauer abnormal formation protein 25, [RH, Score=137, Expect=1e-35]} {Smed: dd_Smed_v6_5921_0_2, dd_Smed_v6_5921_0_2, [RH, Score=231, Expect=2e-70]} {RNA1509_3934} {RNA1310_13185} {RNA815_18603}
6. MligTC455_46364 391 8.14 Mlig455_010769

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.366/0.01601

 RCC1L 1.685 - - - - 0.722 0.963 Mlig455_010769 {REF} {Length: 2719} {TRANSSPLICED} {Pfam: Regulator of chromosome condensation (RCC1) repeat [PF00415.20, score=136.1]; Regulator of chromosome condensation (RCC1) repeat [PF13540.8, score=68.6]} {Human: ENSG00000274523, RCC1L, RCC1 like, [RH, Score=221, Expect=5e-66]} {Mouse: ENSMUSG00000061979, Rcc1l, reculator of chromosome condensation 1 like, [RH, Score=236, Expect=4e-72]} {Dmel: FBgn0031286, CG3862, [RH, Score=247, Expect=2e-76]} {Celegans: WBGene00012370, W09G3.7, [RH, Score=166, Expect=2e-46]} {Smed: dd_Smed_v6_7271_0_3, dd_Smed_v6_7271_0_3, [RH, Score=164, Expect=2e-45]} {RNA1509_25090} {RNA1310_14056} {RNA815_14642.1}
7. MligTC455_32811 764 15.92 Mlig455_026793, Mlig455_051806

Neo: -

Age: -

 RAB43 1.681 - - 0.730 - 0.951 -

Mlig455_026793 {REF} {Length: 2681} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.7]; ADP-ribosylation factor family [PF00025.23, score=49.5]; AAA domain [PF13401.8, score=19.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=18.8]; 50S ribosome-binding GTPase [PF01926.25, score=18.7]} {Human: ENSG00000172780, RAB43, RAB43, member RAS oncogene family, [RH, Score=248, Expect=1e-83]} {Mouse: ENSMUSG00000030055, Rab43, RAB43, member RAS oncogene family, [RH, Score=238, Expect=4e-80]} {Dmel: FBgn0015793, Rab19, [RH, Score=224, Expect=2e-74]} {Celegans: WBGene00004278, rab-19, RAB family, [RH, Score=231, Expect=1e-77]} {Smed: dd_Smed_v6_2494_0_1, dd_Smed_v6_2494_0_1, [RH, Score=276, Expect=2e-95]} {RNA1509_22843} {RNA1310_16768, RNA1509_22843} {RNA1509_22843, RNA815_20284}

Mlig455_051806 {REF} {Length: 2724} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.7]; ADP-ribosylation factor family [PF00025.23, score=49.5]; AAA domain [PF13401.8, score=19.5]; Gtr1/RagA G protein conserved region [PF04670.14, score=18.8]; 50S ribosome-binding GTPase [PF01926.25, score=18.7]} {Human: ENSG00000172780, RAB43, RAB43, member RAS oncogene family, [RH, Score=247, Expect=3e-83]} {Mouse: ENSMUSG00000030055, Rab43, RAB43, member RAS oncogene family, [RH, Score=238, Expect=9e-80]} {Dmel: FBgn0015793, Rab19, [RH, Score=223, Expect=3e-74]} {Celegans: WBGene00004278, rab-19, RAB family, [RH, Score=229, Expect=7e-77]} {Smed: dd_Smed_v6_2494_0_1, dd_Smed_v6_2494_0_1, [RH, Score=275, Expect=7e-95]} {RNA1509_22843, RNA1509_39313} {RNA1310_16768, RNA1509_39313} {RNA1509_39313, RNA815_20284}
8. MligTC455_18252 40 0.83 Mlig455_019905

Neo: Irradiation

Age: -

Regeneration-upregulated R3: 6.503

Regeneration-enriched R3: 6.503

 GLMN 0.985 - - - - 0.985 - Mlig455_019905 {REF} {Length: 2792} {TRANSSPLICED} {Pfam: Uncharacterised protein family, YAP/Alf4/glomulin [PF08568.12, score=65.4]} {Human: ENSG00000174842, GLMN, glomulin, FKBP associated protein, [RH, Score=98.6, Expect=6e-21]} {Mouse: ENSMUSG00000029276, Glmn, glomulin, FKBP associated protein, [RH, Score=108, Expect=2e-24]} {Dmel: FBgn0050496, CG30496, [RH, Score=66.6, Expect=3e-11]} {Smed: dd_Smed_v6_9392_0_1, dd_Smed_v6_9392_0_1, [Score=70.1, Expect=1e-12]} {RNA1509_27340} {RNA1310_12822.1} {RNA815_2989.1}
9. MligTC455_00880 281 5.85 Mlig455_053748

Neo: -

Age: -

 0.956 - - - - - 0.956 Mlig455_053748 {REF} {Length: 2977} {RNA1509_44311, RNA1509_44706} {RNA1310_11174, RNA1509_44706} {RNA1509_44706, RNA815_18954}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA