M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_20524

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_20524 924 19.24 Mlig455_023321

Neo: -

Age: -

 Mlig455_023321 {REF} {Length: 359} {NoTransDecoderORF} {RNA1509_13138} {RNA1310_56798} {RNA815_8584.1}

Cumulative graph for MligTC455_20524

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.073 4.559 0.94866 1.00000
RegionR2 -0.517 4.559 0.39381 0.78833
RegionR3 0.388 4.559 0.40317 0.93125
RegionR4 0.019 4.559 0.96706 1.00000
RegionR5 1.033 4.559 0.01127 0.06286
RegionR6 0.329 4.559 0.48281 1.00000
RegionR7 -1.193 4.559 0.07714 0.53581
RegionR8 0.013 4.559 0.98436 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.027 4.559 0.98719 1.00000
RegenerationR2 1.901 4.559 0.00033 0.02426
RegenerationR3 0.271 4.559 0.63373 0.92199
RegenerationR4 0.131 4.559 0.81410 0.99111
RegenerationR5 -0.162 4.559 0.76847 0.97855
RegenerationR6 0.538 4.559 0.34048 0.68629
RegenerationBL 1.623 4.559 0.00418 0.05839
RegenerationTP 1.492 4.559 0.02227 0.25426


Genes with expression patterns similar to MligTC455_20524

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_20524 924 19.24 Mlig455_023321

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_023321 {REF} {Length: 359} {NoTransDecoderORF} {RNA1509_13138} {RNA1310_56798} {RNA815_8584.1}
2. MligTC455_22482 55 1.14 Mlig455_019819

Neo: -

Age: -

 1.714 - - - 0.755 0.959 - Mlig455_019819 {REF} {Length: 701} {NoTransDecoderORF} {RNA1310_85829.1} {RNA815_39613}
3. MligTC455_10155 25 0.53 Mlig455_036600

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_036600 {REF} {Length: 1976} {NoTransDecoderORF} {RNA1509_13138} {RNA1310_14959.1} {RNA815_9852.1}
4. MligTC455_47483 756 15.74 Mlig455_031911, Mlig455_032009

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.342

 0.967 - - - - 0.967 -

Mlig455_031911 {REF} {Length: 2878} {Celegans: WBGene00015662, C10A4.1, [Score=63.2, Expect=3e-10]} {RNA1509_51858} {RNA1310_11552} {RNA815_20200}

Mlig455_032009 {REF} {Length: 1372} {TRANSSPLICED} {RNA1509_45592, RNA1509_59005} {RNA1310_33129.1, RNA1509_45592, RNA1509_59005} {RNA1509_45592, RNA1509_59005, RNA815_20200}
5. MligTC455_44594 694 14.45 Mlig455_002373

Neo: -

Age: Down-Up-Down

 SOX21 0.963 - - - - 0.963 - Mlig455_002373 {REF} {Length: 2315} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=89.4]; HMG-box domain [PF09011.12, score=40.9]} {Human: ENSG00000125285, SOX21, SRY-box 21, [Score=108, Expect=4e-27]; ENSG00000181449, SOX2, SRY-box 2, [Score=108, Expect=5e-27]; ENSG00000168875, SOX14, SRY-box 14, [Score=108, Expect=2e-27]; ENSG00000182968, SOX1, SRY-box 1, [Score=107, Expect=6e-26]; ENSG00000134595, SOX3, SRY-box 3, [Score=106, Expect=2e-25]; ENSG00000005513, SOX8, SRY-box 8, [Score=106, Expect=2e-25]} {Mouse: ENSMUSG00000053747, Sox14, SRY (sex determining region Y)-box 14, [Score=108, Expect=1e-27]; ENSMUSG00000074637, Sox2, SRY (sex determining region Y)-box 2, [Score=108, Expect=3e-27]; ENSMUSG00000061517, Sox21, SRY (sex determining region Y)-box 21, [Score=108, Expect=3e-27]; ENSMUSG00000024176, Sox8, SRY (sex determining region Y)-box 8, [Score=107, Expect=6e-26]; ENSMUSG00000096014, Sox1, SRY (sex determining region Y)-box 1, [Score=107, Expect=5e-26]; ENSMUSG00000045179, Sox3, SRY (sex determining region Y)-box 3, [Score=106, Expect=1e-25]; ENSMUSG00000041287, Sox15, SRY (sex determining region Y)-box 15, [Score=104, Expect=2e-26]} {Dmel: FBgn0000411, D, dachs, [Score=115, Expect=3e-29]} {Celegans: WBGene00015716, sox-4, SOX (Mammalian SRY box) family, [RH, Score=106, Expect=2e-27]} {Smed: dd_Smed_v6_8104_0_1, dd_Smed_v6_8104_0_1, [Score=111, Expect=2e-27]} {RNA1509_37296} {RNA1310_8726.1} {RNA815_5231}
6. MligTC455_27067 130 2.7 Mlig455_009534

Neo: -

Age: -

Regeneration-upregulated BL: 5.799

Regeneration-enriched BL: 5.799

 0.962 - - - - 0.962 - Mlig455_009534 {REF} {Length: 1118} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_54802} {RNA815_64986}
7. MligTC455_09740 512 10.66 Mlig455_065095

Neo: -

Age: logFC(26M/2M)=-0.740

 0.96 - - - - 0.960 - Mlig455_065095 {REF} {Length: 1570} {Pfam: Domain of unknown function (DUF1330) [PF07045.13, score=24.7]} {Smed: dd_Smed_v6_8243_0_1, dd_Smed_v6_8243_0_1, [RH, Score=125, Expect=1e-35]} {RNA1509_27582} {RNA1310_31675, RNA1509_27582} {RNA1509_27582, RNA815_18214}
8. MligTC455_27843 317 6.6 Mlig455_054197

Neo: -

Age: -

Regeneration-enriched R6: 4.237
Regeneration-enriched BL: 4.138

 0.957 - - - - 0.957 - Mlig455_054197 {REF} {Length: 1106} {Pfam: Zinc knuckle [PF00098.25, score=22.3]} {RNA1509_40897} {RNA1310_131.1} {RNA815_52.1}
9. MligTC455_14461 137 2.85 Mlig455_029930

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.409

 TRPM7 0.955 - - - - 0.955 - Mlig455_029930 {REF} {Length: 2514} {Pfam: Alpha-kinase family [PF02816.20, score=137.6]; von Willebrand factor type A domain [PF13519.8, score=32.4]} {Human: ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=70.5, Expect=5e-12]; ENSG00000119121, TRPM6, transient receptor potential cation channel subfamily M member 6, [Score=70.5, Expect=5e-12]} {Mouse: ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=73.2, Expect=6e-13]} {Celegans: WBGene00001160, efk-1, Eukaryotic elongation factor 2 kinase, [Score=50.4, Expect=3e-06]} {Smed: dd_Smed_v6_2226_1_1, dd_Smed_v6_2226_1_1, [Score=56.2, Expect=2e-08]} {RNA1509_4148} {RNA1310_6638.1, RNA1509_4148} {RNA1509_4148, RNA815_3624}
10. MligTC455_36363 599 12.48 Mlig455_017154, Mlig455_019693

Neo: -

Age: logFC(26M/2M)=-0.335

 INPP5E 0.954 - - - - 0.954 -

Mlig455_017154 {REF} {Length: 3576} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=21.0]} {Human: ENSG00000148384, INPP5E, inositol polyphosphate-5-phosphatase E, [Score=238, Expect=2e-70]} {Mouse: ENSMUSG00000026925, Inpp5e, inositol polyphosphate-5-phosphatase E, [Score=241, Expect=2e-72]} {Dmel: FBgn0036273, INPP5E, Inositol polyphosphate 5-phosphatase E, [Score=237, Expect=6e-70]} {Celegans: WBGene00012016, inpp-1, INositol Polyphosphate-5-Phosphatase, [Score=118, Expect=8e-29]} {Smed: dd_Smed_v6_18478_0_1, dd_Smed_v6_18478_0_1, [Score=176, Expect=2e-48]} {RNA1509_25624} {RNA1310_8053} {RNA815_23490}

Mlig455_019693 {REF} {Length: 3770} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=20.9]} {Human: ENSG00000148384, INPP5E, inositol polyphosphate-5-phosphatase E, [RH, Score=288, Expect=9e-90]} {Mouse: ENSMUSG00000026925, Inpp5e, inositol polyphosphate-5-phosphatase E, [RH, Score=291, Expect=4e-91]} {Dmel: FBgn0036273, INPP5E, Inositol polyphosphate 5-phosphatase E, [Score=278, Expect=3e-85]} {Celegans: WBGene00012016, inpp-1, INositol Polyphosphate-5-Phosphatase, [RH, Score=136, Expect=3e-35]} {Smed: dd_Smed_v6_18478_0_1, dd_Smed_v6_18478_0_1, [RH, Score=202, Expect=4e-58]} {RNA1509_25624, RNA1509_35190} {RNA1310_8053, RNA1509_25624, RNA1509_35190} {RNA1509_25624, RNA1509_35190, RNA815_12548.1}
11. MligTC455_38855 46 0.96 Mlig455_027537

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_027537 {REF} {Length: 1970} {RNA1509_39463} {RNA1310_38908} {RNA815_20678}
12. MligTC455_40897 1645 34.27 Mlig455_063519

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_063519 {REF} {Length: 1370} {Pfam: Cysteine and tyrosine-rich protein 1 [PF10873.10, score=21.4]} {RNA1509_18073, RNA1509_25726, RNA1509_52666} {RNA1310_31503.1, RNA1509_18073, RNA1509_25726, RNA1509_52666} {RNA1509_18073, RNA1509_25726, RNA1509_52666, RNA815_16246.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA