M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_21081

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21081 1697 35.36 Mlig455_020037

Neo: -

Age: logFC(26M/2M)=0.250

Region-enriched R5: 1.309/0.00000

 ELOVL1 Mlig455_020037 {REF} {Length: 2302} {Pfam: GNS1/SUR4 family [PF01151.20, score=209.7]} {Human: ENSG00000066322, ELOVL1, ELOVL fatty acid elongase 1, [RH, Score=274, Expect=3e-91]; ENSG00000164181, ELOVL7, ELOVL fatty acid elongase 7, [RH, Score=263, Expect=9e-87]} {Mouse: ENSMUSG00000021696, Elovl7, ELOVL family member 7, elongation of long chain fatty acids (yeast), [RH, Score=276, Expect=2e-92]; ENSMUSG00000006390, Elovl1, elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1, [RH, Score=270, Expect=6e-90]} {Dmel: FBgn0037534, CG2781, [RH, Score=286, Expect=2e-95]} {Celegans: WBGene00001245, elo-7, Elongation of very long chain fatty acids protein, [Score=83.2, Expect=5e-18]} {Smed: dd_Smed_v6_10529_0_1, dd_Smed_v6_10529_0_1, [RH, Score=240, Expect=1e-78]} {RNA1509_22155, RNA1509_34387, RNA1509_3866, RNA1509_47946, RNA1509_58944, RNA1509_59822} {RNA1310_10582, RNA1509_22155, RNA1509_34387, RNA1509_3866, RNA1509_47946, RNA1509_58944, RNA1509_59822} {RNA1509_22155, RNA1509_34387, RNA1509_3866, RNA1509_47946, RNA1509_58944, RNA1509_59822, RNA815_12464}

Cumulative graph for MligTC455_21081

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.29 5.298 0.03023 0.44598
RegionR2 -0.814 5.298 0.01508 0.12984
RegionR3 -0.333 5.298 0.20701 0.74739
RegionR4 -0.781 5.298 0.01524 0.08350
RegionR5 1.309 5.298 0.00000 0.00000
RegionR6 0.505 5.298 0.04124 0.38155
RegionR7 -0.352 5.298 0.30389 0.93906
RegionR8 -0.825 5.298 0.06256 0.48671

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.028 5.298 0.01215 0.47194
RegenerationR2 -0.286 5.298 0.37330 0.79749
RegenerationR3 0.049 5.298 0.88246 1.00000
RegenerationR4 0.714 5.298 0.03019 0.28061
RegenerationR5 -0.743 5.298 0.00873 0.16902
RegenerationR6 0.129 5.298 0.66816 0.90793
RegenerationBL 1.126 5.298 0.00076 0.01904
RegenerationTP 0.476 5.298 0.24651 0.69374


Genes with expression patterns similar to MligTC455_21081

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21081 1697 35.36 Mlig455_020037

Neo: -

Age: logFC(26M/2M)=0.250

Region-enriched R5: 1.309/0.00000

 ELOVL1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_020037 {REF} {Length: 2302} {Pfam: GNS1/SUR4 family [PF01151.20, score=209.7]} {Human: ENSG00000066322, ELOVL1, ELOVL fatty acid elongase 1, [RH, Score=274, Expect=3e-91]; ENSG00000164181, ELOVL7, ELOVL fatty acid elongase 7, [RH, Score=263, Expect=9e-87]} {Mouse: ENSMUSG00000021696, Elovl7, ELOVL family member 7, elongation of long chain fatty acids (yeast), [RH, Score=276, Expect=2e-92]; ENSMUSG00000006390, Elovl1, elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1, [RH, Score=270, Expect=6e-90]} {Dmel: FBgn0037534, CG2781, [RH, Score=286, Expect=2e-95]} {Celegans: WBGene00001245, elo-7, Elongation of very long chain fatty acids protein, [Score=83.2, Expect=5e-18]} {Smed: dd_Smed_v6_10529_0_1, dd_Smed_v6_10529_0_1, [RH, Score=240, Expect=1e-78]} {RNA1509_22155, RNA1509_34387, RNA1509_3866, RNA1509_47946, RNA1509_58944, RNA1509_59822} {RNA1310_10582, RNA1509_22155, RNA1509_34387, RNA1509_3866, RNA1509_47946, RNA1509_58944, RNA1509_59822} {RNA1509_22155, RNA1509_34387, RNA1509_3866, RNA1509_47946, RNA1509_58944, RNA1509_59822, RNA815_12464}
2. MligTC455_16890 536 11.16 Mlig455_048125

Neo: Int S/G2/M

Age: Down-Up-Up

Region-enriched R5: 1.048/0.00247

Regeneration-enriched BL: 1.970
Regeneration-enriched R6: 1.647

 GSTCD 1.753 - - - 0.801 0.952 - Mlig455_048125 {REF} {Length: 3240} {TRANSSPLICED} {Pfam: Methyltransferase domain [PF13679.8, score=31.9]; Transmembrane protein 126 [PF07114.13, score=29.5]; Methyltransferase domain [PF13847.8, score=27.6]; Methyltransferase small domain [PF05175.16, score=25.4]; rRNA small subunit methyltransferase G [PF02527.17, score=20.6]} {Human: ENSG00000138780, GSTCD, glutathione S-transferase C-terminal domain containing, [RH, Score=191, Expect=1e-51]} {Mouse: ENSMUSG00000028018, Gstcd, glutathione S-transferase, C-terminal domain containing, [RH, Score=191, Expect=3e-51]} {Dmel: FBgn0032724, CG10428, [RH, Score=179, Expect=1e-47]} {Smed: dd_Smed_v6_16407_0_1, dd_Smed_v6_16407_0_1, [RH, Score=222, Expect=1e-63]} {RNA1509_34179, RNA1509_50307} {RNA1310_13802, RNA1509_50307} {RNA1509_50307, RNA815_15748}
3. MligTC455_29047 4133 86.1 Mlig455_068907

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.690

Region-enriched R5: 1.010/0.00015

 SSR1 0.984 - - - - 0.984 - Mlig455_068907 {REF} {Length: 2177} {Pfam: Translocon-associated protein (TRAP), alpha subunit [PF03896.18, score=187.5]} {Human: ENSG00000124783, SSR1, signal sequence receptor subunit 1, [RH, Score=113, Expect=9e-29]} {Mouse: ENSMUSG00000021427, Ssr1, signal sequence receptor, alpha, [RH, Score=105, Expect=6e-26]} {Dmel: FBgn0028327, l(1)G0320, lethal (1) G0320, [RH, Score=145, Expect=4e-41]} {Celegans: WBGene00022122, trap-1, TRanslocon-Associated Protein, [RH, Score=122, Expect=1e-32]} {Smed: dd_Smed_v6_1657_0_1, dd_Smed_v6_1657_0_1, [RH, Score=126, Expect=9e-34]} {RNA1509_11028, RNA1509_1376} {RNA1310_2397.1, RNA1509_11028} {RNA1509_11028, RNA815_1244.1}
4. MligTC455_29006 7971 166.06 Mlig455_062319, Mlig455_062326

Neo: -

Age: logFC(26M/2M)=0.258

Region-enriched R5: 1.004/0.00025

 SSR1 0.982 - - - - 0.982 -

Mlig455_062319 {REF} {Length: 2605} {Pfam: Translocon-associated protein (TRAP), alpha subunit [PF03896.18, score=181.4]} {Human: ENSG00000124783, SSR1, signal sequence receptor subunit 1, [RH, Score=114, Expect=1e-28]} {Mouse: ENSMUSG00000021427, Ssr1, signal sequence receptor, alpha, [RH, Score=105, Expect=8e-26]} {Dmel: FBgn0028327, l(1)G0320, lethal (1) G0320, [RH, Score=144, Expect=5e-40]} {Celegans: WBGene00022122, trap-1, TRanslocon-Associated Protein, [Score=115, Expect=4e-30]} {Smed: dd_Smed_v6_1657_0_1, dd_Smed_v6_1657_0_1, [RH, Score=124, Expect=2e-32]} {RNA1509_6343} {RNA1310_2397.1} {RNA815_1244.1}

Mlig455_062326 {REF} {Length: 2319} {Pfam: Translocon-associated protein (TRAP), alpha subunit [PF03896.18, score=181.4]} {Human: ENSG00000124783, SSR1, signal sequence receptor subunit 1, [RH, Score=114, Expect=1e-28]} {Mouse: ENSMUSG00000021427, Ssr1, signal sequence receptor, alpha, [RH, Score=105, Expect=8e-26]} {Dmel: FBgn0028327, l(1)G0320, lethal (1) G0320, [RH, Score=144, Expect=5e-40]} {Celegans: WBGene00022122, trap-1, TRanslocon-Associated Protein, [Score=115, Expect=4e-30]} {Smed: dd_Smed_v6_1657_0_1, dd_Smed_v6_1657_0_1, [RH, Score=124, Expect=2e-32]} {RNA1509_6343} {RNA1310_2397.1} {RNA815_1244.1}
5. MligTC455_26871 145 3.02 Mlig455_040659

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=2.378

Region-enriched R5: 1.928/0.02588

 RPL31 0.954 - - - - 0.954 - Mlig455_040659 {REF} {Length: 1865} {TRANSSPLICED} {Pfam: Ribosomal protein L31e [PF01198.21, score=148.9]; SpoU rRNA Methylase family [PF00588.21, score=72.0]; RNA 2'-O ribose methyltransferase substrate binding [PF08032.14, score=29.9]} {Human: ENSG00000071082, RPL31, ribosomal protein L31, [RH, Score=185, Expect=4e-57]} {Mouse: ENSMUSG00000073702, Rpl31, ribosomal protein L31, [RH, Score=185, Expect=3e-57]} {Dmel: FBgn0285949, RpL31, Ribosomal protein L31, [RH, Score=146, Expect=2e-42]} {Celegans: WBGene00004445, rpl-31, 60S ribosomal protein L31, [RH, Score=151, Expect=1e-44]} {Smed: dd_Smed_v6_113_0_1, dd_Smed_v6_113_0_1, [RH, Score=181, Expect=4e-56]} {RNA1509_1013} {RNA1310_35179} {RNA815_35805.2}
6. MligTC455_21305 502 10.45 Mlig455_000205

Neo: -

Age: -

Region-enriched R4: 2.066/0.03569
Region-enriched R5: 1.708/0.04585

Regeneration-upregulated R6: 1.910

Regeneration-enriched R6: 1.910

 EZH1 0.952 - - - 0.952 - - Mlig455_000205 {REF} {Length: 3757} {Pfam: SET domain [PF00856.30, score=71.7]; CXC domain [PF18264.3, score=34.8]} {Human: ENSG00000108799, EZH1, enhancer of zeste 1 polycomb repressive complex 2 subunit, [RH, Score=402, Expect=6e-129]; ENSG00000106462, EZH2, enhancer of zeste 2 polycomb repressive complex 2 subunit, [RH, Score=398, Expect=4e-127]} {Mouse: ENSMUSG00000006920, Ezh1, enhancer of zeste 1 polycomb repressive complex 2 subunit, [RH, Score=402, Expect=7e-129]; ENSMUSG00000029687, Ezh2, enhancer of zeste 2 polycomb repressive complex 2 subunit, [RH, Score=400, Expect=4e-128]} {Dmel: FBgn0000629, E(z), Enhancer of zeste, [Score=498, Expect=7e-166]} {Celegans: WBGene00003220, mes-2, Histone-lysine N-methyltransferase mes-2, [RH, Score=178, Expect=1e-46]} {Smed: dd_Smed_v6_7754_0_1, dd_Smed_v6_7754_0_1, [RH, Score=330, Expect=3e-101]} {RNA1509_24843, RNA1509_55871} {RNA1310_7365, RNA1509_55871} {RNA1509_55871, RNA815_13114}
7. MligTC455_26870 125 2.61 Mlig455_008291

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_008291 {REF} {Length: 1051} {RNA1509_48803} {RNA1310_35179} {RNA815_59234}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA