M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_21266

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21266 892 18.58 Mlig455_034630

Neo: Irradiation

Age: Down-Up-Up

 HMGB1 Mlig455_034630 {REF} {Length: 2619} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=123.2]; HMG-box domain [PF09011.12, score=117.8]} {Human: ENSG00000189403, HMGB1, high mobility group box 1, [RH, Score=177, Expect=4e-56]} {Mouse: ENSMUSG00000066551, Hmgb1, high mobility group box 1, [RH, Score=178, Expect=1e-56]} {Dmel: FBgn0278608, Dsp1, Dorsal switch protein 1, [Score=209, Expect=2e-66]} {Celegans: WBGene00001972, hmg-1.2, High mobility group protein 1.2, [RH, Score=155, Expect=1e-47]} {Smed: dd_Smed_v6_1331_0_1, dd_Smed_v6_1331_0_1, [Score=219, Expect=7e-72]} {RNA1509_15927, RNA1509_4386} {RNA1310_23719, RNA1509_15927} {RNA1509_15927, RNA815_12466.2}

Cumulative graph for MligTC455_21266

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -8.093 4.461 0.00634 0.24740
RegionR2 1.278 4.461 0.15724 0.49582
RegionR3 1.02 4.461 0.22676 0.76858
RegionR4 0.961 4.461 0.30162 0.61478
RegionR5 1.204 4.461 0.12471 0.35551
RegionR6 1.445 4.461 0.06163 0.46538
RegionR7 1.47 4.461 0.07500 0.52846
RegionR8 0.715 4.461 0.49605 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.114 4.461 0.33899 1.00000
RegenerationR2 -0.258 4.461 0.65200 0.93716
RegenerationR3 0.845 4.461 0.17799 0.61322
RegenerationR4 0.634 4.461 0.33629 0.76986
RegenerationR5 0.377 4.461 0.52273 0.87079
RegenerationR6 0.917 4.461 0.13111 0.44456
RegenerationBL 0.683 4.461 0.22676 0.57656
RegenerationTP 1.438 4.461 0.01660 0.22155


Genes with expression patterns similar to MligTC455_21266

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21266 892 18.58 Mlig455_034630

Neo: Irradiation

Age: Down-Up-Up

 HMGB1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_034630 {REF} {Length: 2619} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=123.2]; HMG-box domain [PF09011.12, score=117.8]} {Human: ENSG00000189403, HMGB1, high mobility group box 1, [RH, Score=177, Expect=4e-56]} {Mouse: ENSMUSG00000066551, Hmgb1, high mobility group box 1, [RH, Score=178, Expect=1e-56]} {Dmel: FBgn0278608, Dsp1, Dorsal switch protein 1, [Score=209, Expect=2e-66]} {Celegans: WBGene00001972, hmg-1.2, High mobility group protein 1.2, [RH, Score=155, Expect=1e-47]} {Smed: dd_Smed_v6_1331_0_1, dd_Smed_v6_1331_0_1, [Score=219, Expect=7e-72]} {RNA1509_15927, RNA1509_4386} {RNA1310_23719, RNA1509_15927} {RNA1509_15927, RNA815_12466.2}
2. MligTC455_21265 850 17.72 Mlig455_031444

Neo: -

Age: -

 HMGB1 5.917 0.976 0.994 0.965 0.990 1.000 0.992 Mlig455_031444 {REF} {Length: 987} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=20.4]} {Human: ENSG00000189403, HMGB1, high mobility group box 1, [Score=43.5, Expect=9e-06]; ENSG00000164104, HMGB2, high mobility group box 2, [Score=42.0, Expect=1e-05]} {Mouse: ENSMUSG00000066551, Hmgb1, high mobility group box 1, [Score=43.5, Expect=1e-06]; ENSMUSG00000054717, Hmgb2, high mobility group box 2, [Score=42.0, Expect=6e-06]} {Dmel: FBgn0278608, Dsp1, Dorsal switch protein 1, [Score=49.7, Expect=4e-08]} {Smed: dd_Smed_v6_4873_0_1, dd_Smed_v6_4873_0_1, [Score=52.0, Expect=2e-09]} {RNA1509_4386} {RNA1310_23719} {RNA815_12466.2}
3. MligTC455_25512 1216 25.33 Mlig455_019548

Neo: -

Age: Down-Down-Up

 1.782 - - - 0.826 0.956 - Mlig455_019548 {REF} {Length: 3620} {Pfam: Ets-domain [PF00178.24, score=24.2]} {RNA1509_11886, RNA1509_36788} {RNA1310_15664, RNA1509_11886, RNA1509_36788} {RNA1509_11886, RNA1509_36788, RNA815_5902.1}
4. MligTC455_25510 1207 25.15 Mlig455_019329

Neo: -

Age: -

 1.78 - - - 0.825 0.955 - Mlig455_019329 {REF} {Length: 3000} {Pfam: Ets-domain [PF00178.24, score=24.1]} {RNA1509_36788, RNA1509_58986} {RNA1310_15664, RNA1509_58986} {RNA1509_58986, RNA815_5902.1}
5. MligTC455_25511 1189 24.78 Mlig455_019444

Neo: -

Age: -

 1.771 - - - 0.816 0.955 - Mlig455_019444 {REF} {Length: 985} {RNA1509_11886} {RNA1310_15664} {RNA815_5902.1}
6. MligTC455_41736 711 14.82 Mlig455_018162, Mlig455_049666

Neo: -

Age: Down-Up-Down

 PCIF1 1.762 - - - 0.810 0.952 -

Mlig455_018162 {REF} {Length: 1744} {Pfam: Phosphorylated CTD interacting factor 1 WW domain [PF12237.10, score=38.5]} {Smed: dd_Smed_v6_4647_0_1, dd_Smed_v6_4647_0_1, [Score=96.7, Expect=3e-22]} {RNA1310_17554.2} {RNA815_8653}

Mlig455_049666 {REF} {Length: 1530} {Pfam: Phosphorylated CTD interacting factor 1 WW domain [PF12237.10, score=98.3]} {Human: ENSG00000100982, PCIF1, PDX1 C-terminal inhibiting factor 1, [Score=57.8, Expect=6e-09]} {Mouse: ENSMUSG00000039849, Pcif1, PDX1 C-terminal inhibiting factor 1, [Score=57.0, Expect=7e-09]} {Dmel: FBgn0037021, CG11399, [Score=47.4, Expect=7e-06]} {Smed: dd_Smed_v6_4647_0_1, dd_Smed_v6_4647_0_1, [Score=132, Expect=8e-36]} {RNA1310_17554.1} {RNA815_8653}
7. MligTC455_13686 81 1.69 Mlig455_025201

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_025201 {REF} {Length: 513} {NoTransDecoderORF} {RNA1509_57863} {RNA1310_12861} {RNA815_64064}
8. MligTC455_35728 25 0.52 Mlig455_010053, Mlig455_041042

Neo: -

Age: -

 0.97 - - - - 0.970 -

Mlig455_010053 {REF} {Length: 1749} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=40.6]; GLTT repeat (6 copies) [PF01744.22, score=33.6]} {RNA1509_29268} {RNA1310_67373} {RNA815_38075}

Mlig455_041042 {REF} {Length: 511} {NoTransDecoderORF} {RNA1509_10474} {RNA1310_36684} {RNA815_3255}
9. MligTC455_39622 339 7.06 Mlig455_006332

Neo: -

Age: -

 FAM91A1 0.968 - - - - 0.968 - Mlig455_006332 {REF} {Length: 4161} {TRANSSPLICED} {Pfam: FAM91 C-terminus [PF14648.8, score=404.1]; FAM91 N-terminus [PF14647.8, score=395.5]} {Human: ENSG00000176853, FAM91A1, family with sequence similarity 91 member A1, [RH, Score=667, Expect=0.0]} {Mouse: ENSMUSG00000037119, Fam91a1, family with sequence similarity 91, member A1, [RH, Score=674, Expect=0.0]; ENSMUSG00000116351, Fam91a1, family with sequence similarity 91, member A1, [RH, Score=674, Expect=0.0]} {Dmel: FBgn0064766, CG7600, [RH, Score=432, Expect=7e-138]} {Celegans: WBGene00009366, F33H2.2, [RH, Score=479, Expect=1e-157]} {Smed: dd_Smed_v6_2471_0_1, dd_Smed_v6_2471_0_1, [RH, Score=310, Expect=2e-92]} {RNA1509_26276} {RNA1310_3146} {RNA815_1984}
10. MligTC455_50433 6772 141.08 Mlig455_052577, Mlig455_052592

Neo: -

Age: Down-Up-Up

 TNR 0.966 - - - - 0.966 -

Mlig455_052577 {REF} {Length: 2810} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=125.6]; PAN domain [PF00024.28, score=20.6]} {Human: ENSG00000116147, TNR, tenascin R, [Score=109, Expect=4e-26]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=110, Expect=2e-26]} {Dmel: FBgn0034160, CG5550, [Score=102, Expect=9e-26]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=98.2, Expect=7e-23]} {RNA1509_15461} {RNA1310_26562} {RNA815_14700}

Mlig455_052592 {REF} {Length: 2429} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=125.6]; PAN domain [PF00024.28, score=20.6]} {Human: ENSG00000116147, TNR, tenascin R, [Score=109, Expect=4e-26]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=110, Expect=2e-26]} {Dmel: FBgn0034160, CG5550, [Score=102, Expect=9e-26]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=98.2, Expect=7e-23]} {RNA1509_15461} {RNA1310_26562} {RNA815_14700}
11. MligTC455_30074 224 4.67 Mlig455_010726

Neo: Int S/G2/M

Age: -

 MCM6 0.965 - - - - 0.965 - Mlig455_010726 {REF} {Length: 5430} {Pfam: MCM P-loop domain [PF00493.25, score=325.2]; MCM OB domain [PF17207.5, score=124.3]; MCM6 C-terminal winged-helix domain [PF18263.3, score=96.2]; MCM AAA-lid domain [PF17855.3, score=87.7]; MCM N-terminal domain [PF14551.8, score=60.7]; Magnesium chelatase, subunit ChlI [PF01078.23, score=31.9]; ATPase family associated with various cellular activities (AAA) [PF07726.13, score=25.0]; AAA domain (dynein-related subfamily) [PF07728.16, score=20.5]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=19.4]; Sigma-54 interaction domain [PF00158.28, score=18.9]} {Human: ENSG00000076003, MCM6, minichromosome maintenance complex component 6, [RH, Score=879, Expect=0.0]} {Mouse: ENSMUSG00000026355, Mcm6, minichromosome maintenance complex component 6, [RH, Score=868, Expect=0.0]} {Dmel: FBgn0025815, Mcm6, Minichromosome maintenance 6, [RH, Score=852, Expect=0.0]} {Celegans: WBGene00003158, mcm-6, DNA replication licensing factor mcm-6, [RH, Score=747, Expect=0.0]} {Smed: dd_Smed_v6_2682_0_1, dd_Smed_v6_2682_0_1, [RH, Score=769, Expect=0.0]} {RNA1509_4924} {RNA1310_1781.1} {RNA815_909}
12. MligTC455_36820 1119 23.32 Mlig455_008859

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.295

Region-specific R7: 5.846

Region-enriched R7: 4.984/0.00000
Region-enriched R8: 3.683/0.00000
Region-enriched R6: 2.251/0.00000

 0.965 - - - - 0.965 - Mlig455_008859 {REF} {Length: 1736} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=138.7]} {Dmel: FBgn0034583, CG10527, [Score=102, Expect=2e-26]} {Smed: dd_Smed_v6_1040_0_1, dd_Smed_v6_1040_0_1, [RH, Score=145, Expect=6e-45]} {RNA1509_33238, RNA1509_38235} {RNA1310_26456.1, RNA1509_33238} {RNA1509_33238, RNA815_25480}
13. MligTC455_24487 545 11.36 Mlig455_034600

Neo: -

Age: Down-Up-Up

Region-enriched R6: 4.264/0.00000
Region-enriched R7: 3.895/0.00000

Regeneration-downregulated R6: -3.270

Regeneration-depleted R6: -3.270

 0.964 - - - - 0.964 - Mlig455_034600 {REF} {Length: 1082} {Pfam: Amnionless [PF14828.8, score=19.1]} {RNA1509_46788} {RNA1310_37428.1} {RNA815_17791}
14. MligTC455_30106 2396 49.92 Mlig455_003445, Mlig455_009387, Mlig455_030672

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.781

Region-specific R7: 3.519

Region-enriched R7: 3.049/0.00000

 WSCD1 0.962 - - - - 0.962 -

Mlig455_003445 {REF} {Length: 894} {RNA1509_18995} {RNA1310_43178.2} {RNA815_20605.1}

Mlig455_009387 {REF} {Length: 1135}

Mlig455_030672 {REF} {Length: 1747} {Pfam: WSC domain [PF01822.21, score=128.1]; Protein of unknown function (DUF4038) [PF13204.8, score=20.2]} {Human: ENSG00000179314, WSCD1, WSC domain containing 1, [Score=50.8, Expect=1e-06]} {Mouse: ENSMUSG00000020811, Wscd1, WSC domain containing 1, [Score=54.7, Expect=4e-08]} {RNA1509_18995} {RNA1310_43178.2, RNA1509_18995} {RNA1509_18995, RNA815_20605.1}
15. MligTC455_31448 183 3.82 Mlig455_033834

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_033834 {REF} {Length: 2859} {RNA1509_53217} {RNA1310_59954.1} {RNA815_36681.1}
16. MligTC455_40809 314 6.55 Mlig455_004965

Neo: -

Age: -

Region-enriched R7: 2.949/0.00106

 0.959 - - - - 0.959 - Mlig455_004965 {REF} {Length: 869} {RNA1509_11711} {RNA1310_88162} {RNA815_25852}
17. MligTC455_53509 51 1.05 Mlig455_039905

Neo: -

Age: Up-Down-Up

Region-enriched R7: 5.487/0.00010
Region-enriched R2: 3.991/0.02985

 KREMEN1 0.959 - - - - 0.959 - Mlig455_039905 {REF} {Length: 4459} {Pfam: WSC domain [PF01822.21, score=601.0]} {Human: ENSG00000183762, KREMEN1, kringle containing transmembrane protein 1, [Score=65.1, Expect=6e-10]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=65.1, Expect=4e-10]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=69.3, Expect=2e-11]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=50.4, Expect=1e-05]} {RNA1509_15008} {RNA1310_9885} {RNA815_22574}
18. MligTC455_15577 20 0.42 Mlig455_069588

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_069588 {REF} {Length: 2357} {NoTransDecoderORF} {RNA1310_98152} {RNA815_46661}
19. MligTC455_49947 15947 332.23 Mlig455_032811

Neo: -

Age: Down-Down-Up

Region-enriched R7: 1.955/0.00000

 0.958 - - - - 0.958 - Mlig455_032811 {REF} {Length: 1080} {RNA1509_1805, RNA1509_19404} {RNA1310_46290.1, RNA1509_1805, RNA1509_19404} {RNA1509_1805, RNA1509_19404, RNA815_17046}
20. MligTC455_15114 111 2.32 Mlig455_022690, Mlig455_022704, Mlig455_070618

Neo: -

Age: Up-Down-Up

Region-enriched R3: 3.217/0.00259

 0.957 - - - - 0.957 -

Mlig455_022690 {REF} {Length: 2470} {Dmel: FBgn0053265, Muc68E, Mucin 68E, [Score=49.7, Expect=4e-07]} {RNA1310_82963} {RNA815_53456}

Mlig455_022704 {REF} {Length: 2776} {Pfam: EGF-like domain [PF00008.29, score=28.0]; Human growth factor-like EGF [PF12661.9, score=22.6]; Complement Clr-like EGF-like [PF12662.9, score=21.0]; EGF-like domain [PF07974.15, score=19.1]} {RNA1509_41656} {RNA1310_43177} {RNA815_53456}

Mlig455_070618 {REF} {Length: 5333} {Pfam: EGF-like domain [PF00008.29, score=28.1]; Human growth factor-like EGF [PF12661.9, score=20.7]; Complement Clr-like EGF-like [PF12662.9, score=20.0]} {Mouse: ENSMUSG00000079173, Zan, zonadhesin, [Score=70.5, Expect=1e-11]} {Dmel: FBgn0053265, Muc68E, Mucin 68E, [Score=177, Expect=9e-45]} {Celegans: WBGene00006436, ttn-1, Titin homolog, [Score=53.5, Expect=1e-06]} {RNA1509_41656} {RNA1310_43177} {RNA815_53456}
21. MligTC455_17576 43 0.9 Mlig455_042073, Mlig455_042288, Mlig455_042297

Neo: -

Age: -

 0.957 - - - - 0.957 -

Mlig455_042073 {REF} {Length: 2091} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=40.4]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=27.9]} {Smed: dd_Smed_v6_26560_0_2, dd_Smed_v6_26560_0_2, [Score=109, Expect=1e-26]} {RNA1310_140198}

Mlig455_042288 {REF} {Length: 1211} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=40.4]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=27.9]} {Smed: dd_Smed_v6_26560_0_2, dd_Smed_v6_26560_0_2, [Score=109, Expect=1e-26]} {RNA1310_140198}

Mlig455_042297 {REF} {Length: 2091} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=40.6]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=28.1]} {Smed: dd_Smed_v6_26560_0_2, dd_Smed_v6_26560_0_2, [Score=108, Expect=2e-26]} {RNA1310_140198}
22. MligTC455_40356 51 1.05 Mlig455_016232

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_016232 {REF} {Length: 1479} {Pfam: Destabilase [PF05497.14, score=99.9]} {Dmel: FBgn0025827, CG6421, [Score=55.5, Expect=4e-10]} {Celegans: WBGene00016669, ilys-2, Invertebrate-type lysozyme 2, [RH, Score=88.2, Expect=6e-23]} {RNA1509_50721} {RNA1310_33163} {RNA815_21535}
23. MligTC455_02518 180 3.75 Mlig455_055401

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_055401 {REF} {Length: 2759} {RNA1509_29842} {RNA1310_25832} {RNA815_24592}
24. MligTC455_24631 8516 177.42 Mlig455_021282

Neo: Int S/G2/M

Age: logFC(26M/2M)=8.536

 0.955 - - - - 0.955 - Mlig455_021282 {REF} {Length: 304} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_363} {RNA1310_113178.2} {RNA815_52026}
25. MligTC455_33569 50 1.05 Mlig455_011393

Neo: -

Age: -

Region-enriched R3: 3.123/0.04141

 0.954 - - - - 0.954 - Mlig455_011393 {REF} {Length: 1811} {RNA1509_38108} {RNA1310_23033.1, RNA1509_38108} {RNA1509_38108, RNA815_15683.1}
26. MligTC455_48663 23 0.47 Mlig455_034525

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_034525 {REF} {Length: 1107} {NoTransDecoderORF} {RNA1310_79266}
27. MligTC455_48024 586 12.21 Mlig455_004155

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_004155 {REF} {Length: 1687} {Pfam: C-terminal duplication domain of Friend of PRMT1 [PF13865.8, score=24.6]} {RNA1509_8514} {RNA1310_4141.1} {RNA815_7360}
28. MligTC455_36345 702 14.62 Mlig455_003515, Mlig455_015546

Neo: -

Age: -

 0.951 - - - - 0.951 -

Mlig455_003515 {REF} {Length: 2339} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_30406} {RNA1310_58845} {RNA815_41011}

Mlig455_015546 {REF} {Length: 1519} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_30406} {RNA1310_58845} {RNA815_41011}
29. MligTC455_45689 863 17.97 Mlig455_051128

Neo: -

Age: logFC(26M/2M)=0.541

 0.951 - - - - 0.951 - Mlig455_051128 {REF} {Length: 2347} {RNA1509_31908} {RNA1310_21586} {RNA815_10734.1}
30. MligTC455_51613 49 1.03 Mlig455_036759

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_036759 {REF} {Length: 427} {NoTransDecoderORF} {RNA1509_45539} {RNA1310_120300.2} {RNA815_29511.1}
31. MligTC455_36837 9734 202.79 Mlig455_053790

Neo: -

Age: logFC(26M/2M)=0.399

 RPLP1 0.95 - - - - 0.950 - Mlig455_053790 {REF} {Length: 520} {TRANSSPLICED} {Pfam: 60s Acidic ribosomal protein [PF00428.21, score=89.2]} {Human: ENSG00000137818, RPLP1, ribosomal protein lateral stalk subunit P1, [RH, Score=85.1, Expect=5e-22]} {Mouse: ENSMUSG00000007892, Rplp1, ribosomal protein, large, P1, [RH, Score=84.0, Expect=9e-22]; ENSMUSG00000060019, Gm10073, predicted pseudogene 10073, [RH, Score=80.9, Expect=1e-20]} {Dmel: FBgn0002593, RpLP1, Ribosomal protein LP1, [Score=101, Expect=7e-29]} {Celegans: WBGene00004409, rla-1, 60S acidic ribosomal protein P1, [Score=84.7, Expect=2e-22]} {Smed: dd_Smed_v6_224_0_1, dd_Smed_v6_224_0_1, [Score=67.4, Expect=8e-16]} {RNA1509_7253} {RNA1310_72886} {RNA815_36874.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA