M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_21613

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21613 1580 32.92 Mlig455_024675

Neo: -

Age: -

Region-enriched R4: 1.070/0.00212

 RAB3C Mlig455_024675 {REF} {Length: 1670} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=195.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=108.6]; ADP-ribosylation factor family [PF00025.23, score=56.1]; Signal recognition particle receptor beta subunit [PF09439.12, score=20.3]} {Human: ENSG00000152932, RAB3C, RAB3C, member RAS oncogene family, [Score=318, Expect=7e-111]; ENSG00000169213, RAB3B, RAB3B, member RAS oncogene family, [Score=313, Expect=3e-109]; ENSG00000105514, RAB3D, RAB3D, member RAS oncogene family, [Score=303, Expect=5e-105]; ENSG00000105649, RAB3A, RAB3A, member RAS oncogene family, [Score=303, Expect=3e-105]} {Mouse: ENSMUSG00000021700, Rab3c, RAB3C, member RAS oncogene family, [Score=317, Expect=6e-111]; ENSMUSG00000019066, Rab3d, RAB3D, member RAS oncogene family, [Score=315, Expect=5e-110]; ENSMUSG00000003411, Rab3b, RAB3B, member RAS oncogene family, [Score=311, Expect=2e-108]; ENSMUSG00000031840, Rab3a, RAB3A, member RAS oncogene family, [Score=303, Expect=2e-105]; ENSMUSG00000111277, Rab3a, RAB3A, member RAS onco family, [Score=303, Expect=2e-105]} {Dmel: FBgn0005586, Rab3, [Score=327, Expect=6e-115]} {Celegans: WBGene00004267, rab-3, Ras-related protein Rab-3, [Score=303, Expect=1e-105]} {Smed: dd_Smed_v6_2466_0_1, dd_Smed_v6_2466_0_1, [Score=311, Expect=6e-109]} {RNA1509_6054} {RNA1310_19060} {RNA815_7405.1}

Cumulative graph for MligTC455_21613

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.45 5.261 0.04577 0.51215
RegionR2 0.336 5.261 0.28877 0.67700
RegionR3 0.05 5.261 0.85138 1.00000
RegionR4 1.07 5.261 0.00014 0.00212
RegionR5 -0.438 5.261 0.09317 0.29099
RegionR6 -0.161 5.261 0.57020 1.00000
RegionR7 0.388 5.261 0.22538 0.84647
RegionR8 0.204 5.261 0.60968 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.485 5.261 0.68187 1.00000
RegenerationR2 -0.079 5.261 0.77110 0.98072
RegenerationR3 0.516 5.261 0.07839 0.46247
RegenerationR4 -1.03 5.261 0.00045 0.02021
RegenerationR5 0.317 5.261 0.27106 0.70246
RegenerationR6 0.06 5.261 0.84723 0.99894
RegenerationBL -0.365 5.261 0.29337 0.65563
RegenerationTP 0.02 5.261 0.95402 1.00000


Genes with expression patterns similar to MligTC455_21613

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21613 1580 32.92 Mlig455_024675

Neo: -

Age: -

Region-enriched R4: 1.070/0.00212

 RAB3C 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_024675 {REF} {Length: 1670} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=195.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=108.6]; ADP-ribosylation factor family [PF00025.23, score=56.1]; Signal recognition particle receptor beta subunit [PF09439.12, score=20.3]} {Human: ENSG00000152932, RAB3C, RAB3C, member RAS oncogene family, [Score=318, Expect=7e-111]; ENSG00000169213, RAB3B, RAB3B, member RAS oncogene family, [Score=313, Expect=3e-109]; ENSG00000105514, RAB3D, RAB3D, member RAS oncogene family, [Score=303, Expect=5e-105]; ENSG00000105649, RAB3A, RAB3A, member RAS oncogene family, [Score=303, Expect=3e-105]} {Mouse: ENSMUSG00000021700, Rab3c, RAB3C, member RAS oncogene family, [Score=317, Expect=6e-111]; ENSMUSG00000019066, Rab3d, RAB3D, member RAS oncogene family, [Score=315, Expect=5e-110]; ENSMUSG00000003411, Rab3b, RAB3B, member RAS oncogene family, [Score=311, Expect=2e-108]; ENSMUSG00000031840, Rab3a, RAB3A, member RAS oncogene family, [Score=303, Expect=2e-105]; ENSMUSG00000111277, Rab3a, RAB3A, member RAS onco family, [Score=303, Expect=2e-105]} {Dmel: FBgn0005586, Rab3, [Score=327, Expect=6e-115]} {Celegans: WBGene00004267, rab-3, Ras-related protein Rab-3, [Score=303, Expect=1e-105]} {Smed: dd_Smed_v6_2466_0_1, dd_Smed_v6_2466_0_1, [Score=311, Expect=6e-109]} {RNA1509_6054} {RNA1310_19060} {RNA815_7405.1}
2. MligTC455_21614 1597 33.28 Mlig455_044055

Neo: -

Age: Up-Up-Down

Region-enriched R4: 1.097/0.00163

 RAB3C 5.937 0.998 0.999 0.947 0.997 0.998 0.998 Mlig455_044055 {REF} {Length: 1653} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=197.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=108.0]; ADP-ribosylation factor family [PF00025.23, score=57.1]; Signal recognition particle receptor beta subunit [PF09439.12, score=20.2]; Elongation factor Tu GTP binding domain [PF00009.29, score=18.2]} {Human: ENSG00000152932, RAB3C, RAB3C, member RAS oncogene family, [Score=318, Expect=5e-111]; ENSG00000169213, RAB3B, RAB3B, member RAS oncogene family, [Score=306, Expect=2e-106]} {Mouse: ENSMUSG00000021700, Rab3c, RAB3C, member RAS oncogene family, [Score=320, Expect=7e-112]; ENSMUSG00000019066, Rab3d, RAB3D, member RAS oncogene family, [Score=307, Expect=8e-107]; ENSMUSG00000003411, Rab3b, RAB3B, member RAS oncogene family, [Score=304, Expect=1e-105]} {Dmel: FBgn0005586, Rab3, [Score=332, Expect=7e-117]} {Celegans: WBGene00004267, rab-3, Ras-related protein Rab-3, [Score=308, Expect=2e-107]} {Smed: dd_Smed_v6_7977_0_1, dd_Smed_v6_7977_0_1, [Score=313, Expect=6e-110]} {RNA1509_6054} {RNA1310_19060, RNA1509_6054} {RNA1509_6054, RNA815_7405.1}
3. MligTC455_35881 145 3.02 Mlig455_050799

Neo: -

Age: Down-Up-Up

 0.956 - - - - 0.956 - Mlig455_050799 {REF} {Length: 3820} {RNA1509_29527} {RNA1310_12793} {RNA815_4003}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA