M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_21744

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21744 89 1.86 Mlig455_015371

Neo: -

Age: -

 Mlig455_015371 {REF} {Length: 861} {NoTransDecoderORF} {RNA1509_23928} {RNA1310_133246} {RNA815_1281.1}

Cumulative graph for MligTC455_21744

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.159 0.782 1.00000 1.00000
RegionR2 -0.515 0.782 0.97748 1.00000
RegionR3 -1.566 0.782 0.99992 1.00000
RegionR4 2.837 0.782 1.00000 1.00000
RegionR5 1.859 0.782 0.11371 0.33317
RegionR6 1.124 0.782 0.44349 1.00000
RegionR7 -1.81 0.782 1.00000 1.00000
RegionR8 -1.771 0.782 0.99994 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.176 0.782 1.00000 1.00000
RegenerationR2 -0.282 0.782 0.95946 1.00000
RegenerationR3 2.171 0.782 0.62496 0.91791
RegenerationR4 0.118 0.782 0.81913 0.99354
RegenerationR5 -0.975 0.782 0.32361 0.74631
RegenerationR6 -3.317 0.782 0.07702 0.34693
RegenerationBL -1.126 0.782 1.00000 1.00000
RegenerationTP 1.591 0.782 0.85639 1.00000


Genes with expression patterns similar to MligTC455_21744

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21744 89 1.86 Mlig455_015371

Neo: -

Age: -

 2 - - 1.000 - - 1.000 Mlig455_015371 {REF} {Length: 861} {NoTransDecoderORF} {RNA1509_23928} {RNA1310_133246} {RNA815_1281.1}
2. MligTC455_41289 88 1.84 Mlig455_006035

Neo: -

Age: Up-Down-Down

 1.806 - - 0.963 - - 0.843 Mlig455_006035 {REF} {Length: 1612} {RNA1509_22012} {RNA1310_42259} {RNA815_41617}
3. MligTC455_31931 18 0.38 Mlig455_020066

Neo: -

Age: logFC(26M/2M)=-0.595

 MAP3K4 1.784 - - 0.959 - - 0.825 Mlig455_020066 {REF} {Length: 2970} {Pfam: Protein kinase domain [PF00069.27, score=135.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=94.7]; Ankyrin repeats (3 copies) [PF12796.9, score=74.4]; Ankyrin repeats (many copies) [PF13637.8, score=52.7]; Ankyrin repeat [PF13606.8, score=51.4]; Ankyrin repeats (many copies) [PF13857.8, score=46.3]; Ankyrin repeat [PF00023.32, score=45.2]} {Human: ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=104, Expect=3e-22]; ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=103, Expect=8e-23]; ENSG00000197442, MAP3K5, mitogen-activated protein kinase kinase kinase 5, [Score=100, Expect=4e-21]; ENSG00000126562, WNK4, WNK lysine deficient protein kinase 4, [Score=100, Expect=4e-21]; ENSG00000180815, MAP3K15, mitogen-activated protein kinase kinase kinase 15, [Score=99.8, Expect=6e-21]} {Mouse: ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=102, Expect=7e-22]; ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=102, Expect=2e-22]; ENSMUSG00000035112, Wnk4, WNK lysine deficient protein kinase 4, [Score=101, Expect=1e-21]; ENSMUSG00000071369, Map3k5, mitogen-activated protein kinase kinase kinase 5, [Score=100, Expect=3e-21]; ENSMUSG00000031303, Map3k15, mitogen-activated protein kinase kinase kinase 15, [Score=99.4, Expect=6e-21]; ENSMUSG00000041245, Wnk3, WNK lysine deficient protein kinase 3, [Score=97.1, Expect=1e-20]; ENSMUSG00000045962, Wnk1, WNK lysine deficient protein kinase 1, [Score=97.1, Expect=3e-20]} {Dmel: FBgn0024329, Mekk1, [Score=97.4, Expect=2e-20]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=112, Expect=3e-25]} {Smed: dd_Smed_v6_2030_0_14, dd_Smed_v6_2030_0_14, [Score=104, Expect=1e-23]} {RNA1509_26758} {RNA1310_10050} {RNA815_10088.1}
4. MligTC455_50781 17 0.35 Mlig455_012010

Neo: -

Age: -

 HTR4 0.971 - - 0.971 - - - Mlig455_012010 {REF} {Length: 2944} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=230.6]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=58.2]; 7tm Chemosensory receptor [PF08395.14, score=19.8]} {Human: ENSG00000164270, HTR4, 5-hydroxytryptamine receptor 4, [RH, Score=219, Expect=4e-67]; ENSG00000184845, DRD1, dopamine receptor D1, [RH, Score=214, Expect=3e-64]} {Mouse: ENSMUSG00000026322, Htr4, 5 hydroxytryptamine (serotonin) receptor 4, [RH, Score=226, Expect=9e-70]} {Dmel: FBgn0038063, Octbeta2R, Octopamine beta2 receptor, [RH, Score=331, Expect=1e-107]} {Celegans: WBGene00001052, dop-1, DOPamine receptor, [Score=181, Expect=9e-53]} {Smed: dd_Smed_v6_13756_0_1, dd_Smed_v6_13756_0_1, [RH, Score=353, Expect=2e-119]} {RNA1310_126774}
5. MligTC455_46723 138 2.87 Mlig455_066171

Neo: -

Age: -

 CHRNA6 0.963 - - - - - 0.963 Mlig455_066171 {REF} {Length: 1617} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=107.0]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=48.7]} {Human: ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=127, Expect=8e-32]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=123, Expect=2e-30]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=122, Expect=6e-30]} {Mouse: ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=131, Expect=2e-33]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=130, Expect=2e-33]} {Celegans: WBGene00006765, unc-29, Acetylcholine receptor subunit beta-type unc-29, [Score=92.0, Expect=4e-20]} {Smed: dd_Smed_v6_14630_0_1, dd_Smed_v6_14630_0_1, [Score=142, Expect=2e-37]} {RNA1509_55012} {RNA1310_6313.1} {RNA815_3014.1}
6. MligTC455_50573 41 0.86 Mlig455_063506

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_063506 {REF} {Length: 1172} {NoTransDecoderORF} {RNA1310_62768} {RNA815_43019}
7. MligTC455_12971 15 0.3 Mlig455_023929

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_023929 {REF} {Length: 305} {NoTransDecoderORF}
8. MligTC455_30453 53 1.09 Mlig455_003193, Mlig455_021606

Neo: -

Age: -

 0.954 - - 0.954 - - -

Mlig455_003193 {REF} {Length: 824} {NoTransDecoderORF} {RNA1310_55844}

Mlig455_021606 {REF} {Length: 2417} {Pfam: F5/8 type C domain [PF00754.27, score=30.6]} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [Score=60.8, Expect=6e-12]} {RNA1310_52762} {RNA815_32413}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA