TomoSeq data search

Data search

Results for MligTC455_21950

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_21950

87

1.81

Mlig455_011910

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.661

EEF2K

Mlig455_011910 {REF} {Length: 2861} {Pfam: Alpha-kinase family [PF02816.20, score=112.9]; von Willebrand factor type A domain [PF13519.8, score=25.1]} {Human: ENSG00000284161, EEF2K, eukaryotic elongation factor 2 kinase, [Score=56.6, Expect=1e-07]; ENSG00000103319, EEF2K, eukaryotic elongation factor 2 kinase, [Score=56.6, Expect=8e-08]; ENSG00000073331, ALPK1, alpha kinase 1, [Score=55.1, Expect=4e-07]} {Mouse: ENSMUSG00000035064, Eef2k, eukaryotic elongation factor-2 kinase, [Score=56.6, Expect=6e-08]} {Celegans: WBGene00001160, efk-1, Eukaryotic elongation factor 2 kinase, [Score=62.4, Expect=6e-10]} {Smed: dd_Smed_v6_2651_0_1, dd_Smed_v6_2651_0_1, [Score=62.4, Expect=4e-10]} {RNA1509_53723} {RNA1310_10777, RNA1509_53723} {RNA1509_53723, RNA815_22934}

Cumulative graph for MligTC455_21950

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.503	1.933	0.99972	1.00000
RegionR2	1.811	1.933	0.23569	0.60930
RegionR3	1.521	1.933	0.22283	0.76458
RegionR4	0.923	1.933	0.45868	0.78676
RegionR5	0.542	1.933	0.58401	0.94236
RegionR6	1.362	1.933	0.29031	0.88200
RegionR7	2.604	1.933	0.06327	0.48324
RegionR8	-3.259	1.933	0.99985	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.628	1.933	0.99985	1.00000
RegenerationR2	-0.209	1.933	0.84095	1.00000
RegenerationR3	-1.228	1.933	0.27744	0.71108
RegenerationR4	-0.576	1.933	0.59592	0.91160
RegenerationR5	1.678	1.933	0.09745	0.47753
RegenerationR6	0.242	1.933	0.83633	0.99398
RegenerationBL	0.041	1.933	0.80866	1.00000
RegenerationTP	3.827	1.933	0.03840	0.32667

Genes with expression patterns similar to MligTC455_21950

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_21950	87	1.81	Mlig455_011910	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.661	EEF2K	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_011910 {REF} {Length: 2861} {Pfam: Alpha-kinase family [PF02816.20, score=112.9]; von Willebrand factor type A domain [PF13519.8, score=25.1]} {Human: ENSG00000284161, EEF2K, eukaryotic elongation factor 2 kinase, [Score=56.6, Expect=1e-07]; ENSG00000103319, EEF2K, eukaryotic elongation factor 2 kinase, [Score=56.6, Expect=8e-08]; ENSG00000073331, ALPK1, alpha kinase 1, [Score=55.1, Expect=4e-07]} {Mouse: ENSMUSG00000035064, Eef2k, eukaryotic elongation factor-2 kinase, [Score=56.6, Expect=6e-08]} {Celegans: WBGene00001160, efk-1, Eukaryotic elongation factor 2 kinase, [Score=62.4, Expect=6e-10]} {Smed: dd_Smed_v6_2651_0_1, dd_Smed_v6_2651_0_1, [Score=62.4, Expect=4e-10]} {RNA1509_53723} {RNA1310_10777, RNA1509_53723} {RNA1509_53723, RNA815_22934}
2.	MligTC455_56918	13	0.27	Mlig455_062146	Neo: - Age: -		0.977	-	-	-	-	0.977	-	Mlig455_062146 {REF} {Length: 373} {NoTransDecoderORF} {RNA1509_61} {RNA1310_38817} {RNA815_7257.1}
3.	MligTC455_09484	32	0.67	Mlig455_007982	Neo: - Age: Up-Down-Down		0.957	-	-	0.957	-	-	-	Mlig455_007982 {REF} {Length: 2332} {Pfam: Mab-21 protein [PF03281.16, score=30.7]} {RNA1509_45347} {RNA1310_12573.1} {RNA815_23121}
4.	MligTC455_34111	183	3.81	Mlig455_013788, Mlig455_013920	Neo: Irradiation Age: Up-Up-Down Region-enriched R5: 3.041/0.00076	TRPA1	0.957	-	-	-	-	0.957	-	Mlig455_013788 {REF} {Length: 4648} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=198.0]; Ankyrin repeats (many copies) [PF13637.8, score=149.2]; Ankyrin repeat [PF00023.32, score=144.1]; Ankyrin repeats (many copies) [PF13857.8, score=143.7]; Ankyrin repeat [PF13606.8, score=139.8]; Ion transport protein [PF00520.33, score=19.2]} {Human: ENSG00000104321, TRPA1, transient receptor potential cation channel subfamily A member 1, [Score=157, Expect=2e-38]} {Mouse: ENSMUSG00000032769, Trpa1, transient receptor potential cation channel, subfamily A, member 1, [Score=176, Expect=2e-44]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=124, Expect=3e-28]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=133, Expect=4e-31]} {Smed: dd_Smed_v6_20683_0_1, dd_Smed_v6_20683_0_1, [Score=235, Expect=6e-64]} {RNA1509_8073} {RNA1310_3083.1} {RNA815_994.1} Mlig455_013920 {REF} {Length: 4556} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=199.9]; Ankyrin repeats (many copies) [PF13637.8, score=149.2]; Ankyrin repeats (many copies) [PF13857.8, score=143.3]; Ankyrin repeat [PF00023.32, score=143.2]; Ankyrin repeat [PF13606.8, score=138.4]; Ion transport protein [PF00520.33, score=19.9]} {Human: ENSG00000104321, TRPA1, transient receptor potential cation channel subfamily A member 1, [Score=194, Expect=7e-50]} {Mouse: ENSMUSG00000032769, Trpa1, transient receptor potential cation channel, subfamily A, member 1, [Score=195, Expect=3e-50]} {Dmel: FBgn0035934, TrpA1, Transient receptor potential cation channel A1, [Score=204, Expect=3e-53]} {Celegans: WBGene00007801, trpa-1, Transient receptor potential cation channel subfamily A member 1 homolog, [Score=149, Expect=3e-36]} {Smed: dd_Smed_v6_20683_0_1, dd_Smed_v6_20683_0_1, [Score=288, Expect=3e-81]} {RNA1509_8073} {RNA1310_2090.2, RNA1509_8073} {RNA1509_8073, RNA815_994.1}
5.	MligTC455_18400	27	0.55	Mlig455_003474	Neo: - Age: -		0.956	-	-	-	-	-	0.956	Mlig455_003474 {REF} {Length: 2642} {NoTransDecoderORF} {RNA1509_32550, RNA1509_38113} {RNA1310_35132, RNA1509_32550} {RNA1509_32550, RNA815_14295}
6.	MligTC455_33316	29	0.61	Mlig455_052423	Neo: - Age: -	TM9SF2	0.954	-	-	-	0.954	-	-	Mlig455_052423 {REF} {Length: 2961} {Pfam: Endomembrane protein 70 [PF02990.18, score=636.3]; Citrate transporter [PF03600.18, score=18.8]} {Human: ENSG00000125304, TM9SF2, transmembrane 9 superfamily member 2, [Score=754, Expect=0.0]} {Mouse: ENSMUSG00000025544, Tm9sf2, transmembrane 9 superfamily member 2, [Score=749, Expect=0.0]} {Dmel: FBgn0032880, TM9SF2, Transmembrane 9 superfamily protein member 2, [Score=745, Expect=0.0]} {Celegans: WBGene00006472, tag-123, Transmembrane 9 superfamily member, [Score=691, Expect=0.0]} {Smed: dd_Smed_v6_2806_0_1, dd_Smed_v6_2806_0_1, [Score=424, Expect=1e-139]} {RNA1509_46604} {RNA1310_8008} {RNA815_3036}
7.	MligTC455_40286	317	6.6	Mlig455_025462	Neo: - Age: -	PCK1	0.952	-	-	0.952	-	-	-	Mlig455_025462 {REF} {Length: 5038} {TRANSSPLICED} {Pfam: Phosphoenolpyruvate carboxykinase C-terminal P-loop domain [PF00821.20, score=553.5]; Phosphoenolpyruvate carboxykinase N-terminal domain [PF17297.4, score=304.6]} {Human: ENSG00000124253, PCK1, phosphoenolpyruvate carboxykinase 1, [RH, Score=860, Expect=0.0]; ENSG00000100889, PCK2, phosphoenolpyruvate carboxykinase 2, mitochondrial, [RH, Score=854, Expect=0.0]; ENSG00000285241, PCK2, phosphoenolpyruvate carboxykinase 2, mitochondrial, [RH, Score=854, Expect=0.0]} {Mouse: ENSMUSG00000027513, Pck1, phosphoenolpyruvate carboxykinase 1, cytosolic, [RH, Score=856, Expect=0.0]; ENSMUSG00000040618, Pck2, phosphoenolpyruvate carboxykinase 2 (mitochondrial), [RH, Score=847, Expect=0.0]} {Dmel: FBgn0003067, Pepck, Phosphoenolpyruvate carboxykinase, [RH, Score=832, Expect=0.0]} {Celegans: WBGene00011232, pck-2, Phosphoenolypyruvate CarboxyKinase, [Score=726, Expect=0.0]} {Smed: dd_Smed_v6_6169_0_1, dd_Smed_v6_6169_0_1, [RH, Score=833, Expect=0.0]} {RNA1509_11203, RNA1509_43017} {RNA1310_10480, RNA1509_11203, RNA1509_43017} {RNA1509_11203, RNA1509_43017, RNA815_11465}

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