M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22059

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22059 453 9.44 Mlig455_001627

Neo: Irradiation

Age: -

 ZFHX3 Mlig455_001627 {REF} {Length: 3984} {Pfam: Homeodomain [PF00046.31, score=54.9]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=19.5]; C2H2 type zinc-finger [PF18414.3, score=18.6]} {Human: ENSG00000140836, ZFHX3, zinc finger homeobox 3, [Score=123, Expect=2e-27]} {Mouse: ENSMUSG00000038872, Zfhx3, zinc finger homeobox 3, [Score=123, Expect=9e-28]} {Dmel: FBgn0004607, zfh2, Zn finger homeodomain 2, [Score=149, Expect=9e-36]} {Celegans: WBGene00022518, zfh-2, Zinc Finger and Homeobox, [RH, Score=134, Expect=1e-31]} {Smed: dd_Smed_v6_7033_0_1, dd_Smed_v6_7033_0_1, [RH, Score=146, Expect=2e-35]} {RNA1509_19849, RNA1509_50564} {RNA1310_22416, RNA1509_19849, RNA1509_50564} {RNA1509_19849, RNA1509_50564, RNA815_20239}

Cumulative graph for MligTC455_22059

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.029 3.586 0.37566 1.00000
RegionR2 -0.32 3.586 0.56327 0.92499
RegionR3 0.263 3.586 0.54215 1.00000
RegionR4 0.606 3.586 0.23100 0.52397
RegionR5 0.473 3.586 0.23436 0.54286
RegionR6 0.177 3.586 0.69331 1.00000
RegionR7 -0.669 3.586 0.33462 0.96911
RegionR8 -1.559 3.586 0.12731 0.65599

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.577 3.586 0.68709 1.00000
RegenerationR2 0.501 3.586 0.22969 0.67723
RegenerationR3 0.133 3.586 0.77563 0.97373
RegenerationR4 -0.025 3.586 0.95654 1.00000
RegenerationR5 -0.162 3.586 0.70628 0.95401
RegenerationR6 0.576 3.586 0.21798 0.56227
RegenerationBL 0.9 3.586 0.17372 0.49951
RegenerationTP 0.275 3.586 0.74773 1.00000


Genes with expression patterns similar to MligTC455_22059

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22059 453 9.44 Mlig455_001627

Neo: Irradiation

Age: -

 ZFHX3 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_001627 {REF} {Length: 3984} {Pfam: Homeodomain [PF00046.31, score=54.9]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=19.5]; C2H2 type zinc-finger [PF18414.3, score=18.6]} {Human: ENSG00000140836, ZFHX3, zinc finger homeobox 3, [Score=123, Expect=2e-27]} {Mouse: ENSMUSG00000038872, Zfhx3, zinc finger homeobox 3, [Score=123, Expect=9e-28]} {Dmel: FBgn0004607, zfh2, Zn finger homeodomain 2, [Score=149, Expect=9e-36]} {Celegans: WBGene00022518, zfh-2, Zinc Finger and Homeobox, [RH, Score=134, Expect=1e-31]} {Smed: dd_Smed_v6_7033_0_1, dd_Smed_v6_7033_0_1, [RH, Score=146, Expect=2e-35]} {RNA1509_19849, RNA1509_50564} {RNA1310_22416, RNA1509_19849, RNA1509_50564} {RNA1509_19849, RNA1509_50564, RNA815_20239}
2. MligTC455_22060 414 8.63 Mlig455_070899

Neo: Irradiation

Age: Down-Up-Up

 ZFHX4 5.633 0.887 0.992 0.980 0.908 0.930 0.936 Mlig455_070899 {REF} {Length: 5905} {Pfam: C2H2 type zinc-finger [PF18414.3, score=27.0]; Zinc-finger of C2H2 type [PF12874.9, score=24.8]; Zinc finger, C2H2 type [PF00096.28, score=23.3]; C2H2-type zinc-finger domain [PF13909.8, score=21.7]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=19.4]} {Human: ENSG00000091656, ZFHX4, zinc finger homeobox 4, [RH, Score=202, Expect=2e-51]} {Mouse: ENSMUSG00000025255, Zfhx4, zinc finger homeodomain 4, [RH, Score=201, Expect=2e-51]} {Dmel: FBgn0004607, zfh2, Zn finger homeodomain 2, [RH, Score=164, Expect=2e-40]} {Celegans: WBGene00022518, zfh-2, Zinc Finger and Homeobox, [RH, Score=197, Expect=9e-51]} {Smed: dd_Smed_v6_7033_0_1, dd_Smed_v6_7033_0_1, [Score=139, Expect=4e-33]} {RNA1509_19849} {RNA1310_31042} {RNA815_20239}
3. MligTC455_41893 1552 32.33 Mlig455_038397, Mlig455_038459

Neo: -

Age: -

 NCKAP1 1.713 - - 0.760 0.953 - -

Mlig455_038397 {REF} {Length: 5285} {TRANSSPLICED} {Pfam: Membrane-associated apoptosis protein [PF09735.11, score=1056.8]} {Human: ENSG00000061676, NCKAP1, NCK associated protein 1, [RH, Score=800, Expect=0.0]} {Mouse: ENSMUSG00000027002, Nckap1, NCK-associated protein 1, [RH, Score=799, Expect=0.0]} {Dmel: FBgn0011771, Hem, HEM-protein, [RH, Score=844, Expect=0.0]} {Celegans: WBGene00001580, gex-3, Membrane-associated protein gex-3, [RH, Score=548, Expect=3e-176]} {Smed: dd_Smed_v6_6384_0_1, dd_Smed_v6_6384_0_1, [RH, Score=635, Expect=0.0]} {RNA1509_3242, RNA1509_46490} {RNA1310_6098, RNA1509_46490} {RNA1509_46490, RNA815_962}

Mlig455_038459 {REF} {Length: 5360} {TRANSSPLICED} {Pfam: Membrane-associated apoptosis protein [PF09735.11, score=1058.3]} {Human: ENSG00000061676, NCKAP1, NCK associated protein 1, [RH, Score=800, Expect=0.0]} {Mouse: ENSMUSG00000027002, Nckap1, NCK-associated protein 1, [RH, Score=801, Expect=0.0]} {Dmel: FBgn0011771, Hem, HEM-protein, [RH, Score=846, Expect=0.0]} {Celegans: WBGene00001580, gex-3, Membrane-associated protein gex-3, [RH, Score=548, Expect=5e-176]} {Smed: dd_Smed_v6_6384_0_1, dd_Smed_v6_6384_0_1, [RH, Score=637, Expect=0.0]} {RNA1509_3242} {RNA1310_6098} {RNA815_962}
4. MligTC455_40949 3706 77.2 Mlig455_015679

Neo: -

Age: -

 PSMC2 0.952 - - - 0.952 - - Mlig455_015679 {REF} {Length: 1818} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=139.6]; AAA+ lid domain [PF17862.3, score=37.0]; AAA domain [PF13401.8, score=22.4]; AAA ATPase domain [PF13191.8, score=21.7]; AAA domain (dynein-related subfamily) [PF07728.16, score=21.5]; AAA domain (Cdc48 subfamily) [PF07724.16, score=20.4]; Protein of unknown function (DUF815) [PF05673.15, score=19.4]} {Human: ENSG00000161057, PSMC2, proteasome 26S subunit, ATPase 2, [RH, Score=781, Expect=0.0]} {Mouse: ENSMUSG00000028932, Psmc2, proteasome (prosome, macropain) 26S subunit, ATPase 2, [RH, Score=782, Expect=0.0]} {Dmel: FBgn0028687, Rpt1, Regulatory particle triple-A ATPase 1, [RH, Score=768, Expect=0.0]} {Celegans: WBGene00004501, rpt-1, 26S protease regulatory subunit 7, [RH, Score=736, Expect=0.0]} {Smed: dd_Smed_v6_2686_0_1, dd_Smed_v6_2686_0_1, [RH, Score=776, Expect=0.0]} {RNA1509_10462, RNA1509_1701, RNA1509_17557, RNA1509_23007} {RNA1310_16139, RNA1509_10462, RNA1509_1701, RNA1509_17557, RNA1509_23007} {RNA1509_10462, RNA1509_1701, RNA1509_17557, RNA1509_23007, RNA815_6045}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA