TomoSeq data search

Data search

Results for MligTC455_22109

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_22109	16	0.33	Mlig455_065620, Mlig455_065632	Neo: - Age: Down-Up-Down Region-enriched R2: 4.092/0.03873 Region-enriched R3: 3.492/0.01683 Region-enriched R5: 2.315/0.00950	RTL1	Mlig455_065620 {REF} {Length: 3916} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=65.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=30.4]; Aspartyl protease [PF13650.8, score=25.9]; Retroviral aspartyl protease [PF00077.22, score=19.6]; Zinc knuckle [PF00098.25, score=18.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=71.2, Expect=5e-12]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=167, Expect=2e-44]} {RNA1509_57080} {RNA1310_4777.1} {RNA815_2898} Mlig455_065632 {REF} {Length: 4012} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=65.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=30.4]; Aspartyl protease [PF13650.8, score=25.9]; Retroviral aspartyl protease [PF00077.22, score=19.6]; Zinc knuckle [PF00098.25, score=18.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=71.2, Expect=5e-12]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=167, Expect=2e-44]} {RNA1509_57080} {RNA1310_6076.2} {RNA815_2898}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_22109

0.33

Mlig455_065620, Mlig455_065632

Neo: -

Age: Down-Up-Down

Region-enriched R2: 4.092/0.03873
Region-enriched R3: 3.492/0.01683
Region-enriched R5: 2.315/0.00950

RTL1

Mlig455_065620 {REF} {Length: 3916} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=65.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=30.4]; Aspartyl protease [PF13650.8, score=25.9]; Retroviral aspartyl protease [PF00077.22, score=19.6]; Zinc knuckle [PF00098.25, score=18.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=71.2, Expect=5e-12]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=167, Expect=2e-44]} {RNA1509_57080} {RNA1310_4777.1} {RNA815_2898}

Mlig455_065632 {REF} {Length: 4012} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=65.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=30.4]; Aspartyl protease [PF13650.8, score=25.9]; Retroviral aspartyl protease [PF00077.22, score=19.6]; Zinc knuckle [PF00098.25, score=18.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=71.2, Expect=5e-12]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=167, Expect=2e-44]} {RNA1509_57080} {RNA1310_6076.2} {RNA815_2898}

Cumulative graph for MligTC455_22109

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-6.301	0.605	1.00000	1.00000
RegionR2	4.092	0.605	0.00231	0.03873
RegionR3	3.492	0.605	0.00049	0.01683
RegionR4	-2.506	0.605	0.03957	0.16422
RegionR5	2.315	0.605	0.00092	0.00950
RegionR6	1.745	0.605	0.00171	0.05514
RegionR7	-1.357	0.605	0.99986	1.00000
RegionR8	-1.479	0.605	0.99970	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	3.701	0.605	0.99989	1.00000
RegenerationR2	-1.446	0.605	0.99998	1.00000
RegenerationR3	-1.452	0.605	1.00000	1.00000
RegenerationR4	1.643	0.605	0.99985	1.00000
RegenerationR5	-1.713	0.605	0.00462	0.12319
RegenerationR6	-0.252	0.605	0.00744	0.10576
RegenerationBL	0.927	0.605	1.00000	1.00000
RegenerationTP	2.01	0.605	1.00000	1.00000

Genes with expression patterns similar to MligTC455_22109

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_22109	16	0.33	Mlig455_065620, Mlig455_065632	Neo: - Age: Down-Up-Down Region-enriched R2: 4.092/0.03873 Region-enriched R3: 3.492/0.01683 Region-enriched R5: 2.315/0.00950	RTL1	1	-	1.000	-	-	-	-	Mlig455_065620 {REF} {Length: 3916} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=65.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=30.4]; Aspartyl protease [PF13650.8, score=25.9]; Retroviral aspartyl protease [PF00077.22, score=19.6]; Zinc knuckle [PF00098.25, score=18.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=71.2, Expect=5e-12]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=167, Expect=2e-44]} {RNA1509_57080} {RNA1310_4777.1} {RNA815_2898} Mlig455_065632 {REF} {Length: 4012} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=65.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=30.4]; Aspartyl protease [PF13650.8, score=25.9]; Retroviral aspartyl protease [PF00077.22, score=19.6]; Zinc knuckle [PF00098.25, score=18.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=71.2, Expect=5e-12]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=58.9, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=167, Expect=2e-44]} {RNA1509_57080} {RNA1310_6076.2} {RNA815_2898}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts