M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22138

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22138 3050 63.54 Mlig455_024458

Neo: -

Age: logFC(26M/2M)=-0.514

 Mlig455_024458 {REF} {Length: 2502} {RNA1509_10674, RNA1509_14945, RNA1509_16519, RNA1509_20109, RNA1509_21233, RNA1509_24542, RNA1509_27352, RNA1509_45876, RNA1509_46754, RNA1509_47020, RNA1509_48348, RNA1509_59666} {RNA1310_29555.1, RNA1509_10674, RNA1509_14945, RNA1509_16519, RNA1509_20109, RNA1509_21233, RNA1509_24542, RNA1509_27352, RNA1509_45876, RNA1509_46754, RNA1509_47020, RNA1509_48348, RNA1509_59666} {RNA1509_10674, RNA1509_14945, RNA1509_16519, RNA1509_20109, RNA1509_21233, RNA1509_24542, RNA1509_27352, RNA1509_45876, RNA1509_46754, RNA1509_47020, RNA1509_48348, RNA1509_59666, RNA815_13134}

Cumulative graph for MligTC455_22138

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.82 6.128 0.16210 0.78462
RegionR2 -0.096 6.128 0.77154 1.00000
RegionR3 0.154 6.128 0.58126 1.00000
RegionR4 0.333 6.128 0.31286 0.62812
RegionR5 -0.438 6.128 0.12367 0.35357
RegionR6 0.201 6.128 0.47235 1.00000
RegionR7 0.506 6.128 0.08555 0.56328
RegionR8 0.16 6.128 0.64824 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.06 6.128 0.93743 1.00000
RegenerationR2 -0.177 6.128 0.60031 0.91563
RegenerationR3 -0.565 6.128 0.11317 0.52700
RegenerationR4 -0.674 6.128 0.06720 0.41381
RegenerationR5 -0.154 6.128 0.66198 0.93691
RegenerationR6 -0.616 6.128 0.08608 0.36721
RegenerationBL -1.097 6.128 0.00242 0.04085
RegenerationTP -0.521 6.128 0.15321 0.57903


Genes with expression patterns similar to MligTC455_22138

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22138 3050 63.54 Mlig455_024458

Neo: -

Age: logFC(26M/2M)=-0.514

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_024458 {REF} {Length: 2502} {RNA1509_10674, RNA1509_14945, RNA1509_16519, RNA1509_20109, RNA1509_21233, RNA1509_24542, RNA1509_27352, RNA1509_45876, RNA1509_46754, RNA1509_47020, RNA1509_48348, RNA1509_59666} {RNA1310_29555.1, RNA1509_10674, RNA1509_14945, RNA1509_16519, RNA1509_20109, RNA1509_21233, RNA1509_24542, RNA1509_27352, RNA1509_45876, RNA1509_46754, RNA1509_47020, RNA1509_48348, RNA1509_59666} {RNA1509_10674, RNA1509_14945, RNA1509_16519, RNA1509_20109, RNA1509_21233, RNA1509_24542, RNA1509_27352, RNA1509_45876, RNA1509_46754, RNA1509_47020, RNA1509_48348, RNA1509_59666, RNA815_13134}
2. MligTC455_09428 1119 23.32 Mlig455_024321, Mlig455_024377

Neo: -

Age: -

 1.74 - 0.785 - 0.955 - -

Mlig455_024321 {REF} {Length: 1822} {TRANSSPLICED} {Pfam: Mitotic checkpoint protein [PF05557.15, score=19.0]} {Smed: dd_Smed_v6_11072_0_1, dd_Smed_v6_11072_0_1, [Score=78.2, Expect=2e-15]} {RNA1509_37043} {RNA1310_13592} {RNA815_15407}

Mlig455_024377 {REF} {Length: 3598} {TRANSSPLICED} {Pfam: Mitotic checkpoint protein [PF05557.15, score=18.9]} {Smed: dd_Smed_v6_11072_0_1, dd_Smed_v6_11072_0_1, [Score=78.2, Expect=2e-15]} {RNA1509_37043} {RNA1310_13592, RNA1509_37043} {RNA1509_37043, RNA815_15407}
3. MligTC455_44111 3831 79.82 Mlig455_013954, Mlig455_039337

Neo: -

Age: -

Region-enriched R7: 1.370/0.00005

Regeneration-downregulated BL: -1.383

Regeneration-depleted BL: -1.383

 0.968 - - - 0.968 - -

Mlig455_013954 {REF} {Length: 1658} {Pfam: Spt5 C-terminal nonapeptide repeat binding Spt4 [PF12815.9, score=27.4]} {RNA1509_27811} {RNA1310_38290} {RNA815_35587}

Mlig455_039337 {REF} {Length: 2053} {RNA1509_27811, RNA1509_47914} {RNA1310_38290, RNA1509_47914} {RNA1509_47914, RNA815_35587}
4. MligTC455_33399 674 14.04 Mlig455_052033

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.328

Region-enriched R3: 1.796/0.02239

 TRPM7 0.959 - - - 0.959 - - Mlig455_052033 {REF} {Length: 5199} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=75.9]; Ankyrin repeats (many copies) [PF13637.8, score=67.5]; Ankyrin repeat [PF13606.8, score=43.1]; Ankyrin repeats (many copies) [PF13857.8, score=34.9]; Ankyrin repeat [PF00023.32, score=29.6]} {Human: ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=91.7, Expect=9e-18]} {Mouse: ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=90.5, Expect=1e-17]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=76.6, Expect=1e-13]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=76.6, Expect=1e-13]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=113, Expect=3e-25]} {RNA1509_33117, RNA1509_7385} {RNA1310_1150, RNA1509_33117} {RNA1509_33117, RNA815_344}
5. MligTC455_45208 929 19.35 Mlig455_070298

Neo: -

Age: logFC(26M/2M)=-0.334

 0.957 - - - 0.957 - - Mlig455_070298 {REF} {Length: 1543} {RNA1509_21491, RNA1509_35528} {RNA1310_3497.1, RNA1509_21491, RNA1509_35528} {RNA1509_21491, RNA1509_35528, RNA815_14551}
6. MligTC455_33826 1296 27.01 Mlig455_041826, Mlig455_044130

Neo: -

Age: -

 CACFD1 0.956 - - - - - 0.956

Mlig455_041826 {REF} {Length: 1534} {Pfam: Uncharacterized conserved protein CG6151-P [PF10233.11, score=45.3]} {Human: ENSG00000280479, CACFD1, calcium channel flower domain containing 1, [Score=44.7, Expect=2e-06]; ENSG00000160325, CACFD1, calcium channel flower domain containing 1, [Score=44.7, Expect=2e-06]} {Mouse: ENSMUSG00000015488, Cacfd1, calcium channel flower domain containing 1, [RH, Score=44.7, Expect=9e-07]} {Dmel: FBgn0261722, fwe, flower, [Score=43.5, Expect=4e-06]} {RNA1509_50639} {RNA1310_23100.1} {RNA815_19625.1}

Mlig455_044130 {REF} {Length: 1700} {Pfam: Uncharacterized conserved protein CG6151-P [PF10233.11, score=83.5]} {Human: ENSG00000160325, CACFD1, calcium channel flower domain containing 1, [RH, Score=65.1, Expect=9e-13]; ENSG00000280479, CACFD1, calcium channel flower domain containing 1, [RH, Score=65.1, Expect=9e-13]} {Mouse: ENSMUSG00000015488, Cacfd1, calcium channel flower domain containing 1, [RH, Score=65.5, Expect=1e-13]} {Dmel: FBgn0261722, fwe, flower, [RH, Score=82.4, Expect=6e-20]} {RNA1509_50639, RNA1509_57017} {RNA1310_23100.1, RNA1509_50639, RNA1509_57017} {RNA1509_50639, RNA1509_57017, RNA815_25397}
7. MligTC455_03485 626 13.03 Mlig455_036411, Mlig455_054583

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.414

 DESI1 0.955 - - - - - 0.955

Mlig455_036411 {REF} {Length: 302} {NoTransDecoderORF} {RNA1509_33079} {RNA1310_40757} {RNA815_26412}

Mlig455_054583 {REF} {Length: 2410} {Pfam: PPPDE putative peptidase domain [PF05903.16, score=137.0]} {Human: ENSG00000100418, DESI1, desumoylating isopeptidase 1, [RH, Score=182, Expect=2e-55]} {Mouse: ENSMUSG00000022472, Desi1, desumoylating isopeptidase 1, [RH, Score=183, Expect=6e-56]} {Celegans: WBGene00018090, F36D4.5, [Score=66.6, Expect=6e-12]} {Smed: dd_Smed_v6_30764_0_1, dd_Smed_v6_30764_0_1, [RH, Score=123, Expect=2e-33]} {RNA1509_16841, RNA1509_23047, RNA1509_50764} {RNA1310_17059, RNA1509_23047, RNA1509_50764} {RNA1509_23047, RNA1509_50764, RNA815_26559.1}
8. MligTC455_46735 771 16.07 Mlig455_028901

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.417

 0.954 - - - 0.954 - - Mlig455_028901 {REF} {Length: 1588} {RNA1509_17335, RNA1509_37656, RNA1509_56516} {RNA1310_10469, RNA1509_17335, RNA1509_37656, RNA1509_56516} {RNA1509_17335, RNA1509_37656, RNA1509_56516, RNA815_8784.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA