Data search
Results for MligTC455_22157
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_22157 | 233 | 4.85 | Mlig455_054970 | Neo: - Age: - |
IFRD1 | Mlig455_054970 {REF} {Length: 1892} {TRANSSPLICED} {Pfam: Interferon-related developmental regulator (IFRD) [PF05004.15, score=159.8]} {Human: ENSG00000006652, IFRD1, interferon related developmental regulator 1, [Score=141, Expect=8e-37]} {Mouse: ENSMUSG00000001627, Ifrd1, interferon-related developmental regulator 1, [Score=144, Expect=6e-38]} {Dmel: FBgn0051694, CG31694, [Score=153, Expect=1e-41]} {Smed: dd_Smed_v6_5819_0_1, dd_Smed_v6_5819_0_1, [Score=159, Expect=9e-44]} {RNA1509_5679} {RNA1310_14644} {RNA815_5470} |
Cumulative graph for MligTC455_22157
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -6.154 | 2.795 | 0.12590 | 0.72044 | |
| RegionR2 | 0.337 | 2.795 | 0.71823 | 1.00000 | |
| RegionR3 | 0.336 | 2.795 | 0.70865 | 1.00000 | |
| RegionR4 | 1.093 | 2.795 | 0.23981 | 0.53601 | |
| RegionR5 | 1.085 | 2.795 | 0.20086 | 0.49171 | |
| RegionR6 | 0.755 | 2.795 | 0.44486 | 1.00000 | |
| RegionR7 | 0.904 | 2.795 | 0.42412 | 1.00000 | |
| RegionR8 | 1.644 | 2.795 | 0.16861 | 0.74135 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -0.318 | 2.795 | 0.99997 | 1.00000 | |
| RegenerationR2 | -0.151 | 2.795 | 0.80381 | 0.99080 | |
| RegenerationR3 | 1.154 | 2.795 | 0.08211 | 0.46944 | |
| RegenerationR4 | 0.304 | 2.795 | 0.63319 | 0.92451 | |
| RegenerationR5 | 0.813 | 2.795 | 0.14019 | 0.55278 | |
| RegenerationR6 | 0.767 | 2.795 | 0.24648 | 0.59491 | |
| RegenerationBL | -0.651 | 2.795 | 0.43046 | 0.79846 | |
| RegenerationTP | -0.372 | 2.795 | 0.66103 | 0.99424 |
Genes with expression patterns similar to MligTC455_22157
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_22157 | 233 | 4.85 | Mlig455_054970 | Neo: - Age: - |
IFRD1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_054970 {REF} {Length: 1892} {TRANSSPLICED} {Pfam: Interferon-related developmental regulator (IFRD) [PF05004.15, score=159.8]} {Human: ENSG00000006652, IFRD1, interferon related developmental regulator 1, [Score=141, Expect=8e-37]} {Mouse: ENSMUSG00000001627, Ifrd1, interferon-related developmental regulator 1, [Score=144, Expect=6e-38]} {Dmel: FBgn0051694, CG31694, [Score=153, Expect=1e-41]} {Smed: dd_Smed_v6_5819_0_1, dd_Smed_v6_5819_0_1, [Score=159, Expect=9e-44]} {RNA1509_5679} {RNA1310_14644} {RNA815_5470} |
| 2. | MligTC455_25032 | 928 | 19.34 | Mlig455_061298, Mlig455_061299, Mlig455_062656 | Neo: Irradiation Age: - Region-enriched R5: 1.890/0.00071 |
RFC3 | 2.488 | - | - | - | 0.952 | 0.828 | 0.708 | Mlig455_061298 {REF} {Length: 1322} {TRANSSPLICED} {Pfam: DNA polymerase III, delta subunit [PF13177.8, score=42.0]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=36.2]; Rad17 P-loop domain [PF03215.17, score=27.0]; DNA polymerase III, delta subunit [PF06144.15, score=25.4]; AAA ATPase domain [PF13191.8, score=25.0]; AAA domain (dynein-related subfamily) [PF07728.16, score=19.6]} {Human: ENSG00000133119, RFC3, replication factor C subunit 3, [RH, Score=493, Expect=1e-175]} {Mouse: ENSMUSG00000033970, Rfc3, replication factor C (activator 1) 3, [RH, Score=497, Expect=1e-177]} {Dmel: FBgn0028700, RfC38, Replication factor C 38kD subunit, [RH, Score=480, Expect=6e-171]} {Celegans: WBGene00004339, rfc-3, RFC (DNA replication factor) family, [RH, Score=368, Expect=7e-127]} {Smed: dd_Smed_v6_9695_0_1, dd_Smed_v6_9695_0_1, [RH, Score=444, Expect=3e-157]} {RNA1509_12650} {RNA1310_19461.1} {RNA815_9346} Mlig455_061299 {REF} {Length: 923} {RNA1509_12650} {RNA1310_19461.1} {RNA815_61018} Mlig455_062656 {REF} {Length: 2879} {TRANSSPLICED} {Pfam: DNA polymerase III, delta subunit [PF13177.8, score=42.0]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=36.2]; Rad17 P-loop domain [PF03215.17, score=27.0]; AAA ATPase domain [PF13191.8, score=26.1]; DNA polymerase III, delta subunit [PF06144.15, score=25.4]; AAA domain (dynein-related subfamily) [PF07728.16, score=19.6]} {Human: ENSG00000133119, RFC3, replication factor C subunit 3, [RH, Score=493, Expect=7e-176]} {Mouse: ENSMUSG00000033970, Rfc3, replication factor C (activator 1) 3, [RH, Score=499, Expect=4e-178]} {Dmel: FBgn0028700, RfC38, Replication factor C 38kD subunit, [RH, Score=481, Expect=3e-171]} {Celegans: WBGene00004339, rfc-3, RFC (DNA replication factor) family, [RH, Score=368, Expect=5e-127]} {Smed: dd_Smed_v6_9695_0_1, dd_Smed_v6_9695_0_1, [RH, Score=447, Expect=4e-158]} {RNA1509_12650} {RNA1310_19461.1, RNA1509_12650} {RNA1509_12650, RNA815_9346} |
| 3. | MligTC455_42476 | 324 | 6.76 | Mlig455_014602 | Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.253 Region-enriched R5: 1.915/0.00284 |
OPA3 | 1.75 | - | - | - | - | 0.793 | 0.957 | Mlig455_014602 {REF} {Length: 925} {Pfam: Optic atrophy 3 protein (OPA3) [PF07047.14, score=121.1]} {Human: ENSG00000125741, OPA3, OPA3, outer mitochondrial membrane lipid metabolism regulator, [RH, Score=124, Expect=5e-36]} {Mouse: ENSMUSG00000052214, Opa3, optic atrophy 3, [RH, Score=126, Expect=8e-37]} {Dmel: FBgn0039126, CG13601, [Score=120, Expect=5e-34]} {Smed: dd_Smed_v6_2252_0_1, dd_Smed_v6_2252_0_1, [Score=121, Expect=4e-36]} {RNA1509_21399} {RNA1310_62363} {RNA815_27391.2} |
| 4. | MligTC455_34513 | 190 | 3.95 | Mlig455_038168 | Neo: - |
TTN | 0.971 | - | - | - | 0.971 | - | - | Mlig455_038168 {REF} {Length: 2523} {Pfam: WH2 motif [PF02205.22, score=32.0]} {Human: ENSG00000155657, TTN, titin, [Score=53.5, Expect=1e-06]} {Dmel: FBgn0264087, Slob, Slowpoke binding protein, [Score=98.2, Expect=4e-21]} {Smed: dd_Smed_v6_5192_0_1, dd_Smed_v6_5192_0_1, [Score=47.8, Expect=5e-06]} {RNA1509_51667} {RNA1310_21971.1} {RNA815_9170} |
| 5. | MligTC455_16831 | 129 | 2.69 | Mlig455_040404 | Neo: - Age: Up-Down-Down |
0.959 | - | - | 0.959 | - | - | - | Mlig455_040404 {REF} {Length: 3079} {RNA1509_56144} {RNA1310_34428} {RNA815_39130} | |
| 6. | MligTC455_31753 | 424 | 8.84 | Mlig455_020445 | Neo: Int S/G2/M Age: logFC(26M/2M)=-0.395 |
TRAPPC2L | 0.956 | - | - | 0.956 | - | - | - | Mlig455_020445 {REF} {Length: 1583} {TRANSSPLICED} {Pfam: Sedlin, N-terminal conserved region [PF04628.15, score=80.9]} {Human: ENSG00000167515, TRAPPC2L, trafficking protein particle complex 2 like, [RH, Score=140, Expect=3e-43]} {Mouse: ENSMUSG00000015013, Trappc2l, trafficking protein particle complex 2-like, [RH, Score=141, Expect=8e-44]} {Dmel: FBgn0033605, CG9067, [RH, Score=120, Expect=9e-36]} {Celegans: WBGene00044604, T10F2.5, [RH, Score=67.0, Expect=6e-15]} {Smed: dd_Smed_v6_1506_0_1, dd_Smed_v6_1506_0_1, [RH, Score=108, Expect=6e-31]} {RNA1509_16235} {RNA1310_27236} {RNA815_17508} |
| 7. | MligTC455_26130 | 137 | 2.86 | Mlig455_036940 | Neo: - Age: - |
0.953 | - | - | 0.953 | - | - | - | Mlig455_036940 {REF} {Length: 3889} {tRNA: Val(AAC),pseudo, score=28.6} {RNA1509_46710} {RNA1310_18270, RNA1509_46710} {RNA1509_46710, RNA815_15860} | |
| 8. | MligTC455_12916 | 121 | 2.52 | Mlig455_069469 | Neo: - Age: - |
DHRS4 | 0.952 | - | - | 0.952 | - | - | - | Mlig455_069469 {REF} {Length: 1357} {TRANSSPLICED} {Pfam: Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=192.2]; short chain dehydrogenase [PF00106.27, score=156.8]; KR domain [PF08659.12, score=45.5]} {Human: ENSG00000284807, DHRS4, dehydrogenase/reductase 4, [Score=108, Expect=1e-27]; ENSG00000157326, DHRS4, dehydrogenase/reductase 4, [Score=108, Expect=1e-27]; ENSG00000100867, DHRS2, dehydrogenase/reductase 2, [Score=105, Expect=4e-26]; ENSG00000169738, DCXR, dicarbonyl and L-xylulose reductase, [Score=103, Expect=5e-26]} {Mouse: ENSMUSG00000025150, Cbr2, carbonyl reductase 2, [Score=103, Expect=4e-26]; ENSMUSG00000039450, Dcxr, dicarbonyl L-xylulose reductase, [Score=103, Expect=4e-26]; ENSMUSG00000030825, Hsd17b14, hydroxysteroid (17-beta) dehydrogenase 14, [Score=100, Expect=1e-24]} {Dmel: FBgn0051548, CG31548, [RH, Score=281, Expect=3e-95]} {Celegans: WBGene00021646, Y47G6A.21, [RH, Score=234, Expect=8e-77]} {Smed: dd_Smed_v6_4614_0_1, dd_Smed_v6_4614_0_1, [RH, Score=248, Expect=3e-82]} {RNA1509_25836, RNA1509_47368} {RNA1310_34791.1, RNA1509_25836, RNA1509_47368} {RNA1509_25836, RNA1509_47368, RNA815_7074} |
| 9. | MligTC455_18595 | 707 | 14.72 | Mlig455_040403, Mlig455_050406 | Neo: Int S/G2/M Age: Up-Down-Down |
DIS3L2 | 0.952 | - | - | - | - | - | 0.952 | Mlig455_040403 {REF} {Length: 5152} {TRANSSPLICED} {Pfam: RNB domain [PF00773.21, score=295.6]; Dis3-like cold-shock domain 2 (CSD2) [PF17849.3, score=27.0]} {Human: ENSG00000144535, DIS3L2, DIS3 like 3'-5' exoribonuclease 2, [Score=301, Expect=3e-86]} {Mouse: ENSMUSG00000053333, Dis3l2, DIS3 like 3'-5' exoribonuclease 2, [Score=304, Expect=1e-87]} {Dmel: FBgn0035111, Dis3l2, Dis3 like 3'-5' exoribonuclease 2, [Score=256, Expect=2e-70]} {Celegans: WBGene00018612, disl-2, DIS3-like exonuclease 2, [Score=253, Expect=2e-70]} {Smed: dd_Smed_v6_7044_0_1, dd_Smed_v6_7044_0_1, [Score=281, Expect=3e-80]} {RNA1509_46726} {RNA1310_3315} {RNA815_2503} Mlig455_050406 {REF} {Length: 4968} {TRANSSPLICED} {Pfam: RNB domain [PF00773.21, score=295.9]; Dis3-like cold-shock domain 2 (CSD2) [PF17849.3, score=27.1]} {Human: ENSG00000144535, DIS3L2, DIS3 like 3'-5' exoribonuclease 2, [Score=298, Expect=2e-85]} {Mouse: ENSMUSG00000053333, Dis3l2, DIS3 like 3'-5' exoribonuclease 2, [Score=302, Expect=6e-87]} {Dmel: FBgn0035111, Dis3l2, Dis3 like 3'-5' exoribonuclease 2, [Score=257, Expect=2e-70]} {Celegans: WBGene00018612, disl-2, DIS3-like exonuclease 2, [Score=254, Expect=1e-70]} {Smed: dd_Smed_v6_7044_0_1, dd_Smed_v6_7044_0_1, [Score=280, Expect=7e-80]} {RNA1509_46726} {RNA1310_3315, RNA1509_46726} {RNA1509_46726, RNA815_2503} |
| 10. | MligTC455_47371 | 539 | 11.23 | Mlig455_051289 | Neo: - Age: logFC(26M/2M)=0.480 Region-enriched R5: 1.199/0.00193 |
PIPOX | 0.952 | - | - | - | 0.952 | - | - | Mlig455_051289 {REF} {Length: 2874} {TRANSSPLICED} {Pfam: FAD dependent oxidoreductase [PF01266.26, score=348.8]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=53.3]; Flavin containing amine oxidoreductase [PF01593.26, score=52.6]; HI0933-like protein [PF03486.16, score=40.7]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=38.2]; FAD-NAD(P)-binding [PF13454.8, score=36.5]; FAD binding domain [PF00890.26, score=32.5]; FAD binding domain [PF01494.21, score=27.8]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=23.9]; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain [PF02737.20, score=22.2]; Ketopantoate reductase PanE/ApbA [PF02558.18, score=22.1]; Glucose inhibited division protein A [PF01134.24, score=21.6]} {Human: ENSG00000179761, PIPOX, pipecolic acid and sarcosine oxidase, [RH, Score=253, Expect=3e-76]} {Mouse: ENSMUSG00000017453, Pipox, pipecolic acid oxidase, [RH, Score=250, Expect=3e-75]} {Celegans: WBGene00015783, C15B12.1, Putative sarcosine oxidase, [RH, Score=203, Expect=4e-58]} {RNA1509_43148} {RNA1310_18619.1} {RNA815_18141} |
| 11. | MligTC455_42571 | 3251 | 67.72 | Mlig455_035168 | Neo: - Age: logFC(26M/2M)=-0.472 Region-enriched R4: 1.085/0.02080 |
RIDA | 0.95 | - | - | - | - | 0.950 | - | Mlig455_035168 {REF} {Length: 747} {TRANSSPLICED} {Pfam: Endoribonuclease L-PSP [PF01042.23, score=139.7]} {Human: ENSG00000132541, RIDA, reactive intermediate imine deaminase A homolog, [RH, Score=149, Expect=4e-47]} {Mouse: ENSMUSG00000022323, Rida, reactive intermediate imine deaminase A homolog, [RH, Score=151, Expect=5e-48]} {Dmel: FBgn0086691, UK114, [RH, Score=127, Expect=2e-38]} {Celegans: WBGene00016011, C23G10.2, RutC family protein C23G10.2, [RH, Score=143, Expect=2e-44]} {Smed: dd_Smed_v6_1895_0_1, dd_Smed_v6_1895_0_1, [RH, Score=154, Expect=3e-49]} {RNA1509_10509, RNA1509_25270, RNA1509_5491} {RNA1310_43287, RNA1509_10509, RNA1509_25270, RNA1509_5491} {RNA1509_10509, RNA1509_25270, RNA1509_5491, RNA815_23194} |
Berezikov Lab - 2020-2021 © ERIBA