M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22692

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22692 799 16.64 Mlig455_044127

Neo: -

Age: -

 DAB2IP Mlig455_044127 {REF} {Length: 6655} {Pfam: GTPase-activator protein for Ras-like GTPase [PF00616.21, score=65.4]; C2 domain [PF00168.32, score=34.1]} {Human: ENSG00000136848, DAB2IP, DAB2 interacting protein, [RH, Score=377, Expect=1e-110]; ENSG00000075391, RASAL2, RAS protein activator like 2, [RH, Score=359, Expect=2e-104]} {Mouse: ENSMUSG00000026883, Dab2ip, disabled 2 interacting protein, [RH, Score=379, Expect=5e-112]; ENSMUSG00000070565, Rasal2, RAS protein activator like 2, [RH, Score=361, Expect=2e-104]} {Dmel: FBgn0261570, CG42684, [RH, Score=377, Expect=4e-108]} {Celegans: WBGene00001516, gap-2, Ras GTPase-activating protein gap-2, [RH, Score=368, Expect=2e-107]} {Smed: dd_Smed_v6_6499_0_1, dd_Smed_v6_6499_0_1, [RH, Score=290, Expect=3e-80]} {RNA1509_11270} {RNA1310_3888.1} {RNA815_1470.1}

Cumulative graph for MligTC455_22692

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.062 4.301 0.94429 1.00000
RegionR2 0.29 4.301 0.46527 0.85186
RegionR3 0.328 4.301 0.28114 0.82450
RegionR4 -0.072 4.301 0.84835 1.00000
RegionR5 0.202 4.301 0.46380 0.82607
RegionR6 -0.098 4.301 0.76320 1.00000
RegionR7 -0.708 4.301 0.12436 0.66430
RegionR8 -0.004 4.301 0.99422 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.97 4.301 0.07830 0.76995
RegenerationR2 0.203 4.301 0.53002 0.88433
RegenerationR3 0.191 4.301 0.58709 0.90226
RegenerationR4 -0.021 4.301 0.95612 1.00000
RegenerationR5 -0.159 4.301 0.63179 0.92304
RegenerationR6 0.402 4.301 0.28829 0.63841
RegenerationBL 0.285 4.301 0.56138 0.91640
RegenerationTP 0.387 4.301 0.44207 0.86142


Genes with expression patterns similar to MligTC455_22692

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22692 799 16.64 Mlig455_044127

Neo: -

Age: -

 DAB2IP 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_044127 {REF} {Length: 6655} {Pfam: GTPase-activator protein for Ras-like GTPase [PF00616.21, score=65.4]; C2 domain [PF00168.32, score=34.1]} {Human: ENSG00000136848, DAB2IP, DAB2 interacting protein, [RH, Score=377, Expect=1e-110]; ENSG00000075391, RASAL2, RAS protein activator like 2, [RH, Score=359, Expect=2e-104]} {Mouse: ENSMUSG00000026883, Dab2ip, disabled 2 interacting protein, [RH, Score=379, Expect=5e-112]; ENSMUSG00000070565, Rasal2, RAS protein activator like 2, [RH, Score=361, Expect=2e-104]} {Dmel: FBgn0261570, CG42684, [RH, Score=377, Expect=4e-108]} {Celegans: WBGene00001516, gap-2, Ras GTPase-activating protein gap-2, [RH, Score=368, Expect=2e-107]} {Smed: dd_Smed_v6_6499_0_1, dd_Smed_v6_6499_0_1, [RH, Score=290, Expect=3e-80]} {RNA1509_11270} {RNA1310_3888.1} {RNA815_1470.1}
2. MligTC455_29527 1639 34.14 Mlig455_019632, Mlig455_059057

Neo: Int S/G2/M

Age: -

 ACIN1 1.688 - - - 0.721 0.967 -

Mlig455_019632 {REF} {Length: 3355} {TRANSSPLICED} {Pfam: RNSP1-SAP18 binding (RSB) motif [PF16294.7, score=56.5]} {Human: ENSG00000100813, ACIN1, apoptotic chromatin condensation inducer 1, [RH, Score=74.7, Expect=2e-13]} {Mouse: ENSMUSG00000022185, Acin1, apoptotic chromatin condensation inducer 1, [RH, Score=74.7, Expect=1e-13]} {Dmel: FBgn0263198, Acn, Acinus, [RH, Score=94.0, Expect=7e-20]} {Smed: dd_Smed_v6_4153_0_1, dd_Smed_v6_4153_0_1, [RH, Score=79.0, Expect=2e-15]} {RNA1509_6966} {RNA1310_4635} {RNA815_5975}

Mlig455_059057 {REF} {Length: 3216} {TRANSSPLICED} {Pfam: RNSP1-SAP18 binding (RSB) motif [PF16294.7, score=56.0]} {Human: ENSG00000100813, ACIN1, apoptotic chromatin condensation inducer 1, [RH, Score=74.3, Expect=3e-13]} {Mouse: ENSMUSG00000022185, Acin1, apoptotic chromatin condensation inducer 1, [RH, Score=74.7, Expect=1e-13]} {Dmel: FBgn0263198, Acn, Acinus, [RH, Score=93.6, Expect=9e-20]} {Smed: dd_Smed_v6_4153_0_1, dd_Smed_v6_4153_0_1, [RH, Score=78.2, Expect=3e-15]} {RNA1509_13971, RNA1509_42058, RNA1509_51683, RNA1509_6966} {RNA1310_4635, RNA1509_13971, RNA1509_42058, RNA1509_51683, RNA1509_6966} {RNA1509_13971, RNA1509_42058, RNA1509_51683, RNA1509_6966, RNA815_5975}
3. MligTC455_50433 6772 141.08 Mlig455_052577, Mlig455_052592

Neo: -

Age: Down-Up-Up

 TNR 0.969 - - - - - 0.969

Mlig455_052577 {REF} {Length: 2810} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=125.6]; PAN domain [PF00024.28, score=20.6]} {Human: ENSG00000116147, TNR, tenascin R, [Score=109, Expect=4e-26]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=110, Expect=2e-26]} {Dmel: FBgn0034160, CG5550, [Score=102, Expect=9e-26]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=98.2, Expect=7e-23]} {RNA1509_15461} {RNA1310_26562} {RNA815_14700}

Mlig455_052592 {REF} {Length: 2429} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=125.6]; PAN domain [PF00024.28, score=20.6]} {Human: ENSG00000116147, TNR, tenascin R, [Score=109, Expect=4e-26]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=110, Expect=2e-26]} {Dmel: FBgn0034160, CG5550, [Score=102, Expect=9e-26]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=98.2, Expect=7e-23]} {RNA1509_15461} {RNA1310_26562} {RNA815_14700}
4. MligTC455_16430 401 8.36 Mlig455_034784

Neo: -

Age: logFC(26M/2M)=-0.294

 0.958 - - - - 0.958 - Mlig455_034784 {REF} {Length: 2260} {Dmel: FBgn0033661, CG13185, [Score=62.8, Expect=6e-10]} {RNA1509_11490} {RNA1310_53140} {RNA815_7177}
5. MligTC455_53441 565 11.76 Mlig455_021329

Neo: -

Age: -

 RPL6 0.958 - - - - 0.958 - Mlig455_021329 {REF} {Length: 1781} {Pfam: Ribosomal protein L6e [PF01159.21, score=102.1]; EF-hand domain pair [PF13499.8, score=45.0]; EF hand [PF00036.34, score=44.8]; EF-hand domain [PF13405.8, score=37.9]; EF hand [PF13202.8, score=30.8]; EF-hand domain pair [PF13833.8, score=22.9]} {Human: ENSG00000089009, RPL6, ribosomal protein L6, [RH, Score=197, Expect=6e-60]} {Mouse: ENSMUSG00000029614, Rpl6, ribosomal protein L6, [RH, Score=192, Expect=5e-58]} {Dmel: FBgn0039857, RpL6, Ribosomal protein L6, [Score=186, Expect=3e-56]} {Celegans: WBGene00004417, rpl-6, 60S ribosomal protein L6, [RH, Score=155, Expect=7e-45]} {Smed: dd_Smed_v6_839_0_1, dd_Smed_v6_839_0_1, [RH, Score=177, Expect=2e-52]} {RNA1509_25138} {RNA1310_21996, RNA1509_25138} {RNA1509_25138, RNA815_23774}
6. MligTC455_40904 823 17.15 Mlig455_001137, Mlig455_001299

Neo: -

Age: Up-Down-Down

 0.951 - - - - 0.951 -

Mlig455_001137 {REF} {Length: 3650} {Celegans: WBGene00008194, C49C3.4, [RH, Score=49.7, Expect=9e-06]} {RNA1509_50622} {RNA1310_2292} {RNA815_4180}

Mlig455_001299 {REF} {Length: 3885} {Pfam: Mab-21 protein [PF03281.16, score=19.5]} {Celegans: WBGene00008194, C49C3.4, [RH, Score=50.1, Expect=9e-06]} {RNA1509_50622} {RNA1310_2292} {RNA815_4180}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA