M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22798

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22798 1016 21.17 Mlig455_009157, Mlig455_009597, Mlig455_027058, Mlig455_027060

Neo: -

Age: logFC(26M/2M)=0.286

 HMGXB4

Mlig455_009157 {REF} {Length: 1740} {TRANSSPLICED} {Human: ENSG00000100281, HMGXB4, HMG-box containing 4, [RH, Score=90.9, Expect=2e-19]} {Mouse: ENSMUSG00000034518, Hmgxb4, HMG box domain containing 4, [RH, Score=88.2, Expect=1e-18]} {Dmel: FBgn0029936, CG4617, [RH, Score=68.2, Expect=2e-12]} {RNA1509_35374, RNA1509_55891} {RNA1310_28785.1, RNA1509_55891} {RNA1509_55891, RNA815_13145}

Mlig455_009597 {REF} {Length: 1973} {TRANSSPLICED} {Human: ENSG00000100281, HMGXB4, HMG-box containing 4, [RH, Score=90.9, Expect=2e-19]} {Mouse: ENSMUSG00000034518, Hmgxb4, HMG box domain containing 4, [RH, Score=88.6, Expect=8e-19]} {Dmel: FBgn0029936, CG4617, [RH, Score=70.1, Expect=6e-13]} {RNA1509_35374} {RNA1310_28785.1} {RNA815_13145}

Mlig455_027058 {REF} {Length: 3108} {TRANSSPLICED} {RNA1509_45034} {RNA1310_28785.1} {RNA815_13145}

Mlig455_027060 {REF} {Length: 2584} {TRANSSPLICED} {Human: ENSG00000100281, HMGXB4, HMG-box containing 4, [RH, Score=90.9, Expect=2e-19]} {Mouse: ENSMUSG00000034518, Hmgxb4, HMG box domain containing 4, [RH, Score=88.6, Expect=8e-19]} {Dmel: FBgn0029936, CG4617, [RH, Score=70.1, Expect=6e-13]} {RNA1509_35374} {RNA1310_28785.1, RNA1509_35374} {RNA1509_35374, RNA815_13145}

Cumulative graph for MligTC455_22798

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.185 4.683 0.45611 1.00000
RegionR2 0.287 4.683 0.69352 1.00000
RegionR3 -0.292 4.683 0.62533 1.00000
RegionR4 1.306 4.683 0.05017 0.19305
RegionR5 0.141 4.683 0.80298 1.00000
RegionR6 -0.635 4.683 0.31230 0.90145
RegionR7 0.11 4.683 0.86570 1.00000
RegionR8 0.269 4.683 0.69858 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.3 4.683 0.34054 1.00000
RegenerationR2 0.642 4.683 0.33166 0.76849
RegenerationR3 0.733 4.683 0.32858 0.75463
RegenerationR4 0.048 4.683 0.94758 1.00000
RegenerationR5 1.08 4.683 0.12229 0.52336
RegenerationR6 0.989 4.683 0.18073 0.51568
RegenerationBL 0.411 4.683 0.56956 0.92339
RegenerationTP 0.923 4.683 0.18963 0.62800


Genes with expression patterns similar to MligTC455_22798

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22798 1016 21.17 Mlig455_009157, Mlig455_009597, Mlig455_027058, Mlig455_027060

Neo: -

Age: logFC(26M/2M)=0.286

 HMGXB4 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_009157 {REF} {Length: 1740} {TRANSSPLICED} {Human: ENSG00000100281, HMGXB4, HMG-box containing 4, [RH, Score=90.9, Expect=2e-19]} {Mouse: ENSMUSG00000034518, Hmgxb4, HMG box domain containing 4, [RH, Score=88.2, Expect=1e-18]} {Dmel: FBgn0029936, CG4617, [RH, Score=68.2, Expect=2e-12]} {RNA1509_35374, RNA1509_55891} {RNA1310_28785.1, RNA1509_55891} {RNA1509_55891, RNA815_13145}

Mlig455_009597 {REF} {Length: 1973} {TRANSSPLICED} {Human: ENSG00000100281, HMGXB4, HMG-box containing 4, [RH, Score=90.9, Expect=2e-19]} {Mouse: ENSMUSG00000034518, Hmgxb4, HMG box domain containing 4, [RH, Score=88.6, Expect=8e-19]} {Dmel: FBgn0029936, CG4617, [RH, Score=70.1, Expect=6e-13]} {RNA1509_35374} {RNA1310_28785.1} {RNA815_13145}

Mlig455_027058 {REF} {Length: 3108} {TRANSSPLICED} {RNA1509_45034} {RNA1310_28785.1} {RNA815_13145}

Mlig455_027060 {REF} {Length: 2584} {TRANSSPLICED} {Human: ENSG00000100281, HMGXB4, HMG-box containing 4, [RH, Score=90.9, Expect=2e-19]} {Mouse: ENSMUSG00000034518, Hmgxb4, HMG box domain containing 4, [RH, Score=88.6, Expect=8e-19]} {Dmel: FBgn0029936, CG4617, [RH, Score=70.1, Expect=6e-13]} {RNA1509_35374} {RNA1310_28785.1, RNA1509_35374} {RNA1509_35374, RNA815_13145}
2. MligTC455_52465 414 8.63 Mlig455_001618

Neo: -

Age: -

Region-enriched R2: 1.980/0.03235

 BAG1 1.817 - - 0.968 - 0.849 - Mlig455_001618 {REF} {Length: 1592} {TRANSSPLICED} {Pfam: Ubiquitin family [PF00240.25, score=38.5]; Ubiquitin-like domain [PF18037.3, score=26.6]; TANK binding kinase 1 ubiquitin-like domain [PF18396.3, score=20.9]} {Human: ENSG00000107262, BAG1, BCL2 associated athanogene 1, [RH, Score=81.6, Expect=8e-19]} {Mouse: ENSMUSG00000028416, Bag1, BCL2-associated athanogene 1, [RH, Score=74.3, Expect=3e-16]} {RNA1509_15630} {RNA1310_15366, RNA1509_15630} {RNA1509_15630, RNA815_9266.1}
3. MligTC455_40494 1111 23.14 Mlig455_063116

Neo: -

Age: Up-Down-Up

Region-enriched R4: 1.130/0.00688

 BCAS3 1.675 - - - 0.964 - 0.711 Mlig455_063116 {REF} {Length: 6054} {TRANSSPLICED} {Pfam: Breast carcinoma amplified sequence 3 [PF12490.10, score=59.8]} {Human: ENSG00000141376, BCAS3, BCAS3, microtubule associated cell migration factor, [RH, Score=256, Expect=3e-72]} {Mouse: ENSMUSG00000059439, Bcas3, breast carcinoma amplified sequence 3, [RH, Score=260, Expect=7e-74]} {Dmel: FBgn0266019, rudhira, [RH, Score=197, Expect=1e-51]} {Celegans: WBGene00018953, F56C9.10, [RH, Score=169, Expect=5e-43]} {Smed: dd_Smed_v6_7548_0_1, dd_Smed_v6_7548_0_1, [RH, Score=167, Expect=8e-43]} {RNA1509_18520, RNA1509_18903, RNA1509_33364, RNA1509_36187, RNA1509_3732} {RNA1310_7059, RNA1509_18520, RNA1509_18903, RNA1509_33364, RNA1509_36187} {RNA1509_18520, RNA1509_18903, RNA1509_33364, RNA1509_36187, RNA815_2410}
4. MligTC455_40493 1086 22.62 Mlig455_063091

Neo: -

Age: -

Region-enriched R4: 1.094/0.01098

 BCAS3 1.674 - - - 0.962 - 0.712 Mlig455_063091 {REF} {Length: 5479} {TRANSSPLICED} {Pfam: Breast carcinoma amplified sequence 3 [PF12490.10, score=30.6]} {Human: ENSG00000141376, BCAS3, BCAS3, microtubule associated cell migration factor, [Score=231, Expect=2e-63]} {Mouse: ENSMUSG00000059439, Bcas3, breast carcinoma amplified sequence 3, [Score=233, Expect=2e-64]} {Dmel: FBgn0266019, rudhira, [RH, Score=159, Expect=1e-39]} {Celegans: WBGene00018953, F56C9.10, [RH, Score=162, Expect=8e-41]} {Smed: dd_Smed_v6_7548_0_1, dd_Smed_v6_7548_0_1, [RH, Score=157, Expect=8e-40]} {RNA1509_3732} {RNA1310_7059} {RNA815_2410}
5. MligTC455_46769 561 11.69 Mlig455_016191

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.380

 FAM76A 0.967 - - - 0.967 - - Mlig455_016191 {REF} {Length: 3032} {TRANSSPLICED} {Pfam: FAM76 protein [PF16046.7, score=150.4]} {Human: ENSG00000009780, FAM76A, family with sequence similarity 76 member A, [RH, Score=104, Expect=1e-24]} {Mouse: ENSMUSG00000037808, Fam76b, family with sequence similarity 76, member B, [RH, Score=108, Expect=6e-26]; ENSMUSG00000028878, Fam76a, family with sequence similarity 76, member A, [RH, Score=103, Expect=3e-24]} {Celegans: WBGene00019399, K04F10.7, [RH, Score=53.9, Expect=6e-08]} {Smed: dd_Smed_v6_6213_0_1, dd_Smed_v6_6213_0_1, [RH, Score=134, Expect=2e-35]} {RNA1509_24429, RNA1509_52669, RNA1509_54090} {RNA1310_21568.1, RNA1509_24429, RNA1509_52669, RNA1509_54090} {RNA1509_24429, RNA1509_52669, RNA1509_54090, RNA815_22662.1}
6. MligTC455_35818 1219 25.4 Mlig455_017352, Mlig455_017435

Neo: -

Age: Up-Down-Down

 ARHGEF12 0.961 - - - 0.961 - -

Mlig455_017352 {REF} {Length: 8693} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=20.8} {Pfam: PDZ domain [PF17820.3, score=36.8]; PDZ domain [PF00595.26, score=36.0]; Regulator of G protein signalling-like domain [PF09128.13, score=28.2]; PDZ domain [PF13180.8, score=27.9]; RhoGEF domain [PF00621.22, score=24.1]} {Human: ENSG00000196914, ARHGEF12, Rho guanine nucleotide exchange factor 12, [Score=61.2, Expect=2e-08]} {Mouse: ENSMUSG00000059495, Arhgef12, Rho guanine nucleotide exchange factor (GEF) 12, [Score=60.1, Expect=3e-08]} {Dmel: FBgn0263846, CG43707, [Score=55.5, Expect=7e-07]} {Celegans: WBGene00006468, rhgf-1, RHo Guanine nucleotide exchange Factor, [Score=54.7, Expect=8e-07]} {RNA1509_9517} {RNA1310_569.3} {RNA815_247}

Mlig455_017435 {REF} {Length: 8120} {TRANSSPLICED} {tRNA: Val(CAC),pseudo, score=20.7} {Pfam: Regulator of G protein signalling-like domain [PF09128.13, score=26.7]; RhoGEF domain [PF00621.22, score=22.3]} {RNA1509_9517} {RNA1310_759.2} {RNA815_247}
7. MligTC455_23369 566 11.79 Mlig455_065621

Neo: -

Age: Up-Down-Up

Region-enriched R2: 2.701/0.03747

 HYDIN 0.955 - - - - 0.955 - Mlig455_065621 {REF} {Length: 7684} {Pfam: Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin [PF15780.7, score=100.7]; Transmembrane protein 131-like N-terminal [PF12371.10, score=42.4]; Protein of unknown function (DUF1573) [PF07610.13, score=39.4]; MYCBP-associated protein family [PF14646.8, score=33.6]; MSP (Major sperm protein) domain [PF00635.28, score=22.6]} {Human: ENSG00000283022, HYDIN, HYDIN, axonemal central pair apparatus protein, [Score=1239, Expect=0.0]; ENSG00000157423, HYDIN, HYDIN, axonemal central pair apparatus protein, [Score=1239, Expect=0.0]} {Mouse: ENSMUSG00000059854, Hydin, HYDIN, axonemal central pair apparatus protein, [Score=1286, Expect=0.0]} {Smed: dd_Smed_v6_7302_1_1, dd_Smed_v6_7302_1_1, [Score=1395, Expect=0.0]} {RNA1509_30047} {RNA1310_26.1} {RNA815_225}
8. MligTC455_33557 851 17.72 Mlig455_011611, Mlig455_049980

Neo: -

Age: -

 DYM 0.954 - - - 0.954 - -

Mlig455_011611 {REF} {Length: 4670} {TRANSSPLICED} {Pfam: Dyggve-Melchior-Clausen syndrome protein [PF09742.11, score=419.0]; High-temperature-induced dauer-formation protein [PF12722.9, score=38.4]} {Human: ENSG00000141627, DYM, dymeclin, [RH, Score=355, Expect=4e-113]} {Mouse: ENSMUSG00000035765, Dym, dymeclin, [RH, Score=373, Expect=5e-120]} {Dmel: FBgn0027607, CG8230, [RH, Score=346, Expect=9e-110]} {Celegans: WBGene00008136, C47D12.2, [RH, Score=283, Expect=9e-86]} {Smed: dd_Smed_v6_7629_0_1, dd_Smed_v6_7629_0_1, [RH, Score=247, Expect=6e-73]} {RNA1509_22008, RNA1509_31490} {RNA1310_10135.2, RNA1509_22008, RNA1509_31490} {RNA1509_22008, RNA1509_31490, RNA815_7307}

Mlig455_049980 {REF} {Length: 6297} {TRANSSPLICED} {Pfam: Dyggve-Melchior-Clausen syndrome protein [PF09742.11, score=418.0]; High-temperature-induced dauer-formation protein [PF12722.9, score=38.6]} {Human: ENSG00000141627, DYM, dymeclin, [RH, Score=355, Expect=4e-113]} {Mouse: ENSMUSG00000035765, Dym, dymeclin, [RH, Score=374, Expect=1e-120]} {Dmel: FBgn0027607, CG8230, [RH, Score=345, Expect=2e-109]} {Celegans: WBGene00008136, C47D12.2, [RH, Score=283, Expect=1e-85]} {Smed: dd_Smed_v6_7629_0_1, dd_Smed_v6_7629_0_1, [RH, Score=249, Expect=1e-73]} {RNA1509_31490} {RNA1310_10135.1} {RNA815_7307}
9. MligTC455_40954 333 6.93 Mlig455_042529

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_042529 {REF} {Length: 3005} {TRANSSPLICED} {RNA1509_39633} {RNA1310_7757.1} {RNA815_15362}
10. MligTC455_41122 349 7.28 Mlig455_005107, Mlig455_005196

Neo: Int S/G2/M

Age: -

 ANAPC5 0.953 - - 0.953 - - -

Mlig455_005107 {REF} {Length: 3062} {TRANSSPLICED} {Pfam: Anaphase-promoting complex subunit 5 [PF12862.9, score=26.0]} {Human: ENSG00000089053, ANAPC5, anaphase promoting complex subunit 5, [RH, Score=99.8, Expect=6e-21]} {Mouse: ENSMUSG00000029472, Anapc5, anaphase-promoting complex subunit 5, [RH, Score=89.4, Expect=7e-18]} {RNA1509_19224} {RNA1310_7274.1} {RNA815_8056}

Mlig455_005196 {REF} {Length: 2934} {TRANSSPLICED} {Pfam: Anaphase-promoting complex subunit 5 [PF12862.9, score=26.0]} {Human: ENSG00000089053, ANAPC5, anaphase promoting complex subunit 5, [RH, Score=100, Expect=5e-21]} {Mouse: ENSMUSG00000029472, Anapc5, anaphase-promoting complex subunit 5, [RH, Score=90.1, Expect=4e-18]} {RNA1509_19224} {RNA1310_7274.1, RNA1509_19224} {RNA1509_19224, RNA815_8056}
11. MligTC455_27642 279 5.82 Mlig455_006426

Neo: -

Age: -

Region-enriched R4: 1.960/0.00696

 NOTCH1 0.952 - - - - 0.952 - Mlig455_006426 {REF} {Length: 4913} {TRANSSPLICED} {Pfam: EGF-like domain [PF00008.29, score=151.4]; Human growth factor-like EGF [PF12661.9, score=74.2]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=290, Expect=1e-81]} {Mouse: ENSMUSG00000026923, Notch1, notch 1, [Score=295, Expect=3e-83]} {Dmel: FBgn0259685, crb, crumbs, [Score=256, Expect=2e-70]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=214, Expect=8e-57]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=220, Expect=5e-59]} {RNA1509_33949, RNA1509_39530, RNA1509_42581, RNA1509_43325} {RNA1310_10126, RNA1509_39530, RNA1509_42581, RNA1509_43325} {RNA1509_39530, RNA1509_42581, RNA1509_43325, RNA815_693.1}
12. MligTC455_29034 114 2.38 Mlig455_046018, Mlig455_049535

Neo: -

Age: -

 0.952 - - - - 0.952 -

Mlig455_046018 {REF} {Length: 1348} {NoTransDecoderORF} {RNA1509_34915} {RNA1310_8956.1} {RNA815_20736.1}

Mlig455_049535 {REF} {Length: 1831} {NoTransDecoderORF} {RNA1509_51837} {RNA1310_8956.2} {RNA815_41033.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA