TomoSeq data search

Data search

Results for MligTC455_22827

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_22827	3957	82.44	Mlig455_017876	Neo: - Age: Down-Up-Down	ATG4C	Mlig455_017876 {REF} {Length: 5070} {Pfam: Peptidase family C54 [PF03416.21, score=188.3]; Ribosomal protein L6 [PF00347.25, score=41.0]} {Human: ENSG00000125703, ATG4C, autophagy related 4C cysteine peptidase, [Score=142, Expect=2e-36]} {Mouse: ENSMUSG00000028550, Atg4c, autophagy related 4C, cysteine peptidase, [Score=137, Expect=1e-34]; ENSMUSG00000002820, Atg4d, autophagy related 4D, cysteine peptidase, [Score=137, Expect=1e-34]} {Dmel: FBgn0038325, Atg4b, Autophagy-related 4b, [Score=134, Expect=9e-33]} {Celegans: WBGene00013595, atg-4.1, Cysteine protease, [Score=127, Expect=1e-31]} {Smed: dd_Smed_v6_10824_0_1, dd_Smed_v6_10824_0_1, [RH, Score=162, Expect=1e-43]} {RNA1509_29780} {RNA1310_15687.1, RNA1509_29780} {RNA1509_29780, RNA815_37674}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_22827

3957

82.44

Mlig455_017876

Neo: -

Age: Down-Up-Down

ATG4C

Mlig455_017876 {REF} {Length: 5070} {Pfam: Peptidase family C54 [PF03416.21, score=188.3]; Ribosomal protein L6 [PF00347.25, score=41.0]} {Human: ENSG00000125703, ATG4C, autophagy related 4C cysteine peptidase, [Score=142, Expect=2e-36]} {Mouse: ENSMUSG00000028550, Atg4c, autophagy related 4C, cysteine peptidase, [Score=137, Expect=1e-34]; ENSMUSG00000002820, Atg4d, autophagy related 4D, cysteine peptidase, [Score=137, Expect=1e-34]} {Dmel: FBgn0038325, Atg4b, Autophagy-related 4b, [Score=134, Expect=9e-33]} {Celegans: WBGene00013595, atg-4.1, Cysteine protease, [Score=127, Expect=1e-31]} {Smed: dd_Smed_v6_10824_0_1, dd_Smed_v6_10824_0_1, [RH, Score=162, Expect=1e-43]} {RNA1509_29780} {RNA1310_15687.1, RNA1509_29780} {RNA1509_29780, RNA815_37674}

Cumulative graph for MligTC455_22827

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.857	6.403	0.45556	1.00000
RegionR2	-0.448	6.403	0.60979	0.95778
RegionR3	0.361	6.403	0.61612	1.00000
RegionR4	1.483	6.403	0.05957	0.21698
RegionR5	0.879	6.403	0.19748	0.48603
RegionR6	0.74	6.403	0.29354	0.88501
RegionR7	-0.083	6.403	0.91082	1.00000
RegionR8	-2.074	6.403	0.04012	0.39298

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.547	6.403	0.69241	1.00000
RegenerationR2	1.387	6.403	0.12703	0.55067
RegenerationR3	1.405	6.403	0.13144	0.55484
RegenerationR4	1.191	6.403	0.20488	0.65134
RegenerationR5	1.186	6.403	0.19653	0.62876
RegenerationR6	1.216	6.403	0.19297	0.53187
RegenerationBL	2.131	6.403	0.00367	0.05343
RegenerationTP	2.2	6.403	0.01476	0.20831

Genes with expression patterns similar to MligTC455_22827

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_22827	3957	82.44	Mlig455_017876	Neo: - Age: Down-Up-Down	ATG4C	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_017876 {REF} {Length: 5070} {Pfam: Peptidase family C54 [PF03416.21, score=188.3]; Ribosomal protein L6 [PF00347.25, score=41.0]} {Human: ENSG00000125703, ATG4C, autophagy related 4C cysteine peptidase, [Score=142, Expect=2e-36]} {Mouse: ENSMUSG00000028550, Atg4c, autophagy related 4C, cysteine peptidase, [Score=137, Expect=1e-34]; ENSMUSG00000002820, Atg4d, autophagy related 4D, cysteine peptidase, [Score=137, Expect=1e-34]} {Dmel: FBgn0038325, Atg4b, Autophagy-related 4b, [Score=134, Expect=9e-33]} {Celegans: WBGene00013595, atg-4.1, Cysteine protease, [Score=127, Expect=1e-31]} {Smed: dd_Smed_v6_10824_0_1, dd_Smed_v6_10824_0_1, [RH, Score=162, Expect=1e-43]} {RNA1509_29780} {RNA1310_15687.1, RNA1509_29780} {RNA1509_29780, RNA815_37674}
2.	MligTC455_39757	3640	75.83	Mlig455_012247, Mlig455_012260, Mlig455_023282	Neo: - Age: Down-Up-Up Region-enriched R5: 1.235/0.00000	RAB6A, RAB6B	1.695	-	-	-	-	0.951	0.744	Mlig455_012247 {REF} {Length: 1317} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=195.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=122.5]; ADP-ribosylation factor family [PF00025.23, score=50.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=26.7]; 50S ribosome-binding GTPase [PF01926.25, score=24.7]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.0]; RsgA GTPase [PF03193.18, score=21.9]; Ferrous iron transport protein B [PF02421.20, score=21.7]} {Human: ENSG00000175582, RAB6A, RAB6A, member RAS oncogene family, [Score=323, Expect=3e-113]; ENSG00000154917, RAB6B, RAB6B, member RAS oncogene family, [Score=322, Expect=9e-113]} {Mouse: ENSMUSG00000030704, Rab6a, RAB6A, member RAS oncogene family, [Score=323, Expect=2e-113]; ENSMUSG00000032549, Rab6b, RAB6B, member RAS oncogene family, [Score=322, Expect=6e-113]} {Dmel: FBgn0015797, Rab6, [Score=327, Expect=4e-115]} {Celegans: WBGene00004269, rab-6.1, Ras-related protein Rab-6.1, [RH, Score=311, Expect=4e-109]} {Smed: dd_Smed_v6_4465_0_1, dd_Smed_v6_4465_0_1, [Score=329, Expect=2e-116]} {RNA1509_20446} {RNA1310_4872.1} {RNA815_3219.2} Mlig455_012260 {REF} {Length: 1515} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=183.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=108.5]; ADP-ribosylation factor family [PF00025.23, score=40.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=22.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=20.1]} {Human: ENSG00000154917, RAB6B, RAB6B, member RAS oncogene family, [RH, Score=291, Expect=5e-101]} {Mouse: ENSMUSG00000030704, Rab6a, RAB6A, member RAS oncogene family, [Score=291, Expect=5e-101]; ENSMUSG00000032549, Rab6b, RAB6B, member RAS oncogene family, [Score=290, Expect=2e-100]} {Dmel: FBgn0015797, Rab6, [Score=295, Expect=1e-102]} {Celegans: WBGene00004269, rab-6.1, Ras-related protein Rab-6.1, [Score=283, Expect=2e-98]} {Smed: dd_Smed_v6_4465_0_1, dd_Smed_v6_4465_0_1, [Score=301, Expect=2e-105]} {RNA1509_20446} {RNA1310_4872.1} {RNA815_3219.2} Mlig455_023282 {REF} {Length: 560} {NoTransDecoderORF}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_22827

3957

82.44

Mlig455_017876

Neo: -

Age: Down-Up-Down

ATG4C

1.000

MligTC455_39757

3640

75.83

Mlig455_012247, Mlig455_012260, Mlig455_023282

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.235/0.00000

RAB6A, RAB6B

1.695

0.951

0.744

Mlig455_012247 {REF} {Length: 1317} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=195.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=122.5]; ADP-ribosylation factor family [PF00025.23, score=50.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=26.7]; 50S ribosome-binding GTPase [PF01926.25, score=24.7]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.0]; RsgA GTPase [PF03193.18, score=21.9]; Ferrous iron transport protein B [PF02421.20, score=21.7]} {Human: ENSG00000175582, RAB6A, RAB6A, member RAS oncogene family, [Score=323, Expect=3e-113]; ENSG00000154917, RAB6B, RAB6B, member RAS oncogene family, [Score=322, Expect=9e-113]} {Mouse: ENSMUSG00000030704, Rab6a, RAB6A, member RAS oncogene family, [Score=323, Expect=2e-113]; ENSMUSG00000032549, Rab6b, RAB6B, member RAS oncogene family, [Score=322, Expect=6e-113]} {Dmel: FBgn0015797, Rab6, [Score=327, Expect=4e-115]} {Celegans: WBGene00004269, rab-6.1, Ras-related protein Rab-6.1, [RH, Score=311, Expect=4e-109]} {Smed: dd_Smed_v6_4465_0_1, dd_Smed_v6_4465_0_1, [Score=329, Expect=2e-116]} {RNA1509_20446} {RNA1310_4872.1} {RNA815_3219.2}

Mlig455_012260 {REF} {Length: 1515} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=183.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=108.5]; ADP-ribosylation factor family [PF00025.23, score=40.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=22.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=20.1]} {Human: ENSG00000154917, RAB6B, RAB6B, member RAS oncogene family, [RH, Score=291, Expect=5e-101]} {Mouse: ENSMUSG00000030704, Rab6a, RAB6A, member RAS oncogene family, [Score=291, Expect=5e-101]; ENSMUSG00000032549, Rab6b, RAB6B, member RAS oncogene family, [Score=290, Expect=2e-100]} {Dmel: FBgn0015797, Rab6, [Score=295, Expect=1e-102]} {Celegans: WBGene00004269, rab-6.1, Ras-related protein Rab-6.1, [Score=283, Expect=2e-98]} {Smed: dd_Smed_v6_4465_0_1, dd_Smed_v6_4465_0_1, [Score=301, Expect=2e-105]} {RNA1509_20446} {RNA1310_4872.1} {RNA815_3219.2}

Mlig455_023282 {REF} {Length: 560} {NoTransDecoderORF}