M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22966

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22966 1059 22.06 Mlig455_055661

Neo: -

Age: -

Region-enriched R2: 1.424/0.00885

 Mlig455_055661 {REF} {Length: 1342} {Pfam: Sleepless protein [PF17064.7, score=26.9]} {Smed: dd_Smed_v6_3898_0_1, dd_Smed_v6_3898_0_1, [RH, Score=69.3, Expect=1e-15]} {RNA1509_19244, RNA1509_27313} {RNA1310_27569.1, RNA1509_19244, RNA1509_27313} {RNA1509_19244, RNA1509_27313, RNA815_11340}

Cumulative graph for MligTC455_22966

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.026 4.644 0.09477 0.65724
RegionR2 1.424 4.644 0.00029 0.00885
RegionR3 0.242 4.644 0.50370 0.99589
RegionR4 -0.459 4.644 0.33446 0.65303
RegionR5 -0.947 4.644 0.02672 0.11919
RegionR6 0.356 4.644 0.33520 0.92278
RegionR7 0.732 4.644 0.07642 0.53359
RegionR8 0.677 4.644 0.17711 0.75769

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.9 4.644 0.60296 1.00000
RegenerationR2 -1.174 4.644 0.00075 0.03912
RegenerationR3 -0.57 4.644 0.14939 0.57837
RegenerationR4 0.058 4.644 0.89143 1.00000
RegenerationR5 0.435 4.644 0.28163 0.71021
RegenerationR6 -0.32 4.644 0.42236 0.75272
RegenerationBL 0.227 4.644 0.56215 0.91692
RegenerationTP -0.337 4.644 0.45237 0.86896


Genes with expression patterns similar to MligTC455_22966

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22966 1059 22.06 Mlig455_055661

Neo: -

Age: -

Region-enriched R2: 1.424/0.00885

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_055661 {REF} {Length: 1342} {Pfam: Sleepless protein [PF17064.7, score=26.9]} {Smed: dd_Smed_v6_3898_0_1, dd_Smed_v6_3898_0_1, [RH, Score=69.3, Expect=1e-15]} {RNA1509_19244, RNA1509_27313} {RNA1310_27569.1, RNA1509_19244, RNA1509_27313} {RNA1509_19244, RNA1509_27313, RNA815_11340}
2. MligTC455_52722 1007 20.97 Mlig455_019980, Mlig455_038108

Neo: -

Age: -

 CELF3 2.479 0.745 0.780 - 0.954 - -

Mlig455_019980 {REF} {Length: 4713} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=125.3]} {Human: ENSG00000159409, CELF3, CUGBP Elav-like family member 3, [Score=317, Expect=6e-103]; ENSG00000161082, CELF5, CUGBP Elav-like family member 5, [Score=315, Expect=8e-102]} {Mouse: ENSMUSG00000028137, Celf3, CUGBP, Elav-like family member 3, [Score=319, Expect=2e-103]; ENSMUSG00000024268, Celf4, CUGBP, Elav-like family member 4, [Score=312, Expect=1e-100]} {Dmel: FBgn0000114, bru1, bruno 1, [Score=243, Expect=2e-73]} {Celegans: WBGene00006807, unc-75, Putative RNA-binding protein, [RH, Score=172, Expect=3e-48]} {Smed: dd_Smed_v6_11349_0_1, dd_Smed_v6_11349_0_1, [RH, Score=366, Expect=1e-122]} {RNA1509_17477} {RNA1310_8180} {RNA815_3761.1}

Mlig455_038108 {REF} {Length: 3254} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=125.3]} {Human: ENSG00000159409, CELF3, CUGBP Elav-like family member 3, [Score=317, Expect=6e-103]; ENSG00000161082, CELF5, CUGBP Elav-like family member 5, [Score=315, Expect=8e-102]} {Mouse: ENSMUSG00000028137, Celf3, CUGBP, Elav-like family member 3, [Score=319, Expect=2e-103]; ENSMUSG00000024268, Celf4, CUGBP, Elav-like family member 4, [Score=312, Expect=1e-100]} {Dmel: FBgn0000114, bru1, bruno 1, [Score=243, Expect=2e-73]} {Celegans: WBGene00006807, unc-75, Putative RNA-binding protein, [RH, Score=172, Expect=3e-48]} {Smed: dd_Smed_v6_11349_0_1, dd_Smed_v6_11349_0_1, [RH, Score=366, Expect=1e-122]} {RNA1509_17477} {RNA1310_2810} {RNA815_3761.1}
3. MligTC455_16850 599 12.47 Mlig455_016669

Neo: -

Age: -

 F8 0.98 - - - 0.980 - - Mlig455_016669 {REF} {Length: 2989} {TRANSSPLICED} {Pfam: F5/8 type C domain [PF00754.27, score=191.6]} {Human: ENSG00000185010, F8, coagulation factor VIII, [RH, Score=162, Expect=2e-41]} {Mouse: ENSMUSG00000030605, Mfge8, milk fat globule-EGF factor 8 protein, [Score=169, Expect=4e-46]; ENSMUSG00000034488, Edil3, EGF-like repeats and discoidin I-like domains 3, [Score=161, Expect=7e-43]} {Dmel: FBgn0053531, Ddr, Discoidin domain receptor, [Score=81.3, Expect=3e-16]} {Celegans: WBGene00016104, ddr-1, Discoidin domain-containing receptor A, [Score=78.2, Expect=7e-15]} {Smed: dd_Smed_v6_5463_0_1, dd_Smed_v6_5463_0_1, [RH, Score=463, Expect=8e-158]} {RNA1509_17449, RNA1509_43060} {RNA1310_14217, RNA1509_43060} {RNA1509_43060, RNA815_1790.1}
4. MligTC455_36248 293 6.1 Mlig455_047225

Neo: -

Age: -

 CEP170 0.958 - - - 0.958 - - Mlig455_047225 {REF} {Length: 7154} {TRANSSPLICED} {Pfam: FHA domain [PF00498.28, score=63.8]; Inner membrane component of T3SS, cytoplasmic domain [PF16697.7, score=33.4]} {Human: ENSG00000276725, CEP170, centrosomal protein 170, [Score=96.7, Expect=3e-19]; ENSG00000143702, CEP170, centrosomal protein 170, [Score=96.7, Expect=3e-19]} {Mouse: ENSMUSG00000057335, Cep170, centrosomal protein 170, [Score=100, Expect=1e-20]} {Smed: dd_Smed_v6_9728_0_2, dd_Smed_v6_9728_0_2, [RH, Score=92.0, Expect=1e-18]} {RNA1509_35531, RNA1509_47933} {RNA1310_31312, RNA1509_47933} {RNA1509_47933, RNA815_29466}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA