M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23279

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23279 811 16.89 Mlig455_012361

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.399

 DDX21 Mlig455_012361 {REF} {Length: 4573} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=149.4]; GUCT (NUC152) domain [PF08152.14, score=65.2]; Helicase conserved C-terminal domain [PF00271.33, score=58.0]; Type III restriction enzyme, res subunit [PF04851.17, score=26.5]; U3-containing 90S pre-ribosomal complex subunit [PF14617.8, score=20.1]; AAA domain [PF13604.8, score=18.6]} {Human: ENSG00000165732, DDX21, DExD-box helicase 21, [Score=395, Expect=2e-127]} {Mouse: ENSMUSG00000020075, Ddx21, DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, [Score=404, Expect=2e-129]} {Dmel: FBgn0035720, CG10077, [Score=167, Expect=3e-43]} {Celegans: WBGene00001600, glh-3, ATP-dependent RNA helicase glh-3, [Score=165, Expect=6e-43]} {Smed: dd_Smed_v6_283_0_1, dd_Smed_v6_283_0_1, [Score=496, Expect=2e-168]} {RNA1509_7008} {RNA1310_3102} {RNA815_3561}

Cumulative graph for MligTC455_23279

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.091 4.368 0.93087 1.00000
RegionR2 0.5 4.368 0.29334 0.68189
RegionR3 0.488 4.368 0.20768 0.74828
RegionR4 -0.211 4.368 0.64832 0.95144
RegionR5 -0.318 4.368 0.40529 0.76352
RegionR6 -0.565 4.368 0.20344 0.77718
RegionR7 -0.317 4.368 0.58727 1.00000
RegionR8 0.33 4.368 0.62845 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.582 4.368 0.18659 0.92717
RegenerationR2 0.728 4.368 0.06016 0.40286
RegenerationR3 0.526 4.368 0.21894 0.65532
RegenerationR4 0.902 4.368 0.04678 0.34931
RegenerationR5 0.733 4.368 0.07966 0.43876
RegenerationR6 1.524 4.368 0.00110 0.03632
RegenerationBL 0.738 4.368 0.14633 0.45676
RegenerationTP -0.031 4.368 0.96011 1.00000


Genes with expression patterns similar to MligTC455_23279

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23279 811 16.89 Mlig455_012361

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.399

 DDX21 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_012361 {REF} {Length: 4573} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=149.4]; GUCT (NUC152) domain [PF08152.14, score=65.2]; Helicase conserved C-terminal domain [PF00271.33, score=58.0]; Type III restriction enzyme, res subunit [PF04851.17, score=26.5]; U3-containing 90S pre-ribosomal complex subunit [PF14617.8, score=20.1]; AAA domain [PF13604.8, score=18.6]} {Human: ENSG00000165732, DDX21, DExD-box helicase 21, [Score=395, Expect=2e-127]} {Mouse: ENSMUSG00000020075, Ddx21, DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, [Score=404, Expect=2e-129]} {Dmel: FBgn0035720, CG10077, [Score=167, Expect=3e-43]} {Celegans: WBGene00001600, glh-3, ATP-dependent RNA helicase glh-3, [Score=165, Expect=6e-43]} {Smed: dd_Smed_v6_283_0_1, dd_Smed_v6_283_0_1, [Score=496, Expect=2e-168]} {RNA1509_7008} {RNA1310_3102} {RNA815_3561}
2. MligTC455_47536 707 14.74 Mlig455_030587

Neo: -

Age: -

 LRRD1 2.441 - 0.754 - 0.733 0.954 - Mlig455_030587 {REF} {Length: 3720} {Pfam: Leucine rich repeat [PF13855.8, score=106.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=81.9]; Leucine Rich Repeat [PF00560.35, score=36.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=22.0]; Ras family [PF00071.24, score=19.5]; Leucine Rich repeat [PF13516.8, score=19.2]} {Human: ENSG00000240720, LRRD1, leucine rich repeats and death domain containing 1, [Score=132, Expect=8e-31]} {Mouse: ENSMUSG00000070056, Mfhas1, malignant fibrous histiocytoma amplified sequence 1, [RH, Score=125, Expect=7e-29]} {Dmel: FBgn0038504, Sur-8, [Score=135, Expect=3e-32]} {Celegans: WBGene00002632, let-413, [Score=114, Expect=8e-26]} {Smed: dd_Smed_v6_11334_0_1, dd_Smed_v6_11334_0_1, [RH, Score=378, Expect=2e-115]} {RNA1509_10696, RNA1509_26722} {RNA1310_4666.1, RNA1509_10696, RNA1509_26722} {RNA1509_10696, RNA1509_26722, RNA815_3011}
3. MligTC455_15717 814 16.95 Mlig455_062994

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=2.705

 1.688 - - 0.954 - - 0.734 Mlig455_062994 {REF} {Length: 1156} {RNA1509_42902} {RNA1310_29904.1} {RNA815_6469.1}
4. MligTC455_53842 1222 25.46 Mlig455_023890

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.345

Region-enriched R2: 1.546/0.01667

 1.669 - - - 0.709 0.960 - Mlig455_023890 {REF} {Length: 1336} {RNA1509_15580} {RNA1310_22487.1} {RNA815_10676.1}
5. MligTC455_31314 2211 46.05 Mlig455_048798

Neo: -

Age: -

 ARGLU1 1.653 - - - 0.703 0.950 - Mlig455_048798 {REF} {Length: 2767} {Pfam: Arginine and glutamate-rich 1 [PF15346.8, score=111.7]} {Human: ENSG00000134884, ARGLU1, arginine and glutamate rich 1, [RH, Score=79.7, Expect=1e-16]} {Mouse: ENSMUSG00000040459, Arglu1, arginine and glutamate rich 1, [RH, Score=79.7, Expect=6e-17]} {Dmel: FBgn0051712, CG31712, [RH, Score=81.6, Expect=1e-17]} {Smed: dd_Smed_v6_6381_0_1, dd_Smed_v6_6381_0_1, [RH, Score=64.3, Expect=4e-12]} {RNA1509_30130, RNA1509_38940} {RNA1310_34850, RNA1509_30130, RNA1509_38940} {RNA1509_30130, RNA1509_38940, RNA815_5433.1}
6. MligTC455_44975 612 12.76 Mlig455_029692, Mlig455_034837

Neo: -

Age: -

 0.971 - - - - 0.971 -

Mlig455_029692 {REF} {Length: 2167} {TRANSSPLICED} {RNA1509_49332} {RNA1310_7362.1, RNA1509_49332} {RNA1509_49332, RNA815_14078}

Mlig455_034837 {REF} {Length: 2191} {TRANSSPLICED} {RNA1509_49332} {RNA1310_7362.1} {RNA815_14078}
7. MligTC455_44640 1401 29.18 Mlig455_035983

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.952

 0.965 - - - - 0.965 - Mlig455_035983 {REF} {Length: 2336} {Pfam: Hsp20/alpha crystallin family [PF00011.23, score=80.8]} {RNA1509_39912, RNA1509_43112} {RNA1310_34469, RNA1509_39912, RNA1509_43112} {RNA1509_39912, RNA1509_43112, RNA815_15853}
8. MligTC455_28198 639 13.31 Mlig455_030935, Mlig455_032617

Neo: -

Age: Down-Up-Down

 0.962 - - - - 0.962 -

Mlig455_030935 {REF} {Length: 6761} {Pfam: African swine fever virus J13L protein [PF05568.13, score=44.9]} {RNA1509_19556} {RNA1310_9365} {RNA815_12631}

Mlig455_032617 {REF} {Length: 6082} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=31.2]} {Mouse: ENSMUSG00000070331, Qrich2, glutamine rich 2, [Score=96.3, Expect=1e-19]} {RNA1509_12078, RNA1509_19556} {RNA1310_9365, RNA1509_12078} {RNA1509_12078, RNA815_12631}
9. MligTC455_35046 485 10.1 Mlig455_067666

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.340

Region-enriched R8: 2.605/0.02555
Region-enriched R2: 2.499/0.01493

 PDE2A 0.956 - - - - 0.956 - Mlig455_067666 {REF} {Length: 5187} {Pfam: 3'5'-cyclic nucleotide phosphodiesterase [PF00233.21, score=237.1]; GAF domain [PF01590.28, score=63.4]; GAF domain [PF13492.8, score=25.2]} {Human: ENSG00000186642, PDE2A, phosphodiesterase 2A, [RH, Score=718, Expect=0.0]} {Mouse: ENSMUSG00000030653, Gm45837, predicted gene 45837, [RH, Score=713, Expect=0.0]; ENSMUSG00000110195, Pde2a, phosphodiesterase 2A, cGMP-stimulated, [RH, Score=713, Expect=0.0]} {Dmel: FBgn0085370, Pde11, Phosphodiesterase 11, [Score=325, Expect=2e-95]} {Celegans: WBGene00011146, pde-2, Probable 3',5'-cyclic phosphodiesterase pde-2, [RH, Score=334, Expect=7e-101]} {Smed: dd_Smed_v6_8589_0_2, dd_Smed_v6_8589_0_2, [RH, Score=817, Expect=0.0]} {RNA1509_5437} {RNA1310_2713.4} {RNA815_1901.1}
10. MligTC455_50148 595 12.39 Mlig455_006502, Mlig455_006621

Neo: -

Age: -

Region-enriched R4: 1.783/0.00382

 ZBBX 0.955 - - - - 0.955 -

Mlig455_006502 {REF} {Length: 3171} {TRANSSPLICED} {Pfam: Cytoplasmic polyadenylation element-binding protein ZZ domain [PF16366.7, score=18.8]} {Human: ENSG00000169064, ZBBX, zinc finger B-box domain containing, [RH, Score=78.6, Expect=3e-14]} {Mouse: ENSMUSG00000034151, Zbbx, zinc finger, B-box domain containing, [RH, Score=89.4, Expect=6e-18]} {Smed: dd_Smed_v6_11048_0_1, dd_Smed_v6_11048_0_1, [RH, Score=139, Expect=3e-34]} {RNA1509_10989, RNA1509_54948} {RNA1310_3743, RNA1509_10989, RNA1509_54948} {RNA1509_10989, RNA1509_54948, RNA815_5872}

Mlig455_006621 {REF} {Length: 3128} {TRANSSPLICED} {Human: ENSG00000169064, ZBBX, zinc finger B-box domain containing, [RH, Score=80.1, Expect=9e-15]} {Mouse: ENSMUSG00000034151, Zbbx, zinc finger, B-box domain containing, [RH, Score=89.0, Expect=9e-18]} {Smed: dd_Smed_v6_11048_0_1, dd_Smed_v6_11048_0_1, [RH, Score=139, Expect=3e-34]} {RNA1509_10989} {RNA1310_3743} {RNA815_5872}
11. MligTC455_48998 844 17.59 Mlig455_042574

Neo: -

Age: -

 GRIK2 0.952 - - - - 0.952 - Mlig455_042574 {REF} {Length: 4545} {Pfam: Ligand-gated ion channel [PF00060.28, score=98.9]; Receptor family ligand binding region [PF01094.30, score=46.6]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=43.9]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=39.5]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=128, Expect=3e-29]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=126, Expect=1e-28]} {Mouse: ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=125, Expect=1e-28]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=125, Expect=2e-28]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=122, Expect=2e-27]} {Dmel: FBgn0039927, CG11155, [Score=142, Expect=8e-34]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=129, Expect=6e-30]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=223, Expect=3e-64]} {RNA1509_10680} {RNA1310_13007.1} {RNA815_11044}
12. MligTC455_19120 1176 24.51 Mlig455_003816

Neo: -

Age: -

Region-enriched R4: 1.528/0.00158

 GOLGA7 0.95 - - - - - 0.950 Mlig455_003816 {REF} {Length: 1040} {TRANSSPLICED} {Pfam: Golgin subfamily A member 7/ERF4 family [PF10256.11, score=93.5]} {Human: ENSG00000147533, GOLGA7, golgin A7, [RH, Score=120, Expect=8e-35]} {Mouse: ENSMUSG00000015341, Golga7, golgi autoantigen, golgin subfamily a, 7, [RH, Score=119, Expect=6e-35]} {Dmel: FBgn0039427, CG5447, [Score=121, Expect=2e-35]} {Celegans: WBGene00013323, Y57G11C.33, [Score=83.6, Expect=1e-20]} {Smed: dd_Smed_v6_5627_0_2, dd_Smed_v6_5627_0_2, [Score=103, Expect=6e-29]} {RNA1509_10331} {RNA1310_30594} {RNA815_15047}
13. MligTC455_25936 273 5.68 Mlig455_037036

Neo: -

Age: Up-Down-Down

 KIAA1841 0.95 - - - - 0.950 - Mlig455_037036 {REF} {Length: 2749} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF3342) [PF11822.10, score=118.5]} {Human: ENSG00000162929, KIAA1841, KIAA1841, [Score=322, Expect=6e-99]} {Mouse: ENSMUSG00000042208, 0610010F05Rik, RIKEN cDNA 0610010F05 gene, [Score=380, Expect=5e-121]} {Dmel: FBgn0036031, CG6761, [Score=203, Expect=1e-54]} {Smed: dd_Smed_v6_11436_0_1, dd_Smed_v6_11436_0_1, [Score=335, Expect=1e-104]} {RNA1509_18348} {RNA1310_9169} {RNA815_752.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA