M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23318

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23318 9604 200.09 Mlig455_030512

Neo: -

Age: logFC(26M/2M)=0.506

Regeneration-downregulated BL: -1.067

Regeneration-depleted BL: -1.067

 IFI30 Mlig455_030512 {REF} {Length: 1806} {Pfam: Gamma interferon inducible lysosomal thiol reductase (GILT) [PF03227.18, score=106.5]; Saposin A-type domain [PF02199.17, score=21.0]} {Human: ENSG00000216490, IFI30, IFI30, lysosomal thiol reductase, [RH, Score=142, Expect=1e-40]} {Mouse: ENSMUSG00000110777, Ifi30, interferon gamma inducible protein 30, [Score=114, Expect=4e-30]} {Dmel: FBgn0038149, GILT1, Gamma-interferon-inducible lysosomal thiol reductase 1, [RH, Score=103, Expect=2e-26]} {Celegans: WBGene00009514, F37H8.5, GILT-like protein F37H8.5, [RH, Score=110, Expect=1e-28]} {Smed: dd_Smed_v6_2024_0_1, dd_Smed_v6_2024_0_1, [RH, Score=129, Expect=1e-36]} {RNA1509_11383, RNA1509_12234, RNA1509_2257, RNA1509_36780, RNA1509_8932} {RNA1310_6680.2, RNA1509_11383, RNA1509_12234, RNA1509_2257, RNA1509_36780, RNA1509_8932} {RNA1509_11383, RNA1509_12234, RNA1509_2257, RNA1509_36780, RNA1509_8932, RNA815_10821.1}

Cumulative graph for MligTC455_23318

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.862 7.76 0.00023 0.05115
RegionR2 -0.536 7.76 0.06223 0.30072
RegionR3 -0.096 7.76 0.69461 1.00000
RegionR4 0.508 7.76 0.06636 0.23346
RegionR5 0.891 7.76 0.00009 0.00147
RegionR6 0.442 7.76 0.06353 0.47232
RegionR7 0.49 7.76 0.05138 0.43623
RegionR8 0.164 7.76 0.58327 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.707 7.76 0.26043 0.96822
RegenerationR2 -0.304 7.76 0.30107 0.74272
RegenerationR3 0.458 7.76 0.12377 0.54411
RegenerationR4 0.604 7.76 0.04624 0.34737
RegenerationR5 0.374 7.76 0.20035 0.63314
RegenerationR6 0.32 7.76 0.28501 0.63515
RegenerationBL -1.067 7.76 0.00024 0.00842 Specific for BL: -1.067
RegenerationTP 0.272 7.76 0.34346 0.78640


Genes with expression patterns similar to MligTC455_23318

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23318 9604 200.09 Mlig455_030512

Neo: -

Age: logFC(26M/2M)=0.506

Regeneration-downregulated BL: -1.067

Regeneration-depleted BL: -1.067

 IFI30 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_030512 {REF} {Length: 1806} {Pfam: Gamma interferon inducible lysosomal thiol reductase (GILT) [PF03227.18, score=106.5]; Saposin A-type domain [PF02199.17, score=21.0]} {Human: ENSG00000216490, IFI30, IFI30, lysosomal thiol reductase, [RH, Score=142, Expect=1e-40]} {Mouse: ENSMUSG00000110777, Ifi30, interferon gamma inducible protein 30, [Score=114, Expect=4e-30]} {Dmel: FBgn0038149, GILT1, Gamma-interferon-inducible lysosomal thiol reductase 1, [RH, Score=103, Expect=2e-26]} {Celegans: WBGene00009514, F37H8.5, GILT-like protein F37H8.5, [RH, Score=110, Expect=1e-28]} {Smed: dd_Smed_v6_2024_0_1, dd_Smed_v6_2024_0_1, [RH, Score=129, Expect=1e-36]} {RNA1509_11383, RNA1509_12234, RNA1509_2257, RNA1509_36780, RNA1509_8932} {RNA1310_6680.2, RNA1509_11383, RNA1509_12234, RNA1509_2257, RNA1509_36780, RNA1509_8932} {RNA1509_11383, RNA1509_12234, RNA1509_2257, RNA1509_36780, RNA1509_8932, RNA815_10821.1}
2. MligTC455_23317 6386 133.04 Mlig455_030502

Neo: -

Age: logFC(26M/2M)=0.152

 IFI30 3.597 - - 0.853 0.983 0.888 0.873 Mlig455_030502 {REF} {Length: 1804} {Pfam: Gamma interferon inducible lysosomal thiol reductase (GILT) [PF03227.18, score=106.5]; Saposin A-type domain [PF02199.17, score=21.0]} {Human: ENSG00000216490, IFI30, IFI30, lysosomal thiol reductase, [RH, Score=142, Expect=1e-40]} {Mouse: ENSMUSG00000110777, Ifi30, interferon gamma inducible protein 30, [Score=114, Expect=4e-30]} {Dmel: FBgn0038149, GILT1, Gamma-interferon-inducible lysosomal thiol reductase 1, [RH, Score=103, Expect=2e-26]} {Celegans: WBGene00009514, F37H8.5, GILT-like protein F37H8.5, [RH, Score=110, Expect=1e-28]} {Smed: dd_Smed_v6_2024_0_1, dd_Smed_v6_2024_0_1, [RH, Score=129, Expect=1e-36]} {RNA1509_1665, RNA1509_42982, RNA1509_8932} {RNA1310_6680.2, RNA1509_1665, RNA1509_42982} {RNA1509_1665, RNA1509_42982, RNA815_10821.1}
3. MligTC455_42571 3251 67.72 Mlig455_035168

Neo: -

Age: logFC(26M/2M)=-0.472

Region-enriched R4: 1.085/0.02080
Region-enriched R5: 1.005/0.00868

 RIDA 1.806 - - - 0.953 - 0.853 Mlig455_035168 {REF} {Length: 747} {TRANSSPLICED} {Pfam: Endoribonuclease L-PSP [PF01042.23, score=139.7]} {Human: ENSG00000132541, RIDA, reactive intermediate imine deaminase A homolog, [RH, Score=149, Expect=4e-47]} {Mouse: ENSMUSG00000022323, Rida, reactive intermediate imine deaminase A homolog, [RH, Score=151, Expect=5e-48]} {Dmel: FBgn0086691, UK114, [RH, Score=127, Expect=2e-38]} {Celegans: WBGene00016011, C23G10.2, RutC family protein C23G10.2, [RH, Score=143, Expect=2e-44]} {Smed: dd_Smed_v6_1895_0_1, dd_Smed_v6_1895_0_1, [RH, Score=154, Expect=3e-49]} {RNA1509_10509, RNA1509_25270, RNA1509_5491} {RNA1310_43287, RNA1509_10509, RNA1509_25270, RNA1509_5491} {RNA1509_10509, RNA1509_25270, RNA1509_5491, RNA815_23194}
4. MligTC455_44637 1009 21.02 Mlig455_037968

Neo: -

Age: Down-Up-Up

Region-enriched R4: 2.321/0.00180
Region-enriched R5: 1.975/0.00257

 ATP6V1H 1.738 - - - 0.959 - 0.779 Mlig455_037968 {REF} {Length: 2272} {Pfam: V-ATPase subunit H [PF03224.16, score=319.3]; V-ATPase subunit H [PF11698.10, score=150.9]; Armadillo-like [PF04826.15, score=23.7]; HEAT repeats [PF13646.8, score=21.0]; Armadillo/beta-catenin-like repeat [PF00514.25, score=19.9]; HEAT repeat [PF02985.24, score=19.7]} {Human: ENSG00000047249, ATP6V1H, ATPase H+ transporting V1 subunit H, [RH, Score=528, Expect=0.0]} {Mouse: ENSMUSG00000033793, Atp6v1h, ATPase, H+ transporting, lysosomal V1 subunit H, [RH, Score=528, Expect=0.0]} {Dmel: FBgn0027779, VhaSFD, Vacuolar H[+]-ATPase SFD subunit, [RH, Score=558, Expect=0.0]} {Celegans: WBGene00020507, vha-15, Probable V-type proton ATPase subunit H 2, [RH, Score=506, Expect=3e-177]} {Smed: dd_Smed_v6_1452_0_1, dd_Smed_v6_1452_0_1, [RH, Score=507, Expect=1e-177]} {RNA1509_10879, RNA1509_8310} {RNA1310_11192, RNA1509_10879, RNA1509_8310} {RNA1509_10879, RNA1509_8310, RNA815_3831.1}
5. MligTC455_16160 1063 22.15 Mlig455_011526, Mlig455_011602

Neo: -

Age: -

 PHACTR2 1.679 - - - 0.957 - 0.722

Mlig455_011526 {REF} {Length: 3354} {TRANSSPLICED} {Pfam: RPEL repeat [PF02755.17, score=58.7]} {Human: ENSG00000112419, PHACTR2, phosphatase and actin regulator 2, [RH, Score=173, Expect=8e-47]; ENSG00000112137, PHACTR1, phosphatase and actin regulator 1, [RH, Score=167, Expect=1e-44]; ENSG00000282833, PHACTR1, phosphatase and actin regulator 1, [RH, Score=167, Expect=1e-44]} {Mouse: ENSMUSG00000054728, Phactr1, phosphatase and actin regulator 1, [RH, Score=168, Expect=3e-45]} {Dmel: FBgn0052264, CG32264, [Score=159, Expect=1e-42]} {Celegans: WBGene00009174, F26H9.2, [Score=147, Expect=2e-38]} {Smed: dd_Smed_v6_5826_0_1, dd_Smed_v6_5826_0_1, [Score=187, Expect=4e-52]} {RNA1509_57552} {RNA1310_10718} {RNA815_3109.1}

Mlig455_011602 {REF} {Length: 8215} {TRANSSPLICED} {Pfam: RPEL repeat [PF02755.17, score=58.5]} {Human: ENSG00000112419, PHACTR2, phosphatase and actin regulator 2, [RH, Score=175, Expect=8e-47]; ENSG00000112137, PHACTR1, phosphatase and actin regulator 1, [RH, Score=168, Expect=9e-45]; ENSG00000282833, PHACTR1, phosphatase and actin regulator 1, [RH, Score=168, Expect=9e-45]} {Mouse: ENSMUSG00000062866, Phactr2, phosphatase and actin regulator 2, [RH, Score=177, Expect=4e-48]; ENSMUSG00000054728, Phactr1, phosphatase and actin regulator 1, [RH, Score=169, Expect=3e-45]} {Dmel: FBgn0052264, CG32264, [Score=159, Expect=1e-42]} {Celegans: WBGene00009174, F26H9.2, [Score=148, Expect=2e-38]} {Smed: dd_Smed_v6_5826_0_1, dd_Smed_v6_5826_0_1, [Score=187, Expect=4e-52]} {RNA1509_9771} {RNA1310_10718} {RNA815_3109.1}
6. MligTC455_23906 1404 29.24 Mlig455_050554

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.252

 SOD1 1.662 - - - 0.959 - 0.703 Mlig455_050554 {REF} {Length: 1367} {TRANSSPLICED} {Pfam: Copper/zinc superoxide dismutase (SODC) [PF00080.22, score=126.7]} {Human: ENSG00000142168, SOD1, superoxide dismutase 1, [Score=134, Expect=5e-40]} {Mouse: ENSMUSG00000022982, Sod1, superoxide dismutase 1, soluble, [Score=146, Expect=6e-45]} {Dmel: FBgn0003462, Sod1, Superoxide dismutase 1, [Score=143, Expect=7e-44]} {Celegans: WBGene00004933, sod-4, Extracellular superoxide dismutase [Cu-Zn], [Score=148, Expect=1e-45]} {Smed: dd_Smed_v6_519_0_1, dd_Smed_v6_519_0_1, [Score=146, Expect=8e-45]} {RNA1509_19383, RNA1509_29788, RNA1509_51937, RNA1509_7669} {RNA1310_19860, RNA1509_19383, RNA1509_29788, RNA1509_51937, RNA1509_7669} {RNA1509_19383, RNA1509_29788, RNA1509_51937, RNA1509_7669, RNA815_9296.1}
7. MligTC455_43617 3125 65.11 Mlig455_006858, Mlig455_031605

Neo: Neoblast, stringent

Age: Down-Up-Up, logFC(26M/2M)=0.295

Region-enriched R5: 1.653/0.00000

 NUFIP1 0.957 - - - 0.957 - -

Mlig455_006858 {REF} {Length: 1733} {TRANSSPLICED} {Pfam: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) [PF10453.11, score=30.9]} {Human: ENSG00000083635, NUFIP1, NUFIP1, FMR1 interacting protein 1, [RH, Score=110, Expect=3e-25]} {Mouse: ENSMUSG00000022009, Nufip1, nuclear fragile X mental retardation protein interacting protein 1, [RH, Score=125, Expect=6e-31]} {Dmel: FBgn0036812, Nufip, [Score=58.2, Expect=8e-09]} {RNA1509_18221, RNA1509_50235} {RNA1310_18215, RNA1509_18221, RNA1509_50235} {RNA1509_18221, RNA1509_50235, RNA815_7209}

Mlig455_031605 {REF} {Length: 1733} {TRANSSPLICED} {Pfam: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) [PF10453.11, score=30.9]} {Human: ENSG00000083635, NUFIP1, NUFIP1, FMR1 interacting protein 1, [RH, Score=110, Expect=2e-25]} {Mouse: ENSMUSG00000022009, Nufip1, nuclear fragile X mental retardation protein interacting protein 1, [RH, Score=125, Expect=6e-31]} {Dmel: FBgn0036812, Nufip, [Score=60.5, Expect=2e-09]} {RNA1509_30149, RNA1509_38098, RNA1509_50235} {RNA1310_18215, RNA1509_30149, RNA1509_38098} {RNA1509_30149, RNA1509_38098, RNA815_7209}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA