TomoSeq data search

Data search

Results for MligTC455_23341

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_23341

114

2.38

Mlig455_050762

Neo: -

Age: logFC(26M/2M)=0.924

SHOC2

Mlig455_050762 {REF} {Length: 4706} {Pfam: Leucine rich repeat [PF13855.8, score=54.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=32.9]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=74.3, Expect=5e-14]; ENSG00000188306, LRRIQ4, leucine rich repeats and IQ motif containing 4, [Score=71.2, Expect=6e-13]; ENSG00000033122, LRRC7, leucine rich repeat containing 7, [Score=71.2, Expect=8e-13]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=74.7, Expect=3e-14]; ENSMUSG00000028176, Lrrc7, leucine rich repeat containing 7, [Score=72.4, Expect=2e-13]} {Dmel: FBgn0033984, Lap1, [Score=84.3, Expect=2e-17]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=65.5, Expect=2e-11]} {Smed: dd_Smed_v6_5407_0_1, dd_Smed_v6_5407_0_1, [Score=77.4, Expect=2e-15]} {RNA1509_15990} {RNA1310_35662, RNA1509_15990} {RNA1509_15990, RNA815_28491}

Cumulative graph for MligTC455_23341

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	1.495	2.065	0.54639	1.00000
RegionR2	-1.437	2.065	0.16966	0.51497
RegionR3	0.668	2.065	0.32771	0.86607
RegionR4	0.89	2.065	0.36674	0.68983
RegionR5	0.748	2.065	0.21936	0.52080
RegionR6	-0.143	2.065	0.85064	1.00000
RegionR7	0.115	2.065	0.92138	1.00000
RegionR8	-2.336	2.065	0.14668	0.69826

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-3.992	2.065	0.53619	1.00000
RegenerationR2	1.305	2.065	0.11477	0.52726
RegenerationR3	0.006	2.065	0.97793	1.00000
RegenerationR4	0.395	2.065	0.66852	0.94181
RegenerationR5	0.324	2.065	0.62057	0.91923
RegenerationR6	0.703	2.065	0.42040	0.75149
RegenerationBL	1.784	2.065	0.14034	0.44653
RegenerationTP	0.053	2.065	0.96697	1.00000

Genes with expression patterns similar to MligTC455_23341

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_23341	114	2.38	Mlig455_050762	Neo: - Age: logFC(26M/2M)=0.924	SHOC2	5	1.000	1.000	-	1.000	1.000	1.000	Mlig455_050762 {REF} {Length: 4706} {Pfam: Leucine rich repeat [PF13855.8, score=54.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=32.9]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=74.3, Expect=5e-14]; ENSG00000188306, LRRIQ4, leucine rich repeats and IQ motif containing 4, [Score=71.2, Expect=6e-13]; ENSG00000033122, LRRC7, leucine rich repeat containing 7, [Score=71.2, Expect=8e-13]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=74.7, Expect=3e-14]; ENSMUSG00000028176, Lrrc7, leucine rich repeat containing 7, [Score=72.4, Expect=2e-13]} {Dmel: FBgn0033984, Lap1, [Score=84.3, Expect=2e-17]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=65.5, Expect=2e-11]} {Smed: dd_Smed_v6_5407_0_1, dd_Smed_v6_5407_0_1, [Score=77.4, Expect=2e-15]} {RNA1509_15990} {RNA1310_35662, RNA1509_15990} {RNA1509_15990, RNA815_28491}
2.	MligTC455_40194	572	11.92	Mlig455_028533, Mlig455_064723	Neo: - Age: -		0.987	-	-	-	0.987	-	-	Mlig455_028533 {REF} {Length: 1551} {TRANSSPLICED} {Pfam: Apc13p protein [PF05839.13, score=20.4]} {RNA1509_15961} {RNA1310_42883, RNA1509_15961} {RNA1509_15961, RNA815_15235} Mlig455_064723 {REF} {Length: 1560} {TRANSSPLICED} {Pfam: Apc13p protein [PF05839.13, score=20.4]} {RNA1509_15961} {RNA1310_42883} {RNA815_15235}
3.	MligTC455_49223	194	4.04	Mlig455_051164	Neo: - Age: -		0.968	-	-	-	-	0.968	-	Mlig455_051164 {REF} {Length: 1528} {Smed: dd_Smed_v6_12148_0_2, dd_Smed_v6_12148_0_2, [Score=98.2, Expect=3e-24]} {RNA1509_45032} {RNA1310_28402} {RNA815_16677}
4.	MligTC455_36447	79	1.64	Mlig455_030167	Neo: - Age: -	HINT2	0.967	-	-	-	-	0.967	-	Mlig455_030167 {REF} {Length: 2336} {Pfam: HIT domain [PF01230.25, score=75.2]; Scavenger mRNA decapping enzyme C-term binding [PF11969.10, score=50.9]} {Human: ENSG00000137133, HINT2, histidine triad nucleotide binding protein 2, [Score=122, Expect=3e-35]; ENSG00000169567, HINT1, histidine triad nucleotide binding protein 1, [Score=119, Expect=2e-34]} {Mouse: ENSMUSG00000028470, Hint2, histidine triad nucleotide binding protein 2, [Score=124, Expect=5e-36]; ENSMUSG00000020267, Hint1, histidine triad nucleotide binding protein 1, [Score=120, Expect=4e-35]} {Dmel: FBgn0031459, CG2862, [Score=117, Expect=6e-34]} {Celegans: WBGene00009002, hint-1, Histidine triad nucleotide-binding protein 1, [Score=122, Expect=5e-36]} {Smed: dd_Smed_v6_3078_0_1, dd_Smed_v6_3078_0_1, [RH, Score=164, Expect=1e-52]} {RNA1509_15247} {RNA1310_24298} {RNA815_10173}
5.	MligTC455_53111	32	0.68	Mlig455_014472	Neo: - Age: -		0.962	-	-	-	-	0.962	-	Mlig455_014472 {REF} {Length: 2012} {TRANSSPLICED} {RNA1310_65341}
6.	MligTC455_20123	441	9.19	Mlig455_039213, Mlig455_053908	Neo: - Age: - Region-enriched R8: 2.517/0.01701	PQLC2	0.958	-	-	-	0.958	-	-	Mlig455_039213 {REF} {Length: 2566} {TRANSSPLICED} {Pfam: PQ loop repeat [PF04193.16, score=91.8]} {Human: ENSG00000040487, PQLC2, PQ loop repeat containing 2, [RH, Score=141, Expect=4e-39]} {Mouse: ENSMUSG00000028744, Pqlc2, PQ loop repeat containing 2, [RH, Score=134, Expect=9e-37]} {Celegans: WBGene00021546, laat-1, Lysosomal amino acid transporter 1, [RH, Score=153, Expect=6e-44]} {Smed: dd_Smed_v6_5526_0_1, dd_Smed_v6_5526_0_1, [RH, Score=211, Expect=3e-66]} {RNA1509_10641} {RNA1310_21562.1, RNA1509_10641} {RNA1509_10641, RNA815_9499} Mlig455_053908 {REF} {Length: 2583} {TRANSSPLICED} {Pfam: PQ loop repeat [PF04193.16, score=93.3]} {Human: ENSG00000040487, PQLC2, PQ loop repeat containing 2, [RH, Score=141, Expect=3e-39]} {Mouse: ENSMUSG00000028744, Pqlc2, PQ loop repeat containing 2, [RH, Score=134, Expect=2e-36]} {Celegans: WBGene00021546, laat-1, Lysosomal amino acid transporter 1, [RH, Score=151, Expect=3e-43]} {Smed: dd_Smed_v6_5526_0_1, dd_Smed_v6_5526_0_1, [RH, Score=216, Expect=5e-68]} {RNA1509_10641, RNA1509_55139, RNA1509_56871} {RNA1310_21562.1, RNA1509_55139, RNA1509_56871} {RNA1509_55139, RNA1509_56871, RNA815_9499}
7.	MligTC455_18358	10	0.21	Mlig455_042503	Neo: - Age: Up-Down-Up, logFC(26M/2M)=1.814	NWD2	0.955	-	-	-	-	0.955	-	Mlig455_042503 {REF} {Length: 6526} {TRANSSPLICED} {Pfam: NACHT domain [PF05729.14, score=37.5]; AAA domain [PF13401.8, score=19.6]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=220, Expect=7e-57]; ENSG00000188039, NWD1, NACHT and WD repeat domain containing 1, [Score=209, Expect=2e-53]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=229, Expect=7e-60]} {Dmel: FBgn0038397, CG10185, [Score=347, Expect=1e-96]} {Celegans: WBGene00020254, T05C3.2, [Score=312, Expect=2e-85]} {Smed: dd_Smed_v6_11085_0_1, dd_Smed_v6_11085_0_1, [Score=204, Expect=2e-52]} {RNA1509_48979} {RNA1310_12147} {RNA815_49134}
8.	MligTC455_40396	351	7.31	Mlig455_043026	Neo: - Age: -	UCHL3	0.954	-	-	-	-	-	0.954	Mlig455_043026 {REF} {Length: 3026} {Pfam: Ubiquitin carboxyl-terminal hydrolase, family 1 [PF01088.23, score=191.3]} {Human: ENSG00000118939, UCHL3, ubiquitin C-terminal hydrolase L3, [RH, Score=203, Expect=2e-65]} {Mouse: ENSMUSG00000022111, Uchl3, ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase), [RH, Score=203, Expect=1e-65]; ENSMUSG00000035337, Uchl4, ubiquitin carboxyl-terminal esterase L4, [RH, Score=194, Expect=6e-62]} {Dmel: FBgn0010288, Uch, Ubiquitin carboxy-terminal hydrolase, [RH, Score=174, Expect=1e-54]} {Celegans: WBGene00006721, ubh-1, Ubiquitin carboxyl-terminal hydrolase, [RH, Score=109, Expect=3e-29]} {Smed: dd_Smed_v6_7488_0_1, dd_Smed_v6_7488_0_1, [RH, Score=189, Expect=1e-60]} {RNA1509_16357} {RNA1310_29575} {RNA815_15587}

Berezikov Lab - 2020-2021 © ERIBA