TomoSeq data search

Data search

Results for MligTC455_23403

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_23403	85	1.76	Mlig455_006017	Neo: Irradiation Age: Up-Down-Up, logFC(26M/2M)=0.388 Region-enriched R2: 4.109/0.01489	CNOT6	Mlig455_006017 {REF} {Length: 2437} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=83.5]; Leucine Rich repeats (2 copies) [PF12799.9, score=44.6]; Leucine rich repeat [PF13855.8, score=41.9]; Leucine Rich repeat [PF13516.8, score=21.0]; Leucine Rich Repeat [PF00560.35, score=19.4]} {Human: ENSG00000113300, CNOT6, CCR4-NOT transcription complex subunit 6, [Score=435, Expect=4e-146]; ENSG00000138767, CNOT6L, CCR4-NOT transcription complex subunit 6 like, [Score=419, Expect=3e-140]} {Mouse: ENSMUSG00000034724, Cnot6l, CCR4-NOT transcription complex, subunit 6-like, [Score=437, Expect=4e-147]; ENSMUSG00000020362, Cnot6, CCR4-NOT transcription complex, subunit 6, [Score=431, Expect=9e-145]} {Dmel: FBgn0011725, twin, [Score=451, Expect=5e-153]} {Celegans: WBGene00000376, ccr-4, CCR (Yeast CCR4/NOT complex component) homolog; CCR4, [Score=417, Expect=3e-139]} {Smed: dd_Smed_v6_5045_0_1, dd_Smed_v6_5045_0_1, [Score=413, Expect=1e-137]} {RNA1509_52157, RNA1509_8779} {RNA1310_6379, RNA1509_52157} {RNA1509_52157, RNA815_3181}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_23403

1.76

Mlig455_006017

Neo: Irradiation

Age: Up-Down-Up, logFC(26M/2M)=0.388

Region-enriched R2: 4.109/0.01489

CNOT6

Mlig455_006017 {REF} {Length: 2437} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=83.5]; Leucine Rich repeats (2 copies) [PF12799.9, score=44.6]; Leucine rich repeat [PF13855.8, score=41.9]; Leucine Rich repeat [PF13516.8, score=21.0]; Leucine Rich Repeat [PF00560.35, score=19.4]} {Human: ENSG00000113300, CNOT6, CCR4-NOT transcription complex subunit 6, [Score=435, Expect=4e-146]; ENSG00000138767, CNOT6L, CCR4-NOT transcription complex subunit 6 like, [Score=419, Expect=3e-140]} {Mouse: ENSMUSG00000034724, Cnot6l, CCR4-NOT transcription complex, subunit 6-like, [Score=437, Expect=4e-147]; ENSMUSG00000020362, Cnot6, CCR4-NOT transcription complex, subunit 6, [Score=431, Expect=9e-145]} {Dmel: FBgn0011725, twin, [Score=451, Expect=5e-153]} {Celegans: WBGene00000376, ccr-4, CCR (Yeast CCR4/NOT complex component) homolog; CCR4, [Score=417, Expect=3e-139]} {Smed: dd_Smed_v6_5045_0_1, dd_Smed_v6_5045_0_1, [Score=413, Expect=1e-137]} {RNA1509_52157, RNA1509_8779} {RNA1310_6379, RNA1509_52157} {RNA1509_52157, RNA815_3181}

Cumulative graph for MligTC455_23403

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-7.958	1.983	0.99978	1.00000
RegionR2	4.109	1.983	0.00058	0.01489
RegionR3	1.924	1.983	0.12615	0.61165
RegionR4	0.93	1.983	0.38000	0.70436
RegionR5	1.774	1.983	0.11509	0.33603
RegionR6	2.06	1.983	0.10222	0.58679
RegionR7	1.092	1.983	0.49350	1.00000
RegionR8	-3.932	1.983	0.99981	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	3.176	1.983	0.99974	1.00000
RegenerationR2	-1.004	1.983	0.14906	0.58229
RegenerationR3	0.631	1.983	0.43435	0.82371
RegenerationR4	0.908	1.983	0.13849	0.55975
RegenerationR5	0.381	1.983	0.52275	0.87079
RegenerationR6	0.115	1.983	0.90593	1.00000
RegenerationBL	1.969	1.983	0.27401	0.63389
RegenerationTP	4.197	1.983	0.02133	0.24931

Genes with expression patterns similar to MligTC455_23403

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_23403	85	1.76	Mlig455_006017	Neo: Irradiation Age: Up-Down-Up, logFC(26M/2M)=0.388 Region-enriched R2: 4.109/0.01489	CNOT6	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_006017 {REF} {Length: 2437} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=83.5]; Leucine Rich repeats (2 copies) [PF12799.9, score=44.6]; Leucine rich repeat [PF13855.8, score=41.9]; Leucine Rich repeat [PF13516.8, score=21.0]; Leucine Rich Repeat [PF00560.35, score=19.4]} {Human: ENSG00000113300, CNOT6, CCR4-NOT transcription complex subunit 6, [Score=435, Expect=4e-146]; ENSG00000138767, CNOT6L, CCR4-NOT transcription complex subunit 6 like, [Score=419, Expect=3e-140]} {Mouse: ENSMUSG00000034724, Cnot6l, CCR4-NOT transcription complex, subunit 6-like, [Score=437, Expect=4e-147]; ENSMUSG00000020362, Cnot6, CCR4-NOT transcription complex, subunit 6, [Score=431, Expect=9e-145]} {Dmel: FBgn0011725, twin, [Score=451, Expect=5e-153]} {Celegans: WBGene00000376, ccr-4, CCR (Yeast CCR4/NOT complex component) homolog; CCR4, [Score=417, Expect=3e-139]} {Smed: dd_Smed_v6_5045_0_1, dd_Smed_v6_5045_0_1, [Score=413, Expect=1e-137]} {RNA1509_52157, RNA1509_8779} {RNA1310_6379, RNA1509_52157} {RNA1509_52157, RNA815_3181}
2.	MligTC455_49707	131	2.73	Mlig455_061970	Neo: - Age: -	APH1A	0.974	-	-	-	-	-	0.974	Mlig455_061970 {REF} {Length: 1352} {TRANSSPLICED} {Pfam: Aph-1 protein [PF06105.14, score=92.4]} {Human: ENSG00000117362, APH1A, aph-1 homolog A, gamma-secretase subunit, [Score=58.9, Expect=6e-10]} {Mouse: ENSMUSG00000015750, Aph1a, aph1 homolog A, gamma secretase subunit, [Score=59.3, Expect=3e-10]} {Dmel: FBgn0031458, aph-1, anterior pharynx defective 1, [Score=68.6, Expect=8e-14]} {RNA1509_52031} {RNA1310_994} {RNA815_11610}
3.	MligTC455_09188	89	1.85	Mlig455_011076	Neo: Germline Age: Up-Down-Down		0.96	-	-	-	-	0.960	-	Mlig455_011076 {REF} {Length: 684} {RNA1509_52710} {RNA1310_30751} {RNA815_57718}
4.	MligTC455_10098	245	5.11	Mlig455_031484	Neo: Germline Age: - Region-enriched R7: 3.855/0.00000		0.96	-	-	-	-	0.960	-	Mlig455_031484 {REF} {Length: 2134} {Pfam: EGF-like domain [PF00008.29, score=21.9]; Thrombospondin type 1 domain [PF00090.21, score=20.4]} {Smed: dd_Smed_v6_20221_0_1, dd_Smed_v6_20221_0_1, [Score=84.3, Expect=3e-17]} {RNA1509_27034} {RNA1310_8577.1, RNA1509_27034} {RNA1509_27034, RNA815_12919.1}
5.	MligTC455_27266	126	2.63	Mlig455_013626, Mlig455_061445	Neo: Germline Age: Up-Down-Down Region-enriched R4: 2.657/0.02539		0.96	-	-	-	-	0.960	-	Mlig455_013626 {REF} {Length: 2568} {RNA1310_34361} Mlig455_061445 {REF} {Length: 1248} {RNA1310_34361}
6.	MligTC455_50925	137	2.85	Mlig455_003574	Neo: Irradiation Age: Up-Down-Down, logFC(26M/2M)=-0.374 Region-enriched R4: 5.281/0.00000 Regeneration-upregulated BL: 6.057 Regeneration-enriched BL: 6.057		0.96	-	-	-	-	0.960	-	Mlig455_003574 {REF} {Length: 2905} {Smed: dd_Smed_v6_22487_0_1, dd_Smed_v6_22487_0_1, [Score=70.5, Expect=3e-13]} {RNA1509_3548} {RNA1310_4106, RNA1509_3548} {RNA1509_3548, RNA815_21210.1}
7.	MligTC455_35364	266	5.55	Mlig455_070630	Neo: Germline Age: Up-Down-Down, logFC(26M/2M)=-0.469 Region-specific R4: 5.666 Region-enriched R4: 2.478/0.00879		0.957	-	-	-	-	0.957	-	Mlig455_070630 {REF} {Length: 2728} {RNA1509_43675, RNA1509_44638, RNA1509_46183, RNA1509_6283, RNA1509_6480} {RNA1310_7372, RNA1509_43675, RNA1509_44638, RNA1509_46183, RNA1509_6283, RNA1509_6480} {RNA1509_43675, RNA1509_44638, RNA1509_46183, RNA1509_6283, RNA1509_6480, RNA815_2391}
8.	MligTC455_13978	388	8.08	Mlig455_007531, Mlig455_024787, Mlig455_030583	Neo: Germline Age: Up-Down-Down Region-specific R4: 6.585 Region-enriched R4: 2.995/0.00485		0.953	-	-	-	-	0.953	-	Mlig455_007531 {REF} {Length: 2595} {RNA1509_32577} {RNA1310_9161.1} {RNA815_24289} Mlig455_024787 {REF} {Length: 3379} {RNA1509_32577} {RNA1310_9161.1} {RNA815_24289} Mlig455_030583 {REF} {Length: 3481} {RNA1509_32577, RNA1509_55493, RNA1509_59638} {RNA1310_9161.1, RNA1509_32577, RNA1509_55493, RNA1509_59638} {RNA1509_32577, RNA1509_55493, RNA1509_59638, RNA815_24289}