M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23465

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23465 305 6.36 Mlig455_063585

Neo: -

Age: logFC(26M/2M)=-0.375

 Mlig455_063585 {REF} {Length: 1984} {RNA1509_47251} {RNA1310_23310} {RNA815_27807}

Cumulative graph for MligTC455_23465

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.732 2.99 0.67125 1.00000
RegionR2 0.499 2.99 0.48347 0.86704
RegionR3 -0.656 2.99 0.27569 0.82027
RegionR4 0.643 2.99 0.34609 0.66698
RegionR5 -0.93 2.99 0.10220 0.30957
RegionR6 -0.28 2.99 0.62568 1.00000
RegionR7 0.211 2.99 0.77436 1.00000
RegionR8 -0.22 2.99 0.81736 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.347 2.99 0.87597 1.00000
RegenerationR2 -0.084 2.99 0.88454 1.00000
RegenerationR3 0.616 2.99 0.36240 0.77833
RegenerationR4 0.369 2.99 0.57344 0.90307
RegenerationR5 1.363 2.99 0.02979 0.28963
RegenerationR6 0.318 2.99 0.65179 0.89937
RegenerationBL 0.446 2.99 0.56992 0.92347
RegenerationTP -1.33 2.99 0.18667 0.62371


Genes with expression patterns similar to MligTC455_23465

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23465 305 6.36 Mlig455_063585

Neo: -

Age: logFC(26M/2M)=-0.375

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_063585 {REF} {Length: 1984} {RNA1509_47251} {RNA1310_23310} {RNA815_27807}
2. MligTC455_21344 366 7.62 Mlig455_006133

Neo: -

Age: logFC(26M/2M)=-0.207

 THRA 1.683 - 0.705 - - - 0.978 Mlig455_006133 {REF} {Length: 3631} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=71.4]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=23.0]} {Human: ENSG00000126351, THRA, thyroid hormone receptor alpha, [Score=106, Expect=2e-24]} {Mouse: ENSMUSG00000058756, Thra, thyroid hormone receptor alpha, [Score=105, Expect=6e-24]} {Dmel: FBgn0000546, EcR, Ecdysone receptor, [Score=130, Expect=8e-32]} {Celegans: WBGene00000908, daf-12, Nuclear hormone receptor family member daf-12, [Score=107, Expect=2e-24]} {Smed: dd_Smed_v6_11714_0_1, dd_Smed_v6_11714_0_1, [RH, Score=317, Expect=6e-103]} {RNA1509_12983, RNA1509_23282, RNA1509_30466} {RNA1310_17232, RNA1509_23282, RNA1509_30466} {RNA1509_23282, RNA1509_30466, RNA815_5060}
3. MligTC455_32294 457 9.52 Mlig455_005848

Neo: -

Age: -

 MOSPD2 0.959 - - - - - 0.959 Mlig455_005848 {REF} {Length: 2942} {TRANSSPLICED} {Pfam: CRAL/TRIO domain [PF00650.22, score=63.1]; MSP (Major sperm protein) domain [PF00635.28, score=53.4]} {Human: ENSG00000130150, MOSPD2, motile sperm domain containing 2, [Score=160, Expect=9e-44]} {Mouse: ENSMUSG00000061778, Mospd2, motile sperm domain containing 2, [Score=160, Expect=2e-44]} {Dmel: FBgn0053523, CG33523, [Score=107, Expect=3e-25]} {Celegans: WBGene00015148, hpo-28, Major sperm protein, [Score=91.3, Expect=7e-20]} {Smed: dd_Smed_v6_4406_0_1, dd_Smed_v6_4406_0_1, [Score=56.2, Expect=6e-09]} {RNA1509_20333, RNA1509_41794, RNA1509_47038} {RNA1310_12055, RNA1509_20333, RNA1509_41794, RNA1509_47038} {RNA1509_20333, RNA1509_41794, RNA1509_47038, RNA815_5868}
4. MligTC455_23295 379 7.9 Mlig455_002842

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_002842 {REF} {Length: 2189} {Pfam: Tetraspanin family [PF00335.22, score=71.6]} {Mouse: ENSMUSG00000027215, Cd82, CD82 antigen, [Score=58.2, Expect=3e-09]} {Dmel: FBgn0032943, Tsp39D, Tetraspanin 39D, [Score=50.8, Expect=5e-07]} {Smed: dd_Smed_v6_1003_0_1, dd_Smed_v6_1003_0_1, [Score=50.8, Expect=4e-07]} {RNA1509_19886} {RNA1310_19343} {RNA815_7890}
5. MligTC455_37322 147 3.06 Mlig455_022890

Neo: -

Age: Down-Up-Down

 SLC22A18 0.955 - - - 0.955 - - Mlig455_022890 {REF} {Length: 2172} {Pfam: Major Facilitator Superfamily [PF07690.18, score=39.3]} {Human: ENSG00000110628, SLC22A18, solute carrier family 22 member 18, [RH, Score=83.6, Expect=2e-18]; ENSG00000276130, SLC22A18, solute carrier family 22 member 18, [RH, Score=83.6, Expect=2e-18]} {Mouse: ENSMUSG00000000154, Slc22a18, solute carrier family 22 (organic cation transporter), member 18, [Score=90.5, Expect=1e-20]} {RNA1509_11252} {RNA1310_18158} {RNA815_723}
6. MligTC455_25847 254 5.29 Mlig455_016979, Mlig455_021250

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.403

 SDC1 0.954 - - - - - 0.954

Mlig455_016979 {REF} {Length: 3271} {Pfam: SEA domain [PF01390.22, score=29.3]} {RNA1509_4593} {RNA1310_11748.2} {RNA815_4087}

Mlig455_021250 {REF} {Length: 3865} {TRANSSPLICED} {Pfam: Syndecan domain [PF01034.22, score=65.6]; SEA domain [PF01390.22, score=22.9]} {Human: ENSG00000115884, SDC1, syndecan 1, [Score=58.5, Expect=2e-08]} {Mouse: ENSMUSG00000020592, Sdc1, syndecan 1, [Score=59.3, Expect=8e-09]} {Dmel: FBgn0010415, Sdc, Syndecan, [RH, Score=72.8, Expect=4e-13]} {Celegans: WBGene00004749, sdn-1, Probable syndecan, [RH, Score=63.2, Expect=2e-10]} {Smed: dd_Smed_v6_14098_0_1, dd_Smed_v6_14098_0_1, [Score=66.6, Expect=1e-11]} {RNA1509_11964} {RNA1310_822.1} {RNA815_3622}
7. MligTC455_48719 1459 30.39 Mlig455_053641

Neo: Int S/G2/M

Age: -

 COA4 0.95 - - - - - 0.950 Mlig455_053641 {REF} {Length: 578} {TRANSSPLICED} {Pfam: CHCH domain [PF06747.15, score=23.2]} {Human: ENSG00000181924, COA4, cytochrome c oxidase assembly factor 4 homolog, [RH, Score=63.2, Expect=2e-14]} {Mouse: ENSMUSG00000044881, Coa4, cytochrome c oxidase assembly factor 4, [RH, Score=65.1, Expect=2e-15]} {Dmel: FBgn0265083, CG44194, [RH, Score=62.4, Expect=1e-14]} {Celegans: WBGene00011857, T20D3.3, [RH, Score=63.2, Expect=9e-15]} {Smed: dd_Smed_v6_4811_0_1, dd_Smed_v6_4811_0_1, [RH, Score=62.4, Expect=6e-15]} {RNA1509_11132, RNA1509_14110, RNA1509_17460} {RNA1310_61414, RNA1509_11132, RNA1509_14110, RNA1509_17460} {RNA1509_11132, RNA1509_14110, RNA1509_17460, RNA815_16665.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA