TomoSeq data search

Data search

Results for MligTC455_23477

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_23477

479

9.98

Mlig455_003549

Neo: -

Age: -

Region-enriched R7: 1.624/0.02725

PCDH11X

Mlig455_003549 {REF} {Length: 5660} {TRANSSPLICED} {Pfam: Cadherin domain [PF00028.19, score=291.6]; Cadherin-like [PF16184.7, score=56.7]; Cadherin-like [PF08266.14, score=29.3]; Bacterial cadherin-like domain [PF17803.3, score=23.2]} {Human: ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=272, Expect=2e-74]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=269, Expect=2e-73]} {Mouse: ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=259, Expect=3e-70]; ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=249, Expect=2e-67]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=248, Expect=2e-67]} {Dmel: FBgn0001075, ft, fat, [Score=234, Expect=3e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=150, Expect=2e-36]} {Smed: dd_Smed_v6_11223_0_1, dd_Smed_v6_11223_0_1, [RH, Score=346, Expect=5e-101]} {RNA1509_12119, RNA1509_39096} {RNA1310_1326.1, RNA1509_12119, RNA1509_39096} {RNA1509_12119, RNA1509_39096, RNA815_1431}

Cumulative graph for MligTC455_23477

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	2.918	3.543	0.00125	0.11600
RegionR2	-1.266	3.543	0.02907	0.19251
RegionR3	-1.412	3.543	0.00627	0.11097
RegionR4	-0.077	3.543	0.89426	1.00000
RegionR5	-0.645	3.543	0.15809	0.41738
RegionR6	-0.639	3.543	0.19630	0.76504
RegionR7	1.624	3.543	0.00072	0.02725
RegionR8	-0.503	3.543	0.55231	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-9.123	3.543	0.00261	0.26205
RegenerationR2	0.58	3.543	0.28696	0.72976
RegenerationR3	0.882	3.543	0.14651	0.57364
RegenerationR4	-0.104	3.543	0.86175	1.00000
RegenerationR5	0.554	3.543	0.32016	0.74366
RegenerationR6	1.023	3.543	0.07044	0.33204
RegenerationBL	0.467	3.543	0.42087	0.78914
RegenerationTP	-0.641	3.543	0.37425	0.81126

Genes with expression patterns similar to MligTC455_23477

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_23477	479	9.98	Mlig455_003549	Neo: - Age: - Region-enriched R7: 1.624/0.02725	PCDH11X	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_003549 {REF} {Length: 5660} {TRANSSPLICED} {Pfam: Cadherin domain [PF00028.19, score=291.6]; Cadherin-like [PF16184.7, score=56.7]; Cadherin-like [PF08266.14, score=29.3]; Bacterial cadherin-like domain [PF17803.3, score=23.2]} {Human: ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=272, Expect=2e-74]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=269, Expect=2e-73]} {Mouse: ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=259, Expect=3e-70]; ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=249, Expect=2e-67]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=248, Expect=2e-67]} {Dmel: FBgn0001075, ft, fat, [Score=234, Expect=3e-62]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=150, Expect=2e-36]} {Smed: dd_Smed_v6_11223_0_1, dd_Smed_v6_11223_0_1, [RH, Score=346, Expect=5e-101]} {RNA1509_12119, RNA1509_39096} {RNA1310_1326.1, RNA1509_12119, RNA1509_39096} {RNA1509_12119, RNA1509_39096, RNA815_1431}
2.	MligTC455_41034	375	7.81	Mlig455_001164	Neo: - Age: Down-Up-Down		0.987	-	-	-	-	-	0.987	Mlig455_001164 {REF} {Length: 626} {NoTransDecoderORF} {RNA1509_40889} {RNA1310_48760, RNA1509_40889} {RNA1509_40889, RNA815_36110.2}
3.	MligTC455_48030	242	5.05	Mlig455_068309	Neo: - Age: - Regeneration-upregulated BL: 4.179 Regeneration-enriched BL: 4.179	SPSB4	0.982	-	-	-	-	0.982	-	Mlig455_068309 {REF} {Length: 2561} {TRANSSPLICED} {Pfam: SPRY domain [PF00622.30, score=64.3]; SOCS box [PF07525.18, score=33.5]} {Human: ENSG00000175093, SPSB4, splA/ryanodine receptor domain and SOCS box containing 4, [Score=315, Expect=2e-106]; ENSG00000171621, SPSB1, splA/ryanodine receptor domain and SOCS box containing 1, [Score=312, Expect=2e-105]} {Mouse: ENSMUSG00000039911, Spsb1, splA/ryanodine receptor domain and SOCS box containing 1, [Score=313, Expect=4e-106]; ENSMUSG00000046997, Spsb4, splA/ryanodine receptor domain and SOCS box containing 4, [Score=311, Expect=4e-105]} {Dmel: FBgn0026238, gus, gustavus, [Score=307, Expect=1e-103]} {Celegans: WBGene00021597, spsb-1, SPSB (SPry and Socs Box) family, [RH, Score=261, Expect=8e-84]} {Smed: dd_Smed_v6_9905_0_1, dd_Smed_v6_9905_0_1, [Score=213, Expect=1e-66]} {RNA1509_26491} {RNA1310_11847} {RNA815_5105}
4.	MligTC455_19169	241	5.01	Mlig455_010277	Neo: - Age: Down-Up-Down		0.973	-	-	-	-	-	0.973	Mlig455_010277 {REF} {Length: 2226} {Pfam: Zinc-finger double-stranded RNA-binding [PF12171.10, score=23.6]; Zinc-finger of C2H2 type [PF12874.9, score=19.4]} {RNA1509_23976} {RNA1310_15327} {RNA815_15334}
5.	MligTC455_51486	217	4.53	Mlig455_022112	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.715 Region-enriched R8: 3.184/0.01547		0.965	-	-	-	-	0.965	-	Mlig455_022112 {REF} {Length: 1592} {RNA1310_21476.1} {RNA815_10714}
6.	MligTC455_10240	386	8.04	Mlig455_048252	Neo: - Age: -	FRRS1	0.964	-	-	-	-	0.964	-	Mlig455_048252 {REF} {Length: 2669} {Pfam: Eukaryotic cytochrome b561 [PF03188.18, score=34.1]; Tight junction protein, Claudin-like [PF06653.13, score=29.1]} {Human: ENSG00000156869, FRRS1, ferric chelate reductase 1, [RH, Score=122, Expect=4e-29]} {Mouse: ENSMUSG00000033386, Frrs1, ferric-chelate reductase 1, [RH, Score=135, Expect=1e-33]} {Dmel: FBgn0034067, CG8399, [Score=126, Expect=1e-30]} {Celegans: WBGene00007339, C05D12.1, [RH, Score=105, Expect=5e-24]} {Smed: dd_Smed_v6_4028_0_1, dd_Smed_v6_4028_0_1, [RH, Score=265, Expect=4e-83]} {RNA1509_38254} {RNA1310_9177.1, RNA1509_38254} {RNA1509_38254, RNA815_3122.1}
7.	MligTC455_33667	5958	124.13	Mlig455_007432, Mlig455_009113, Mlig455_018420, Mlig455_018422, Mlig455_019321, Mlig455_019779, Mlig455_022265, Mlig455_030138, Mlig455_039042, Mlig455_044740, Mlig455_046763, Mlig455_048838, Mlig455_070035	Neo: - Age: logFC(26M/2M)=-0.692		0.958	-	-	-	-	-	0.958	Mlig455_007432 {REF} {Length: 4106} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_38197} {RNA1310_15214.1, RNA1509_38197} {RNA1509_38197, RNA815_16073} Mlig455_009113 {REF} {Length: 798} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_018420 {REF} {Length: 1199} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_23746} {RNA815_16073} Mlig455_018422 {REF} {Length: 782} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_019321 {REF} {Length: 772} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_019779 {REF} {Length: 770} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_022265 {REF} {Length: 730} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_030138 {REF} {Length: 769} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_039042 {REF} {Length: 772} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_044740 {REF} {Length: 744} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_046763 {REF} {Length: 752} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_048838 {REF} {Length: 772} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_070035 {REF} {Length: 730} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_23746} {RNA815_16073}
8.	MligTC455_23428	668	13.92	Mlig455_031275	Neo: - Age: -	ALKBH3	0.957	-	-	-	-	-	0.957	Mlig455_031275 {REF} {Length: 3723} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=112.8]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [RH, Score=189, Expect=9e-56]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [RH, Score=183, Expect=2e-53]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [RH, Score=163, Expect=3e-46]} {RNA1509_12177, RNA1509_26961} {RNA1310_16694, RNA1509_12177, RNA1509_26961} {RNA1509_12177, RNA1509_26961, RNA815_12533}
9.	MligTC455_36923	195	4.06	Mlig455_043016	Neo: - Age: -	EHBP1L1	0.956	-	-	-	-	-	0.956	Mlig455_043016 {REF} {Length: 4185} {TRANSSPLICED} {Pfam: Bivalent Mical/EHBP Rab binding domain [PF12130.10, score=112.9]; Calponin homology (CH) domain [PF00307.33, score=78.3]; N-terminal C2 in EEIG1 and EHBP1 proteins [PF10358.11, score=49.3]; CAMSAP CH domain [PF11971.10, score=22.7]} {Human: ENSG00000173442, EHBP1L1, EH domain binding protein 1 like 1, [RH, Score=295, Expect=5e-91]} {Mouse: ENSMUSG00000024937, Ehbp1l1, EH domain binding protein 1-like 1, [Score=296, Expect=4e-88]} {Dmel: FBgn0034180, Ehbp1, Eps15 homology domain containing protein-binding protein 1, [RH, Score=166, Expect=4e-42]} {Celegans: WBGene00009098, ehbp-1, EH (Eps-15-homology) domain Binding Protein family, [RH, Score=124, Expect=7e-29]} {Smed: dd_Smed_v6_5788_0_1, dd_Smed_v6_5788_0_1, [Score=390, Expect=1e-124]} {RNA1509_4997} {RNA1310_4043} {RNA815_4057}
10.	MligTC455_50497	191	3.98	Mlig455_029839	Neo: - Age: Down-Up-Down		0.956	-	-	-	-	0.956	-	Mlig455_029839 {REF} {Length: 1683} {RNA1509_16466} {RNA1310_2873} {RNA815_25176}
11.	MligTC455_23457	314	6.54	Mlig455_029520	Neo: - Age: Up-Down-Up Region-enriched R7: 5.927/0.00000 Region-enriched R6: 3.975/0.00362 Regeneration-upregulated BL: 4.346 Regeneration-enriched BL: 4.346	FZD10	0.952	-	-	-	-	0.952	-	Mlig455_029520 {REF} {Length: 3781} {TRANSSPLICED} {Pfam: Frizzled/Smoothened family membrane region [PF01534.19, score=272.7]; Fz domain [PF01392.24, score=63.7]} {Human: ENSG00000111432, FZD10, frizzled class receptor 10, [Score=275, Expect=7e-83]} {Mouse: ENSMUSG00000081683, Fzd10, frizzled class receptor 10, [Score=273, Expect=4e-82]; ENSMUSG00000049791, Fzd4, frizzled class receptor 4, [Score=267, Expect=2e-80]; ENSMUSG00000049551, Fzd9, frizzled class receptor 9, [Score=264, Expect=7e-79]} {Dmel: FBgn0016797, fz2, frizzled 2, [Score=198, Expect=4e-54]} {Celegans: WBGene00000478, cfz-2, Frizzled-2, [Score=210, Expect=3e-59]} {Smed: dd_Smed_v6_11650_0_1, dd_Smed_v6_11650_0_1, [Score=259, Expect=1e-76]} {RNA1310_57348} {RNA815_40236}
12.	MligTC455_24769	227	4.72	Mlig455_027516	Neo: - Age: - Regeneration-upregulated BL: 4.185 Regeneration-enriched BL: 4.185	AMBRA1	0.952	-	-	-	-	0.952	-	Mlig455_027516 {REF} {Length: 4785} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=29.9]} {Human: ENSG00000110497, AMBRA1, autophagy and beclin 1 regulator 1, [RH, Score=79.7, Expect=1e-14]} {Mouse: ENSMUSG00000040506, Ambra1, autophagy/beclin 1 regulator 1, [RH, Score=79.7, Expect=9e-15]} {RNA1509_17935} {RNA1310_8113.1, RNA1509_17935} {RNA1509_17935, RNA815_408.1}
13.	MligTC455_19453	293	6.11	Mlig455_067237	Neo: - Age: -	CLPTM1L	0.951	-	-	-	-	-	0.951	Mlig455_067237 {REF} {Length: 3590} {TRANSSPLICED} {Pfam: Cleft lip and palate transmembrane protein 1 (CLPTM1) [PF05602.14, score=306.9]} {Human: ENSG00000049656, CLPTM1L, CLPTM1 like, [RH, Score=448, Expect=2e-152]; ENSG00000274811, CLPTM1L, CLPTM1 like, [RH, Score=448, Expect=2e-152]} {Mouse: ENSMUSG00000021610, Clptm1l, CLPTM1-like, [RH, Score=458, Expect=2e-156]} {Dmel: FBgn0030456, CG4332, [RH, Score=418, Expect=1e-140]} {Celegans: WBGene00011761, T13H5.8, [RH, Score=407, Expect=2e-136]} {Smed: dd_Smed_v6_2192_0_1, dd_Smed_v6_2192_0_1, [RH, Score=448, Expect=3e-153]} {RNA1509_42391} {RNA1310_12720.1, RNA1509_42391} {RNA1509_42391, RNA815_4561}

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