M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23664

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23664 269 5.60 Mlig455_041544

Neo: -

Age: Down-Up-Down

 CD81 Mlig455_041544 {REF} {Length: 3247} {Pfam: Tetraspanin family [PF00335.22, score=143.7]} {Human: ENSG00000110651, CD81, CD81 molecule, [RH, Score=95.5, Expect=4e-23]; ENSG00000134198, TSPAN2, tetraspanin 2, [RH, Score=92.4, Expect=3e-22]; ENSG00000143119, CD53, CD53 molecule, [RH, Score=91.3, Expect=1e-21]} {Mouse: ENSMUSG00000027858, Tspan2, tetraspanin 2, [RH, Score=97.8, Expect=2e-24]; ENSMUSG00000037706, Cd81, CD81 antigen, [RH, Score=94.7, Expect=4e-23]} {Dmel: FBgn0027865, Tsp96F, Tetraspanin 96F, [RH, Score=107, Expect=6e-28]} {Celegans: WBGene00006632, tsp-6, Tetraspanin, [Score=70.5, Expect=2e-14]} {Smed: dd_Smed_v6_4080_0_1, dd_Smed_v6_4080_0_1, [RH, Score=132, Expect=1e-37]} {RNA1509_11949, RNA1509_53170, RNA1509_5692} {RNA1310_14356, RNA1509_11949, RNA1509_53170, RNA1509_5692} {RNA1509_11949, RNA1509_53170, RNA1509_5692, RNA815_6172.1}

Cumulative graph for MligTC455_23664

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.852 2.898 0.99959 1.00000
RegionR2 2.122 2.898 0.03212 0.20387
RegionR3 1.467 2.898 0.13769 0.63474
RegionR4 1.036 2.898 0.32681 0.64462
RegionR5 1.084 2.898 0.27933 0.60698
RegionR6 2.048 2.898 0.02172 0.26675
RegionR7 1.952 2.898 0.08846 0.57054
RegionR8 -4.858 2.898 0.99995 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.197 2.898 0.17108 0.91495
RegenerationR2 -0.291 2.898 0.54237 0.88937
RegenerationR3 0.669 2.898 0.23256 0.66713
RegenerationR4 0.753 2.898 0.19135 0.63574
RegenerationR5 1.009 2.898 0.05043 0.36175
RegenerationR6 0.5 2.898 0.35798 0.70285
RegenerationBL 2.018 2.898 0.12034 0.41154
RegenerationTP 4.128 2.898 0.00217 0.07550


Genes with expression patterns similar to MligTC455_23664

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23664 269 5.6 Mlig455_041544

Neo: -

Age: Down-Up-Down

 CD81 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_041544 {REF} {Length: 3247} {Pfam: Tetraspanin family [PF00335.22, score=143.7]} {Human: ENSG00000110651, CD81, CD81 molecule, [RH, Score=95.5, Expect=4e-23]; ENSG00000134198, TSPAN2, tetraspanin 2, [RH, Score=92.4, Expect=3e-22]; ENSG00000143119, CD53, CD53 molecule, [RH, Score=91.3, Expect=1e-21]} {Mouse: ENSMUSG00000027858, Tspan2, tetraspanin 2, [RH, Score=97.8, Expect=2e-24]; ENSMUSG00000037706, Cd81, CD81 antigen, [RH, Score=94.7, Expect=4e-23]} {Dmel: FBgn0027865, Tsp96F, Tetraspanin 96F, [RH, Score=107, Expect=6e-28]} {Celegans: WBGene00006632, tsp-6, Tetraspanin, [Score=70.5, Expect=2e-14]} {Smed: dd_Smed_v6_4080_0_1, dd_Smed_v6_4080_0_1, [RH, Score=132, Expect=1e-37]} {RNA1509_11949, RNA1509_53170, RNA1509_5692} {RNA1310_14356, RNA1509_11949, RNA1509_53170, RNA1509_5692} {RNA1509_11949, RNA1509_53170, RNA1509_5692, RNA815_6172.1}
2. MligTC455_54175 1327 27.64 Mlig455_059834

Neo: Irradiation

Age: Up-Down-Down

Region-specific R4: 3.028

Region-enriched R4: 2.007/0.00106

 0.971 - - - 0.971 - - Mlig455_059834 {REF} {Length: 3215} {Pfam: Universal stress protein family [PF00582.28, score=83.8]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [Score=131, Expect=3e-39]} {RNA1509_12684, RNA1509_41734} {RNA1310_5062.1, RNA1509_12684, RNA1509_41734} {RNA1509_12684, RNA1509_41734, RNA815_2234.1}
3. MligTC455_28582 2254 46.96 Mlig455_049108, Mlig455_049135

Neo: -

Age: logFC(26M/2M)=0.245

 C8A 0.969 - - - 0.969 - -

Mlig455_049108 {REF} {Length: 3504} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=31.2]; Thrombospondin type 1 domain [PF00090.21, score=26.1]; Spondin-like TSP1 domain [PF19028.2, score=21.2]; EGF-like domain [PF07974.15, score=19.0]} {Human: ENSG00000157131, C8A, complement C8 alpha chain, [RH, Score=52.4, Expect=4e-06]} {Celegans: WBGene00000083, adt-2, ADAMTS family; ADAMTS-like protease, [Score=51.6, Expect=3e-06]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=50.8, Expect=4e-06]} {RNA1509_2817} {RNA1310_3734.2} {RNA815_687.1}

Mlig455_049135 {REF} {Length: 3567} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=31.2]; Thrombospondin type 1 domain [PF00090.21, score=26.2]; Spondin-like TSP1 domain [PF19028.2, score=21.2]; EGF-like domain [PF07974.15, score=19.0]} {Human: ENSG00000157131, C8A, complement C8 alpha chain, [RH, Score=52.4, Expect=4e-06]} {Celegans: WBGene00000083, adt-2, ADAMTS family; ADAMTS-like protease, [Score=51.6, Expect=3e-06]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=50.8, Expect=4e-06]} {RNA1509_2817} {RNA1310_3734.2} {RNA815_687.1}
4. MligTC455_26713 1834 38.2 Mlig455_062582

Neo: -

Age: Down-Up-Up

Region-enriched R6: 1.015/0.03194

 RHOA 0.961 - - - 0.961 - - Mlig455_062582 {REF} {Length: 1609} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=164.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=78.9]; ADP-ribosylation factor family [PF00025.23, score=30.2]; Signal recognition particle receptor beta subunit [PF09439.12, score=18.7]} {Human: ENSG00000067560, RHOA, ras homolog family member A, [Score=188, Expect=4e-60]; ENSG00000155366, RHOC, ras homolog family member C, [Score=183, Expect=4e-58]; ENSG00000143878, RHOB, ras homolog family member B, [Score=179, Expect=3e-56]} {Mouse: ENSMUSG00000007815, Rhoa, ras homolog family member A, [Score=188, Expect=2e-60]; ENSMUSG00000002233, Rhoc, ras homolog family member C, [Score=183, Expect=3e-58]; ENSMUSG00000036463, 4930544G11Rik, RIKEN cDNA 4930544G11 gene, [Score=181, Expect=3e-57]; ENSMUSG00000054364, Rhob, ras homolog family member B, [Score=179, Expect=2e-56]} {Dmel: FBgn0014020, Rho1, [Score=184, Expect=5e-59]} {Celegans: WBGene00004357, rho-1, Ras-like GTP-binding protein rhoA, [Score=182, Expect=2e-58]} {Smed: dd_Smed_v6_813_0_1, dd_Smed_v6_813_0_1, [Score=186, Expect=7e-60]} {RNA1509_22569, RNA1509_3247} {RNA1310_15563, RNA1509_22569, RNA1509_3247} {RNA1509_22569, RNA1509_3247, RNA815_8100}
5. MligTC455_17624 1111 23.15 Mlig455_050747

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_050747 {REF} {Length: 2954} {Pfam: Family of unknown function (DUF5736) [PF19007.2, score=25.4]} {RNA1509_20748, RNA1509_28412, RNA1509_45653, RNA1509_53167} {RNA1310_9491, RNA1509_20748, RNA1509_28412, RNA1509_45653, RNA1509_53167} {RNA1509_20748, RNA1509_28412, RNA1509_45653, RNA1509_53167, RNA815_3165.1}
6. MligTC455_47438 659 13.73 Mlig455_042832

Neo: -

Age: logFC(26M/2M)=-0.446

 0.951 - - 0.951 - - - Mlig455_042832 {REF} {Length: 2987} {TRANSSPLICED} {Smed: dd_Smed_v6_11834_0_1, dd_Smed_v6_11834_0_1, [RH, Score=171, Expect=2e-46]} {RNA1509_4754} {RNA1310_5693.1} {RNA815_2001}
7. MligTC455_49378 301 6.27 Mlig455_044613

Neo: Irradiation

Age: Up-Down-Down

 SLC2A12 0.95 - - - - - 0.950 Mlig455_044613 {REF} {Length: 3832} {TRANSSPLICED} {Pfam: Sugar (and other) transporter [PF00083.26, score=303.8]; Major Facilitator Superfamily [PF07690.18, score=104.7]} {Human: ENSG00000146411, SLC2A12, solute carrier family 2 member 12, [RH, Score=296, Expect=5e-91]} {Mouse: ENSMUSG00000037490, Slc2a12, solute carrier family 2 (facilitated glucose transporter), member 12, [RH, Score=290, Expect=6e-89]} {Dmel: FBgn0033644, Tret1-2, Trehalose transporter 1-2, [Score=147, Expect=5e-38]} {Celegans: WBGene00010811, hmit-1.3, H(+) MyoInositol coTransporter, [Score=184, Expect=4e-50]} {Smed: dd_Smed_v6_10218_0_2, dd_Smed_v6_10218_0_2, [Score=180, Expect=4e-49]} {RNA1509_20175} {RNA1310_8567, RNA1509_20175} {RNA1509_20175, RNA815_9686}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA