M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24004

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24004 243 5.07 Mlig455_027267

Neo: -

Age: -

 MAP4K5 Mlig455_027267 {REF} {Length: 5946} {Pfam: CNH domain [PF00780.24, score=84.8]; Protein kinase domain [PF00069.27, score=32.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=18.9]} {Human: ENSG00000012983, MAP4K5, mitogen-activated protein kinase kinase kinase kinase 5, [Score=176, Expect=2e-45]} {Mouse: ENSMUSG00000024948, Map4k2, mitogen-activated protein kinase kinase kinase kinase 2, [Score=257, Expect=4e-74]; ENSMUSG00000106850, Map4k2, mitogen-activated protein kinase kinase kinase kinase 2, [Score=257, Expect=4e-74]} {Dmel: FBgn0263395, hppy, happyhour, [Score=144, Expect=3e-35]} {Celegans: WBGene00022603, gck-2, Mitogen-activated protein kinase kinase kinase kinase, [Score=113, Expect=1e-25]} {Smed: dd_Smed_v6_5913_0_2, dd_Smed_v6_5913_0_2, [Score=285, Expect=3e-84]} {RNA1509_23212} {RNA1310_4243.1} {RNA815_7341}

Cumulative graph for MligTC455_24004

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.293 2.752 0.23590 0.87984
RegionR2 1.242 2.752 0.18120 0.53205
RegionR3 0.518 2.752 0.58616 1.00000
RegionR4 1.137 2.752 0.21082 0.49540
RegionR5 1.725 2.752 0.00857 0.05162
RegionR6 -0.295 2.752 0.92912 1.00000
RegionR7 -0.051 2.752 0.87788 1.00000
RegionR8 1.016 2.752 0.45303 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.473 2.752 0.11962 0.84939
RegenerationR2 0.029 2.752 0.94931 1.00000
RegenerationR3 0.458 2.752 0.42358 0.81765
RegenerationR4 -0.302 2.752 0.58643 0.90753
RegenerationR5 -0.131 2.752 0.76798 0.97848
RegenerationR6 1.612 2.752 0.01434 0.14747
RegenerationBL 1.974 2.752 0.00268 0.04372
RegenerationTP -0.101 2.752 0.92345 1.00000


Genes with expression patterns similar to MligTC455_24004

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24004 243 5.07 Mlig455_027267

Neo: -

Age: -

 MAP4K5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_027267 {REF} {Length: 5946} {Pfam: CNH domain [PF00780.24, score=84.8]; Protein kinase domain [PF00069.27, score=32.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=18.9]} {Human: ENSG00000012983, MAP4K5, mitogen-activated protein kinase kinase kinase kinase 5, [Score=176, Expect=2e-45]} {Mouse: ENSMUSG00000024948, Map4k2, mitogen-activated protein kinase kinase kinase kinase 2, [Score=257, Expect=4e-74]; ENSMUSG00000106850, Map4k2, mitogen-activated protein kinase kinase kinase kinase 2, [Score=257, Expect=4e-74]} {Dmel: FBgn0263395, hppy, happyhour, [Score=144, Expect=3e-35]} {Celegans: WBGene00022603, gck-2, Mitogen-activated protein kinase kinase kinase kinase, [Score=113, Expect=1e-25]} {Smed: dd_Smed_v6_5913_0_2, dd_Smed_v6_5913_0_2, [Score=285, Expect=3e-84]} {RNA1509_23212} {RNA1310_4243.1} {RNA815_7341}
2. MligTC455_44167 1076 22.43 Mlig455_059891

Neo: -

Age: logFC(26M/2M)=0.416

Regeneration-upregulated BL: 1.576

Regeneration-enriched BL: 1.576

 SRSF7 1.778 - - - - 0.957 0.821 Mlig455_059891 {REF} {Length: 1013} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=61.9]; RNA recognition motif [PF16367.7, score=23.9]; Zinc knuckle [PF00098.25, score=22.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=19.8]; Zinc knuckle [PF13917.8, score=19.5]} {Human: ENSG00000115875, SRSF7, serine and arginine rich splicing factor 7, [RH, Score=147, Expect=3e-45]} {Mouse: ENSMUSG00000024097, Srsf7, serine/arginine-rich splicing factor 7, [RH, Score=147, Expect=2e-45]} {Dmel: FBgn0028554, x16, x16 splicing factor, [RH, Score=105, Expect=5e-28]} {Celegans: WBGene00013293, Y57G11A.5, [Score=76.6, Expect=2e-18]} {Smed: dd_Smed_v6_2424_0_1, dd_Smed_v6_2424_0_1, [RH, Score=129, Expect=9e-39]} {RNA1509_37237, RNA1509_48999} {RNA1310_34684.1, RNA1509_48999} {RNA1509_48999, RNA815_20639}
3. MligTC455_40073 1892 39.41 Mlig455_008373

Neo: -

Age: -

 TTN 0.966 - - - - 0.966 - Mlig455_008373 {REF} {Length: 7605} {Pfam: Immunoglobulin I-set domain [PF07679.18, score=330.5]; Immunoglobulin domain [PF13927.8, score=243.6]; Immunoglobulin domain [PF00047.27, score=153.0]; Immunoglobulin domain [PF13895.8, score=152.0]; Immunoglobulin V-set domain [PF07686.19, score=61.1]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=44.6]; Penicillin-Binding Protein C-terminus Family [PF06832.14, score=40.1]} {Human: ENSG00000155657, TTN, titin, [Score=191, Expect=5e-48]; ENSG00000143341, HMCN1, hemicentin 1, [Score=188, Expect=4e-47]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=186, Expect=1e-46]} {Dmel: FBgn0052311, zormin, [Score=217, Expect=3e-56]} {Celegans: WBGene00006820, unc-89, Muscle M-line assembly protein unc-89, [Score=218, Expect=1e-56]} {Smed: dd_Smed_v6_13910_0_1, dd_Smed_v6_13910_0_1, [Score=241, Expect=5e-64]} {RNA1509_1719, RNA1509_25163} {RNA1310_593.1, RNA1509_25163} {RNA1509_25163, RNA815_354.1}
4. MligTC455_47040 498 10.38 Mlig455_057196

Neo: -

Age: -

 FRMD4A 0.955 - - - - - 0.955 Mlig455_057196 {REF} {Length: 6173} {TRANSSPLICED} {Pfam: FERM central domain [PF00373.20, score=55.1]; FERM C-terminal PH-like domain [PF09380.12, score=43.3]; FERM N-terminal domain [PF09379.12, score=19.1]} {Human: ENSG00000151474, FRMD4A, FERM domain containing 4A, [RH, Score=219, Expect=5e-58]; ENSG00000114541, FRMD4B, FERM domain containing 4B, [RH, Score=214, Expect=2e-56]} {Mouse: ENSMUSG00000026657, Frmd4a, FERM domain containing 4A, [RH, Score=222, Expect=3e-59]; ENSMUSG00000030064, Frmd4b, FERM domain containing 4B, [RH, Score=218, Expect=5e-58]} {Dmel: FBgn0261985, Ptpmeg, Protein tyrosine phosphatase Meg, [Score=75.5, Expect=2e-13]} {Celegans: WBGene00008555, F07C6.4, [RH, Score=75.1, Expect=2e-13]} {Smed: dd_Smed_v6_2825_0_1, dd_Smed_v6_2825_0_1, [Score=69.3, Expect=9e-12]} {RNA1509_14066} {RNA1310_17543} {RNA815_11394}
5. MligTC455_46830 333 6.93 Mlig455_067032, Mlig455_067076

Neo: -

Age: Down-Down-Up

 0.952 - - - - - 0.952

Mlig455_067032 {REF} {Length: 2359} {RNA1509_23898} {RNA1310_8208.1, RNA1509_23898} {RNA1509_23898, RNA815_686.1}

Mlig455_067076 {REF} {Length: 2574} {RNA1509_23898} {RNA1310_8208.1} {RNA815_686.1}
6. MligTC455_47603 333 6.93 Mlig455_019299

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_019299 {REF} {Length: 2667} {NoTransDecoderORF} {RNA1509_35991} {RNA1310_34204.1} {RNA815_38960}
7. MligTC455_15987 284 5.91 Mlig455_040342

Neo: -

Age: Up-Down-Down

Region-enriched R4: 2.097/0.03996

 ATP2C1 0.951 - - - - - 0.951 Mlig455_040342 {REF} {Length: 7308} {TRANSSPLICED} {Pfam: E1-E2 ATPase [PF00122.22, score=160.2]; Cation transporting ATPase, C-terminus [PF00689.23, score=147.6]; haloacid dehalogenase-like hydrolase [PF00702.28, score=81.6]; Cation transporter/ATPase, N-terminus [PF00690.28, score=74.6]; Cation transport ATPase (P-type) [PF13246.8, score=54.4]} {Human: ENSG00000017260, ATP2C1, ATPase secretory pathway Ca2+ transporting 1, [RH, Score=1004, Expect=0.0]} {Mouse: ENSMUSG00000032570, Atp2c1, ATPase, Ca++-sequestering, [RH, Score=993, Expect=0.0]} {Dmel: FBgn0052451, SPoCk, Secretory Pathway Calcium atpase, [RH, Score=977, Expect=0.0]} {Celegans: WBGene00004063, pmr-1, Calcium-transporting ATPase, [RH, Score=924, Expect=0.0]} {Smed: dd_Smed_v6_6310_0_1, dd_Smed_v6_6310_0_1, [RH, Score=1029, Expect=0.0]} {RNA1509_11179, RNA1509_32887} {RNA1310_3155.1, RNA1509_32887} {RNA1509_32887, RNA815_1139.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA