M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24023

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24023 92 1.91 Mlig455_024532

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.002

 Mlig455_024532 {REF} {Length: 2305} {RNA1509_35097} {RNA1310_39230} {RNA815_29960}

Cumulative graph for MligTC455_24023

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.041 1.903 0.30964 0.95891
RegionR2 -0.226 1.903 0.92392 1.00000
RegionR3 1.323 1.903 0.17150 0.69726
RegionR4 1.174 1.903 0.27398 0.58041
RegionR5 1.235 1.903 0.17072 0.44012
RegionR6 1.152 1.903 0.27806 0.86804
RegionR7 -0.053 1.903 0.88652 1.00000
RegionR8 0.437 1.903 0.74250 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.553 1.903 0.99991 1.00000
RegenerationR2 -0.173 1.903 0.84334 1.00000
RegenerationR3 0.227 1.903 0.76688 0.97038
RegenerationR4 0.341 1.903 0.64939 0.93308
RegenerationR5 0.446 1.903 0.50755 0.86233
RegenerationR6 0.569 1.903 0.48486 0.79511
RegenerationBL 0.543 1.903 0.65478 0.99040
RegenerationTP 1.29 1.903 0.29413 0.73957


Genes with expression patterns similar to MligTC455_24023

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24023 92 1.91 Mlig455_024532

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.002

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_024532 {REF} {Length: 2305} {RNA1509_35097} {RNA1310_39230} {RNA815_29960}
2. MligTC455_30397 118 2.45 Mlig455_029607, Mlig455_061516

Neo: -

Age: Down-Down-Up

 TRAF3 1.817 - - - - 0.950 0.867

Mlig455_029607 {REF} {Length: 1650} {Pfam: TRAF-type zinc finger [PF02176.20, score=39.6]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [Score=88.6, Expect=1e-18]; ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=88.6, Expect=1e-18]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=92.4, Expect=5e-20]; ENSMUSG00000026942, Traf2, TNF receptor-associated factor 2, [Score=89.0, Expect=6e-19]} {Smed: dd_Smed_v6_4392_0_1, dd_Smed_v6_4392_0_1, [Score=88.2, Expect=5e-19]} {RNA1509_16871} {RNA1310_25901} {RNA815_9291}

Mlig455_061516 {REF} {Length: 1461} {Pfam: TRAF-type zinc finger [PF02176.20, score=38.3]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [Score=93.2, Expect=4e-20]; ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=90.5, Expect=2e-19]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=97.1, Expect=1e-21]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [Score=85.5, Expect=3e-18]} {RNA1509_16871} {RNA1310_26518} {RNA815_9291}
3. MligTC455_49359 337 7.02 Mlig455_046774

Neo: -

Age: -

Region-enriched R3: 1.311/0.04231

 LDAH 1.737 0.760 - - - 0.977 - Mlig455_046774 {REF} {Length: 1413} {TRANSSPLICED} {Pfam: Lipid-droplet associated hydrolase [PF10230.11, score=223.6]; Alpha/beta hydrolase family [PF12697.9, score=43.3]; alpha/beta hydrolase fold [PF00561.22, score=37.2]; Serine aminopeptidase, S33 [PF12146.10, score=28.8]; Serine hydrolase [PF06821.15, score=19.5]} {Human: ENSG00000118961, LDAH, lipid droplet associated hydrolase, [RH, Score=176, Expect=9e-53]} {Mouse: ENSMUSG00000037669, Ldah, lipid droplet associated hydrolase, [RH, Score=162, Expect=1e-47]} {Dmel: FBgn0035206, CG9186, [RH, Score=158, Expect=3e-46]} {Celegans: WBGene00008693, F11C1.4, [RH, Score=105, Expect=2e-26]} {Smed: dd_Smed_v6_4305_0_1, dd_Smed_v6_4305_0_1, [RH, Score=164, Expect=3e-49]} {RNA1509_53685} {RNA1310_32458} {RNA815_16124.1}
4. MligTC455_41463 55 1.14 Mlig455_016088

Neo: Int S/G2/M

Age: -

 0.955 - - - - 0.955 - Mlig455_016088 {REF} {Length: 667} {NoTransDecoderORF}
5. MligTC455_21440 164 3.41 Mlig455_007050

Neo: Irradiation

Age: Up-Down-Down

 0.953 - - - - 0.953 - Mlig455_007050 {REF} {Length: 4187} {TRANSSPLICED} {RNA1509_44836, RNA1509_50160, RNA1509_52991} {RNA1310_7692, RNA1509_44836, RNA1509_50160, RNA1509_52991} {RNA1509_44836, RNA1509_50160, RNA1509_52991, RNA815_3581.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA