M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24103

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24103 1786 37.21 Mlig455_002746

Neo: -

Age: -

 ACTR2 Mlig455_002746 {REF} {Length: 2754} {TRANSSPLICED} {Pfam: Actin [PF00022.21, score=317.6]} {Human: ENSG00000138071, ACTR2, ARP2 actin related protein 2 homolog, [RH, Score=674, Expect=0.0]} {Mouse: ENSMUSG00000020152, Actr2, ARP2 actin-related protein 2, [RH, Score=674, Expect=0.0]} {Dmel: FBgn0011742, Arp2, Actin-related protein 2, [RH, Score=646, Expect=0.0]} {Celegans: WBGene00000200, arx-2, Actin-related protein 2, [RH, Score=600, Expect=0.0]} {Smed: dd_Smed_v6_623_0_1, dd_Smed_v6_623_0_1, [RH, Score=634, Expect=0.0]} {RNA1509_14990, RNA1509_2700, RNA1509_44014} {RNA1310_14244, RNA1509_14990, RNA1509_2700, RNA1509_44014} {RNA1509_14990, RNA1509_2700, RNA1509_44014, RNA815_5099}

Cumulative graph for MligTC455_24103

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.126 5.381 0.84843 1.00000
RegionR2 -0.157 5.381 0.63792 0.97643
RegionR3 0.447 5.381 0.09309 0.53725
RegionR4 0.195 5.381 0.54864 0.86969
RegionR5 0.515 5.381 0.03770 0.15265
RegionR6 0 5.381 0.99955 1.00000
RegionR7 -0.651 5.381 0.05907 0.46657
RegionR8 -0.475 5.381 0.22592 0.83562

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.492 5.381 0.21662 0.95327
RegenerationR2 -0.024 5.381 0.93759 1.00000
RegenerationR3 -0.436 5.381 0.18798 0.62328
RegenerationR4 -0.065 5.381 0.84800 1.00000
RegenerationR5 -0.165 5.381 0.59700 0.90896
RegenerationR6 -0.305 5.381 0.38471 0.72506
RegenerationBL 0.044 5.381 0.91174 1.00000
RegenerationTP 0.466 5.381 0.24438 0.69061


Genes with expression patterns similar to MligTC455_24103

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24103 1786 37.21 Mlig455_002746

Neo: -

Age: -

 ACTR2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_002746 {REF} {Length: 2754} {TRANSSPLICED} {Pfam: Actin [PF00022.21, score=317.6]} {Human: ENSG00000138071, ACTR2, ARP2 actin related protein 2 homolog, [RH, Score=674, Expect=0.0]} {Mouse: ENSMUSG00000020152, Actr2, ARP2 actin-related protein 2, [RH, Score=674, Expect=0.0]} {Dmel: FBgn0011742, Arp2, Actin-related protein 2, [RH, Score=646, Expect=0.0]} {Celegans: WBGene00000200, arx-2, Actin-related protein 2, [RH, Score=600, Expect=0.0]} {Smed: dd_Smed_v6_623_0_1, dd_Smed_v6_623_0_1, [RH, Score=634, Expect=0.0]} {RNA1509_14990, RNA1509_2700, RNA1509_44014} {RNA1310_14244, RNA1509_14990, RNA1509_2700, RNA1509_44014} {RNA1509_14990, RNA1509_2700, RNA1509_44014, RNA815_5099}
2. MligTC455_24104 2046 42.62 Mlig455_011492

Neo: -

Age: logFC(26M/2M)=0.270

 ACTR2 5.85 0.975 0.986 0.992 0.965 0.950 0.982 Mlig455_011492 {REF} {Length: 2868} {TRANSSPLICED} {Pfam: Actin [PF00022.21, score=241.8]} {Human: ENSG00000138071, ACTR2, ARP2 actin related protein 2 homolog, [Score=563, Expect=0.0]} {Mouse: ENSMUSG00000020152, Actr2, ARP2 actin-related protein 2, [Score=563, Expect=0.0]} {Dmel: FBgn0011742, Arp2, Actin-related protein 2, [Score=534, Expect=0.0]} {Celegans: WBGene00000200, arx-2, Actin-related protein 2, [Score=495, Expect=4e-176]} {Smed: dd_Smed_v6_623_0_1, dd_Smed_v6_623_0_1, [Score=531, Expect=0.0]} {RNA1509_10539, RNA1509_14779, RNA1509_2700, RNA1509_33886, RNA1509_46288} {RNA1310_14244, RNA1509_10539, RNA1509_14779, RNA1509_33886, RNA1509_46288} {RNA1509_10539, RNA1509_14779, RNA1509_33886, RNA1509_46288, RNA815_5099}
3. MligTC455_53793 1852 38.58 Mlig455_000187

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.268

 ACTR3 1.684 - - 0.729 0.955 - - Mlig455_000187 {REF} {Length: 2996} {TRANSSPLICED} {Pfam: Actin [PF00022.21, score=286.2]} {Human: ENSG00000115091, ACTR3, ARP3 actin related protein 3 homolog, [RH, Score=658, Expect=0.0]; ENSG00000133627, ACTR3B, ARP3 actin related protein 3 homolog B, [RH, Score=643, Expect=0.0]} {Mouse: ENSMUSG00000026341, Actr3, ARP3 actin-related protein 3, [RH, Score=657, Expect=0.0]; ENSMUSG00000056367, Actr3b, ARP3 actin-related protein 3B, [RH, Score=644, Expect=0.0]} {Dmel: FBgn0262716, Arp3, Actin-related protein 3, [RH, Score=640, Expect=0.0]} {Celegans: WBGene00000199, arx-1, Actin-related protein 3, [RH, Score=634, Expect=0.0]} {Smed: dd_Smed_v6_453_0_1, dd_Smed_v6_453_0_1, [RH, Score=617, Expect=0.0]} {RNA1509_13140, RNA1509_16973, RNA1509_32822, RNA1509_44537, RNA1509_5088, RNA1509_5394, RNA1509_54316} {RNA1310_14576.1, RNA1509_13140, RNA1509_16973, RNA1509_32822, RNA1509_44537, RNA1509_5088, RNA1509_5394, RNA1509_54316} {RNA1509_13140, RNA1509_16973, RNA1509_32822, RNA1509_44537, RNA1509_5088, RNA1509_5394, RNA1509_54316, RNA815_5058.1}
4. MligTC455_45645 826 17.21 Mlig455_034656, Mlig455_067611

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.034/0.02138

 ZNF43, ZNF616 0.954 - - - 0.954 - -

Mlig455_034656 {REF} {Length: 375} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=47.9]; C2H2-type zinc finger [PF13894.8, score=32.5]; Zinc-finger double domain [PF13465.8, score=29.7]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=24.4]; C2H2-type zinc finger [PF13912.8, score=23.5]; Zinc-finger of C2H2 type [PF12874.9, score=20.7]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=19.7]} {Human: ENSG00000204611, ZNF616, zinc finger protein 616, [Score=77.8, Expect=1e-17]; ENSG00000167840, ZNF232, zinc finger protein 232, [Score=75.9, Expect=4e-17]; ENSG00000269067, ZNF728, zinc finger protein 728, [Score=75.1, Expect=8e-17]} {Mouse: ENSMUSG00000020420, Zfp607a, zinc finger protein 607A, [Score=80.5, Expect=8e-19]} {Dmel: FBgn0027339, jim, [Score=69.7, Expect=3e-15]} {Celegans: WBGene00012639, fezf-1, FEZ Family zinc finger protein, [Score=65.5, Expect=3e-14]} {Smed: dd_Smed_v6_10039_0_1, dd_Smed_v6_10039_0_1, [Score=63.5, Expect=2e-13]} {RNA1509_23728} {RNA1310_37967} {RNA815_4812}

Mlig455_067611 {REF} {Length: 2566} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=107.3]; C2H2-type zinc finger [PF13894.8, score=90.9]; Zinc-finger double domain [PF13465.8, score=54.8]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=32.3]; C2H2-type zinc finger [PF13912.8, score=30.3]; Zinc-finger of C2H2 type [PF12874.9, score=28.7]} {Human: ENSG00000198521, ZNF43, zinc finger protein 43, [Score=166, Expect=2e-43]; ENSG00000204611, ZNF616, zinc finger protein 616, [Score=163, Expect=2e-42]; ENSG00000196350, ZNF729, zinc finger protein 729, [Score=160, Expect=3e-41]; ENSG00000256294, ZNF225, zinc finger protein 225, [Score=158, Expect=4e-41]} {Mouse: ENSMUSG00000096916, Zfp850, zinc finger protein 850, [Score=185, Expect=9e-51]} {Dmel: FBgn0020309, crol, crooked legs, [Score=122, Expect=4e-29]} {Celegans: WBGene00021931, Y55F3AM.14, [Score=86.7, Expect=9e-18]} {Smed: dd_Smed_v6_8871_0_1, dd_Smed_v6_8871_0_1, [Score=84.3, Expect=6e-17]} {RNA1509_12067, RNA1509_15772, RNA1509_23728} {RNA1310_17539, RNA1509_12067, RNA1509_23728} {RNA1509_12067, RNA1509_23728, RNA815_4812}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA