M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24230

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24230 1190 24.79 Mlig455_000758

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.411/0.00699

 FUBP3 Mlig455_000758 {REF} {Length: 4678} {Pfam: KH domain [PF00013.31, score=201.2]; KH domain [PF07650.19, score=67.1]; KH domain [PF13083.8, score=51.9]; Domain of unknown function (DUF1897) [PF09005.12, score=39.1]} {Human: ENSG00000107164, FUBP3, far upstream element binding protein 3, [RH, Score=236, Expect=6e-69]; ENSG00000162613, FUBP1, far upstream element binding protein 1, [RH, Score=228, Expect=5e-65]; ENSG00000088247, KHSRP, KH-type splicing regulatory protein, [RH, Score=227, Expect=2e-64]} {Mouse: ENSMUSG00000026843, Fubp3, far upstream element (FUSE) binding protein 3, [RH, Score=243, Expect=1e-71]} {Dmel: FBgn0014870, Psi, P-element somatic inhibitor, [RH, Score=160, Expect=8e-41]} {Celegans: WBGene00007534, C12D8.1, [Score=198, Expect=1e-55]} {Smed: dd_Smed_v6_812_0_1, dd_Smed_v6_812_0_1, [RH, Score=183, Expect=3e-50]} {RNA1509_20967, RNA1509_4559, RNA1509_45619, RNA1509_46962, RNA1509_48415, RNA1509_50814, RNA1509_54545} {RNA1310_23545, RNA1509_20967, RNA1509_4559, RNA1509_45619, RNA1509_46962, RNA1509_48415, RNA1509_50814, RNA1509_54545} {RNA1509_20967, RNA1509_4559, RNA1509_45619, RNA1509_46962, RNA1509_48415, RNA1509_50814, RNA1509_54545, RNA815_3597.1}

Cumulative graph for MligTC455_24230

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.558 4.897 0.22249 0.86603
RegionR2 -0.065 4.897 0.88704 1.00000
RegionR3 -0.058 4.897 0.88148 1.00000
RegionR4 1.411 4.897 0.00060 0.00699
RegionR5 0.454 4.897 0.17562 0.44901
RegionR6 0.302 4.897 0.40798 0.97712
RegionR7 0.06 4.897 0.89419 1.00000
RegionR8 -0.546 4.897 0.39408 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.343 4.897 0.40295 1.00000
RegenerationR2 0.205 4.897 0.55473 0.89555
RegenerationR3 0.472 4.897 0.21981 0.65630
RegenerationR4 -0.286 4.897 0.45916 0.84703
RegenerationR5 0.481 4.897 0.17690 0.60671
RegenerationR6 0.876 4.897 0.01654 0.15859
RegenerationBL 0.459 4.897 0.29429 0.65656
RegenerationTP 0.341 4.897 0.49686 0.89848


Genes with expression patterns similar to MligTC455_24230

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24230 1190 24.79 Mlig455_000758

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.411/0.00699

 FUBP3 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_000758 {REF} {Length: 4678} {Pfam: KH domain [PF00013.31, score=201.2]; KH domain [PF07650.19, score=67.1]; KH domain [PF13083.8, score=51.9]; Domain of unknown function (DUF1897) [PF09005.12, score=39.1]} {Human: ENSG00000107164, FUBP3, far upstream element binding protein 3, [RH, Score=236, Expect=6e-69]; ENSG00000162613, FUBP1, far upstream element binding protein 1, [RH, Score=228, Expect=5e-65]; ENSG00000088247, KHSRP, KH-type splicing regulatory protein, [RH, Score=227, Expect=2e-64]} {Mouse: ENSMUSG00000026843, Fubp3, far upstream element (FUSE) binding protein 3, [RH, Score=243, Expect=1e-71]} {Dmel: FBgn0014870, Psi, P-element somatic inhibitor, [RH, Score=160, Expect=8e-41]} {Celegans: WBGene00007534, C12D8.1, [Score=198, Expect=1e-55]} {Smed: dd_Smed_v6_812_0_1, dd_Smed_v6_812_0_1, [RH, Score=183, Expect=3e-50]} {RNA1509_20967, RNA1509_4559, RNA1509_45619, RNA1509_46962, RNA1509_48415, RNA1509_50814, RNA1509_54545} {RNA1310_23545, RNA1509_20967, RNA1509_4559, RNA1509_45619, RNA1509_46962, RNA1509_48415, RNA1509_50814, RNA1509_54545} {RNA1509_20967, RNA1509_4559, RNA1509_45619, RNA1509_46962, RNA1509_48415, RNA1509_50814, RNA1509_54545, RNA815_3597.1}
2. MligTC455_51534 1205 25.1 Mlig455_056636

Neo: -

Age: -

 1.801 - - 0.965 - 0.836 - Mlig455_056636 {REF} {Length: 3390} {TRANSSPLICED} {RNA1509_19738, RNA1509_24799, RNA1509_43268, RNA1509_47767, RNA1509_47941, RNA1509_50043} {RNA1310_480.1, RNA1509_19738, RNA1509_24799, RNA1509_43268, RNA1509_47767, RNA1509_47941, RNA1509_50043} {RNA1509_19738, RNA1509_24799, RNA1509_43268, RNA1509_47767, RNA1509_47941, RNA1509_50043, RNA815_1360.1}
3. MligTC455_41405 844 17.58 Mlig455_003719, Mlig455_003885

Neo: -

Age: -

 PIK3R4 1.779 - - - 0.954 0.825 -

Mlig455_003719 {REF} {Length: 5329} {TRANSSPLICED} {Pfam: HEAT repeat [PF02985.24, score=47.5]; Protein kinase domain [PF00069.27, score=38.7]; WD domain, G-beta repeat [PF00400.34, score=35.1]; HEAT repeats [PF13646.8, score=32.2]; HEAT-like repeat [PF13513.8, score=25.6]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=20.7]; Vacuolar 14 Fab1-binding region [PF12755.9, score=20.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=19.2]} {Human: ENSG00000196455, PIK3R4, phosphoinositide-3-kinase regulatory subunit 4, [Score=598, Expect=0.0]} {Mouse: ENSMUSG00000032571, Pik3r4, phosphoinositide-3-kinase regulatory subunit 4, [Score=595, Expect=0.0]} {Dmel: FBgn0260935, Vps15, Vacuolar protein sorting 15, [Score=513, Expect=1e-158]} {Celegans: WBGene00014151, vps-15, Related to yeast Vacuolar Protein Sorting factor, [Score=234, Expect=3e-62]} {Smed: dd_Smed_v6_6060_0_1, dd_Smed_v6_6060_0_1, [Score=293, Expect=5e-81]} {RNA1509_5482} {RNA1310_999} {RNA815_1679.1}

Mlig455_003885 {REF} {Length: 5336} {TRANSSPLICED} {Pfam: HEAT repeat [PF02985.24, score=48.3]; Protein kinase domain [PF00069.27, score=38.8]; WD domain, G-beta repeat [PF00400.34, score=35.2]; HEAT repeats [PF13646.8, score=32.7]; HEAT-like repeat [PF13513.8, score=24.0]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=20.8]; Vacuolar 14 Fab1-binding region [PF12755.9, score=20.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=19.2]} {Human: ENSG00000196455, PIK3R4, phosphoinositide-3-kinase regulatory subunit 4, [RH, Score=597, Expect=0.0]} {Mouse: ENSMUSG00000032571, Pik3r4, phosphoinositide-3-kinase regulatory subunit 4, [RH, Score=592, Expect=0.0]} {Dmel: FBgn0260935, Vps15, Vacuolar protein sorting 15, [Score=510, Expect=1e-157]} {Celegans: WBGene00014151, vps-15, Related to yeast Vacuolar Protein Sorting factor, [Score=234, Expect=3e-62]} {Smed: dd_Smed_v6_6060_0_1, dd_Smed_v6_6060_0_1, [Score=293, Expect=4e-81]} {RNA1509_5482} {RNA1310_999, RNA1509_5482} {RNA1509_5482, RNA815_1679.1}
4. MligTC455_31406 323 6.72 Mlig455_067268

Neo: -

Age: Down-Up-Down

 1.718 - 0.762 - - 0.956 - Mlig455_067268 {REF} {Length: 4562} {Pfam: Laminin EGF domain [PF00053.26, score=21.2]} {RNA1509_24108, RNA1509_26164} {RNA1310_22595.1, RNA1509_26164} {RNA1509_26164, RNA815_9317}
5. MligTC455_32249 712 14.83 Mlig455_063343

Neo: Irradiation

Age: -

 SIRT1 1.707 - - - 0.960 - 0.747 Mlig455_063343 {REF} {Length: 4216} {Pfam: Sir2 family [PF02146.19, score=203.3]} {Human: ENSG00000096717, SIRT1, sirtuin 1, [RH, Score=397, Expect=1e-126]} {Mouse: ENSMUSG00000020063, Sirt1, sirtuin 1, [RH, Score=394, Expect=2e-126]} {Dmel: FBgn0024291, Sirt1, Sirtuin 1, [RH, Score=381, Expect=4e-120]} {Celegans: WBGene00004800, sir-2.1, NAD-dependent protein deacetylase sir-2.1, [RH, Score=315, Expect=2e-97]} {Smed: dd_Smed_v6_12799_0_1, dd_Smed_v6_12799_0_1, [RH, Score=378, Expect=2e-122]} {RNA1509_7277} {RNA1310_2074.1} {RNA815_382}
6. MligTC455_41406 411 8.56 Mlig455_003675

Neo: -

Age: -

 PIK3R4 1.692 - 0.741 - 0.951 - - Mlig455_003675 {REF} {Length: 5356} {TRANSSPLICED} {Pfam: HEAT repeat [PF02985.24, score=47.6]; Protein kinase domain [PF00069.27, score=47.0]; WD domain, G-beta repeat [PF00400.34, score=34.5]; HEAT repeats [PF13646.8, score=32.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=26.4]; HEAT-like repeat [PF13513.8, score=23.4]; Vacuolar 14 Fab1-binding region [PF12755.9, score=20.7]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=20.6]} {Human: ENSG00000196455, PIK3R4, phosphoinositide-3-kinase regulatory subunit 4, [Score=656, Expect=0.0]} {Mouse: ENSMUSG00000032571, Pik3r4, phosphoinositide-3-kinase regulatory subunit 4, [Score=646, Expect=0.0]} {Dmel: FBgn0260935, Vps15, Vacuolar protein sorting 15, [RH, Score=581, Expect=0.0]} {Celegans: WBGene00014151, vps-15, Related to yeast Vacuolar Protein Sorting factor, [RH, Score=275, Expect=4e-75]} {Smed: dd_Smed_v6_6060_0_1, dd_Smed_v6_6060_0_1, [RH, Score=330, Expect=6e-93]} {RNA1509_5482} {RNA1310_999} {RNA815_1679.1}
7. MligTC455_41775 554 11.54 Mlig455_012339, Mlig455_034963

Neo: -

Age: -

 TMEM104 0.971 - - - 0.971 - -

Mlig455_012339 {REF} {Length: 2743} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=62.4]; Tryptophan/tyrosine permease family [PF03222.15, score=21.7]} {Human: ENSG00000109066, TMEM104, transmembrane protein 104, [RH, Score=390, Expect=4e-130]} {Mouse: ENSMUSG00000045980, Tmem104, transmembrane protein 104, [RH, Score=381, Expect=7e-127]} {Dmel: FBgn0036988, CG5262, [RH, Score=377, Expect=3e-125]} {Celegans: WBGene00007267, C03A3.2, Transmembrane protein 104 homolog, [RH, Score=265, Expect=3e-82]} {Smed: dd_Smed_v6_7100_0_1, dd_Smed_v6_7100_0_1, [RH, Score=358, Expect=4e-118]} {RNA1509_26217} {RNA1310_16504} {RNA815_6695}

Mlig455_034963 {REF} {Length: 2758} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=60.5]; Tryptophan/tyrosine permease family [PF03222.15, score=20.9]} {Human: ENSG00000109066, TMEM104, transmembrane protein 104, [RH, Score=389, Expect=1e-129]} {Mouse: ENSMUSG00000045980, Tmem104, transmembrane protein 104, [RH, Score=378, Expect=1e-125]} {Dmel: FBgn0036988, CG5262, [RH, Score=374, Expect=3e-124]} {Celegans: WBGene00007267, C03A3.2, Transmembrane protein 104 homolog, [RH, Score=261, Expect=7e-81]} {Smed: dd_Smed_v6_7100_0_1, dd_Smed_v6_7100_0_1, [RH, Score=355, Expect=1e-116]} {RNA1509_26217, RNA1509_36871} {RNA1310_16504, RNA1509_26217, RNA1509_36871} {RNA1509_26217, RNA1509_36871, RNA815_6695}
8. MligTC455_36445 869 18.1 Mlig455_008598

Neo: Int S/G2/M

Age: -

 CCAR1 0.966 - - - 0.966 - - Mlig455_008598 {REF} {Length: 4422} {TRANSSPLICED} {Pfam: DBC1 [PF14443.8, score=118.3]; LAIKA domain [PF19256.1, score=84.4]; BURAN domain [PF19257.1, score=73.5]; S1-like [PF14444.8, score=54.7]; SAP domain [PF02037.29, score=41.5]} {Human: ENSG00000060339, CCAR1, cell division cycle and apoptosis regulator 1, [RH, Score=297, Expect=1e-87]} {Mouse: ENSMUSG00000020074, Ccar1, cell division cycle and apoptosis regulator 1, [RH, Score=301, Expect=1e-86]} {Celegans: WBGene00003085, ccar-1, CCAR1 homolog, [Score=225, Expect=1e-60]} {Smed: dd_Smed_v6_1608_0_1, dd_Smed_v6_1608_0_1, [Score=317, Expect=1e-94]} {RNA1509_27703, RNA1509_5646} {RNA1310_2640.1, RNA1509_27703, RNA1509_5646} {RNA1509_27703, RNA1509_5646, RNA815_7093}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA