Data search


search
Exact
Search

Results for MligTC455_24264

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24264 359 7.48 Mlig455_023846, Mlig455_046531

Neo: -

Age: -

Mlig455_023846 {REF} {Length: 722} {NoTransDecoderORF} {RNA1509_48720} {RNA1310_8026} {RNA815_3300.1}

Mlig455_046531 {REF} {Length: 436} {NoTransDecoderORF} {RNA1509_56940} {RNA1310_8026} {RNA815_3300.1}

Cumulative graph for MligTC455_24264

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.543 3.255 0.10038 0.66891
RegionR2 0.677 3.255 0.27477 0.65980
RegionR3 -0.43 3.255 0.41569 0.94099
RegionR4 -0.656 3.255 0.26630 0.57094
RegionR5 0.793 3.255 0.05360 0.19710
RegionR6 -0.355 3.255 0.52286 1.00000
RegionR7 0.963 3.255 0.08896 0.57176
RegionR8 1.549 3.255 0.01284 0.21826

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.374 3.255 0.59534 1.00000
RegenerationR2 0.005 3.255 0.99206 1.00000
RegenerationR3 0.915 3.255 0.11255 0.52629
RegenerationR4 0.023 3.255 0.96585 1.00000
RegenerationR5 -0.373 3.255 0.44790 0.82958
RegenerationR6 1.413 3.255 0.01560 0.15383
RegenerationBL -0.338 3.255 0.64999 0.98652
RegenerationTP 0.524 3.255 0.37612 0.81213


Genes with expression patterns similar to MligTC455_24264

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24264 359 7.48 Mlig455_023846, Mlig455_046531

Neo: -

Age: -

6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_023846 {REF} {Length: 722} {NoTransDecoderORF} {RNA1509_48720} {RNA1310_8026} {RNA815_3300.1}

Mlig455_046531 {REF} {Length: 436} {NoTransDecoderORF} {RNA1509_56940} {RNA1310_8026} {RNA815_3300.1}
2. MligTC455_24265 275 5.73 Mlig455_046658

Neo: -

Age: Up-Down-Down

5.595 0.994 0.981 0.910 0.937 0.879 0.894 Mlig455_046658 {REF} {Length: 4365} {RNA1509_44930} {RNA1310_21062.1, RNA1509_44930} {RNA1509_44930, RNA815_17193.1}
3. MligTC455_21036 7843 163.39 Mlig455_057458

Neo: Int S/G2/M

Age: -

0.96 - - - - 0.960 - Mlig455_057458 {REF} {Length: 320} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_712} {RNA1310_95473} {RNA815_49240}
4. MligTC455_20782 91 1.9 Mlig455_066519

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-1.321

Region-enriched R8: 5.950/0.00576
Region-enriched R7: 5.330/0.01039

0.955 - - - - 0.955 - Mlig455_066519 {REF} {Length: 3710} {RNA1509_53671} {RNA1310_35957.1} {RNA815_13121.1}
5. MligTC455_01806 27 0.56 Mlig455_049878, Mlig455_057129

Neo: -

Age: -

WBP2NL 0.954 - - - - 0.954 -

Mlig455_049878 {REF} {Length: 2090} {Dmel: FBgn0033862, CG6209, [Score=69.7, Expect=4e-12]} {RNA1509_19375} {RNA1310_25242} {RNA815_29048}

Mlig455_057129 {REF} {Length: 2879} {Human: ENSG00000183066, WBP2NL, WBP2 N-terminal like, [Score=56.2, Expect=6e-08]} {RNA1509_19375} {RNA1310_25242} {RNA815_60428}
6. MligTC455_18853 111 2.31 Mlig455_003980

Neo: -

Age: Down-Down-Down

Region-enriched R5: 2.394/0.01639

MRPL45 0.954 - - - - 0.954 - Mlig455_003980 {REF} {Length: 1097} {TRANSSPLICED} {Human: ENSG00000278845, MRPL45, mitochondrial ribosomal protein L45, [RH, Score=62.0, Expect=2e-10]; ENSG00000277936, MRPL45, mitochondrial ribosomal protein L45, [RH, Score=62.0, Expect=2e-10]} {Mouse: ENSMUSG00000018882, Mrpl45, mitochondrial ribosomal protein L45, [RH, Score=57.8, Expect=4e-09]} {Dmel: FBgn0263863, mRpL45, mitochondrial ribosomal protein L45, [RH, Score=73.9, Expect=1e-14]} {Celegans: WBGene00022493, mrpl-45, Probable 39S ribosomal protein L45, mitochondrial, [RH, Score=75.1, Expect=3e-15]} {Smed: dd_Smed_v6_2740_0_1, dd_Smed_v6_2740_0_1, [RH, Score=64.3, Expect=8e-12]} {RNA1509_6788} {RNA1310_30839} {RNA815_14208}
7. MligTC455_22307 116 2.42 Mlig455_068765

Neo: Int S/G2/M

Age: Down-Up-Up

Region-enriched R2: 8.515/0.00025
Region-enriched R6: 5.329/0.02181

CDK7 0.954 - - - - 0.954 - Mlig455_068765 {REF} {Length: 2368} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=230.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=93.0]; Haspin like kinase domain [PF12330.10, score=18.3]} {Human: ENSG00000134058, CDK7, cyclin dependent kinase 7, [RH, Score=364, Expect=6e-125]; ENSG00000277273, CDK7, cyclin dependent kinase 7, [RH, Score=364, Expect=6e-125]} {Mouse: ENSMUSG00000069089, Cdk7, cyclin-dependent kinase 7, [RH, Score=357, Expect=5e-122]} {Dmel: FBgn0263237, Cdk7, Cyclin-dependent kinase 7, [RH, Score=359, Expect=3e-123]} {Celegans: WBGene00000408, cdk-7, Cyclin-dependent kinase 7, [RH, Score=337, Expect=5e-115]} {Smed: dd_Smed_v6_8614_0_1, dd_Smed_v6_8614_0_1, [RH, Score=333, Expect=2e-113]} {RNA1509_19653} {RNA1310_23923} {RNA815_10258}
8. MligTC455_24719 157 3.27 Mlig455_068767

Neo: -

Age: -

Region-enriched R2: 5.202/0.00031

COG7 0.95 - - - - 0.950 - Mlig455_068767 {REF} {Length: 4952} {Pfam: Golgi complex component 7 (COG7) [PF10191.11, score=301.0]} {Human: ENSG00000168434, COG7, component of oligomeric golgi complex 7, [RH, Score=218, Expect=8e-60]} {Mouse: ENSMUSG00000034951, Cog7, component of oligomeric golgi complex 7, [RH, Score=212, Expect=6e-58]} {Dmel: FBgn0051040, Cog7, [RH, Score=140, Expect=5e-34]} {Smed: dd_Smed_v6_3661_0_1, dd_Smed_v6_3661_0_1, [RH, Score=237, Expect=4e-67]} {RNA1509_16994} {RNA1310_8228.1} {RNA815_3568}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA