Data search
Results for MligTC455_24293
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_24293 | 164 | 3.42 | Mlig455_038038 | Neo: - Age: - |
Mlig455_038038 {REF} {Length: 3262} {RNA1509_37251} {RNA1310_36602.1} {RNA815_25998} |
Cumulative graph for MligTC455_24293
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -5.544 | 2.384 | 0.22493 | 0.86874 | |
| RegionR2 | 1.405 | 2.384 | 0.22050 | 0.58923 | |
| RegionR3 | 0.665 | 2.384 | 0.51532 | 1.00000 | |
| RegionR4 | 0.22 | 2.384 | 0.77796 | 1.00000 | |
| RegionR5 | -0.744 | 2.384 | 0.97680 | 1.00000 | |
| RegionR6 | 1.224 | 2.384 | 0.21187 | 0.78958 | |
| RegionR7 | 2.067 | 2.384 | 0.03414 | 0.35164 | |
| RegionR8 | 0.705 | 2.384 | 0.60197 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 0.989 | 2.384 | 0.99990 | 1.00000 | |
| RegenerationR2 | 0.778 | 2.384 | 0.29537 | 0.73771 | |
| RegenerationR3 | 0.663 | 2.384 | 0.43242 | 0.82258 | |
| RegenerationR4 | 0.755 | 2.384 | 0.39364 | 0.80973 | |
| RegenerationR5 | 1.723 | 2.384 | 0.04383 | 0.34332 | |
| RegenerationR6 | 0.452 | 2.384 | 0.59429 | 0.86603 | |
| RegenerationBL | -0.257 | 2.384 | 0.81456 | 1.00000 | |
| RegenerationTP | 0.781 | 2.384 | 0.42061 | 0.84484 |
Genes with expression patterns similar to MligTC455_24293
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_24293 | 164 | 3.42 | Mlig455_038038 | Neo: - Age: - |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_038038 {REF} {Length: 3262} {RNA1509_37251} {RNA1310_36602.1} {RNA815_25998} | |
| 2. | MligTC455_47095 | 264 | 5.49 | Mlig455_034015 | Neo: - Age: logFC(26M/2M)=0.440 Region-enriched R2: 3.525/0.00629 Regeneration-upregulated R5: 2.857 Regeneration-enriched R5: 2.857 |
SSUH2 | 1.719 | - | - | 0.768 | - | 0.951 | - | Mlig455_034015 {REF} {Length: 2246} {Pfam: DnaJ central domain [PF00684.21, score=23.4]} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=110, Expect=9e-27]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=87.4, Expect=9e-19]} {RNA1509_22065} {RNA1310_14684, RNA1509_22065} {RNA1509_22065, RNA815_5263.1} |
| 3. | MligTC455_51195 | 51 | 1.06 | Mlig455_020957 | Neo: - Age: Down-Down-Up |
CDK5R1 | 0.977 | - | - | - | - | 0.977 | - | Mlig455_020957 {REF} {Length: 1912} {Pfam: Cyclin-dependent kinase 5 activator protein [PF03261.17, score=249.3]} {Human: ENSG00000176749, CDK5R1, cyclin dependent kinase 5 regulatory subunit 1, [RH, Score=191, Expect=5e-57]} {Mouse: ENSMUSG00000048895, Cdk5r1, cyclin-dependent kinase 5, regulatory subunit 1 (p35), [RH, Score=191, Expect=4e-57]} {Dmel: FBgn0027491, Cdk5alpha, Cdk5 activator-like protein, [RH, Score=199, Expect=2e-58]} {Celegans: WBGene00011955, cdka-1, Cyclin-dependent kinase 5 activator 1, [RH, Score=176, Expect=5e-51]} {Smed: dd_Smed_v6_13788_0_1, dd_Smed_v6_13788_0_1, [RH, Score=216, Expect=9e-67]} {RNA1509_28436} {RNA1310_14097} {RNA815_13436} |
| 4. | MligTC455_28141 | 69 | 1.45 | Mlig455_011472, Mlig455_069148 | Neo: - |
0.97 | - | - | - | - | 0.970 | - | Mlig455_011472 {REF} {Length: 3013} {TRANSSPLICED} {Smed: dd_Smed_v6_17025_0_1, dd_Smed_v6_17025_0_1, [Score=43.9, Expect=6e-06]} {RNA1509_45809} {RNA1310_850} {RNA815_1208.1} Mlig455_069148 {REF} {Length: 2970} {TRANSSPLICED} {Smed: dd_Smed_v6_17025_0_1, dd_Smed_v6_17025_0_1, [Score=43.9, Expect=6e-06]} {RNA1509_45809} {RNA1310_850} {RNA815_1208.1} |
|
| 5. | MligTC455_40226 | 43 | 0.89 | Mlig455_010646, Mlig455_010651 | Neo: - Age: - |
GRIK2 | 0.963 | - | - | - | - | 0.963 | - | Mlig455_010646 {REF} {Length: 1094} {Pfam: Ligand-gated ion channel [PF00060.28, score=72.3]; LIM domain [PF00412.24, score=31.8]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=137, Expect=3e-32]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=135, Expect=8e-32]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=133, Expect=6e-31]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=136, Expect=4e-32]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=135, Expect=7e-32]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=134, Expect=2e-31]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=278, Expect=1e-79]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=254, Expect=2e-74]} {Smed: dd_Smed_v6_5330_0_1, dd_Smed_v6_5330_0_1, [Score=196, Expect=5e-51]} {RNA1310_59687} {RNA815_48326} Mlig455_010651 {REF} {Length: 3614} {Pfam: Ligand-gated ion channel [PF00060.28, score=72.3]; LIM domain [PF00412.24, score=31.8]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=137, Expect=3e-32]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=135, Expect=8e-32]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=133, Expect=6e-31]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=136, Expect=4e-32]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=135, Expect=7e-32]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=134, Expect=2e-31]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=278, Expect=1e-79]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=254, Expect=2e-74]} {Smed: dd_Smed_v6_5330_0_1, dd_Smed_v6_5330_0_1, [Score=196, Expect=5e-51]} {RNA1509_35609} {RNA1310_6947.1} {RNA815_20684} |
| 6. | MligTC455_19610 | 189 | 3.95 | Mlig455_029340 | Neo: - Age: - |
0.956 | - | - | 0.956 | - | - | - | Mlig455_029340 {REF} {Length: 5127} {RNA1509_27135, RNA1509_29384, RNA1509_40464} {RNA1310_1522.1, RNA1509_27135, RNA1509_29384, RNA1509_40464} {RNA1509_27135, RNA1509_29384, RNA1509_40464, RNA815_3707} | |
| 7. | MligTC455_50100 | 86 | 1.8 | Mlig455_031032 | Neo: - Age: - Region-enriched R8: 4.201/0.00579 |
SLC4A11 | 0.956 | - | - | - | - | 0.956 | - | Mlig455_031032 {REF} {Length: 3497} {Pfam: HCO3- transporter family [PF00955.23, score=526.7]; Band 3 cytoplasmic domain [PF07565.15, score=23.8]; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 [PF00359.24, score=22.0]} {Human: ENSG00000088836, SLC4A11, solute carrier family 4 member 11, [RH, Score=547, Expect=3e-180]} {Mouse: ENSMUSG00000074796, Slc4a11, solute carrier family 4, sodium bicarbonate transporter-like, member 11, [RH, Score=533, Expect=2e-175]} {Dmel: FBgn0259111, Ndae1, Na[+]-driven anion exchanger 1, [Score=242, Expect=3e-66]} {Celegans: WBGene00019018, abts-3, Anion transporter ABTS-3; Anion/Bicarbonate TranSporter family, [RH, Score=680, Expect=0.0]} {Smed: dd_Smed_v6_16577_0_1, dd_Smed_v6_16577_0_1, [RH, Score=904, Expect=0.0]} {RNA1509_55902} {RNA1310_18543} {RNA815_14015} |
| 8. | MligTC455_24634 | 18 | 0.38 | Mlig455_025695 | Neo: - Age: - |
0.955 | - | - | - | - | 0.955 | - | Mlig455_025695 {REF} {Length: 3439} {NoTransDecoderORF} {RNA1509_22778} {RNA1310_40636} {RNA815_8157} | |
| 9. | MligTC455_40227 | 12 | 0.26 | Mlig455_010749 | Neo: - Age: - |
GRIK2 | 0.952 | - | - | - | - | 0.952 | - | Mlig455_010749 {REF} {Length: 2895} {Pfam: Ligand-gated ion channel [PF00060.28, score=133.1]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=95.2]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=57.0]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=306, Expect=6e-90]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=305, Expect=4e-89]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=303, Expect=1e-88]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=306, Expect=3e-90]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=303, Expect=2e-89]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=302, Expect=3e-88]} {Dmel: FBgn0039927, CG11155, [Score=291, Expect=2e-84]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=262, Expect=8e-75]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=336, Expect=1e-100]} {RNA1310_47182} {RNA815_48326} |
| 10. | MligTC455_37188 | 31 | 0.65 | Mlig455_000345 | Neo: - Age: - |
TRAF5 | 0.95 | - | - | - | - | 0.950 | - | Mlig455_000345 {REF} {Length: 892} {Human: ENSG00000082512, TRAF5, TNF receptor associated factor 5, [Score=67.8, Expect=2e-12]; ENSG00000076604, TRAF4, TNF receptor associated factor 4, [Score=65.5, Expect=8e-12]} {Mouse: ENSMUSG00000111385, Traf5, TNF receptor-associated factor 5, [Score=75.1, Expect=8e-16]; ENSMUSG00000026637, Traf5, TNF receptor-associated factor 5, [Score=75.1, Expect=8e-16]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=65.1, Expect=6e-12]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=92.0, Expect=3e-21]} {Smed: dd_Smed_v6_13517_0_1, dd_Smed_v6_13517_0_1, [Score=108, Expect=5e-27]} |
Berezikov Lab - 2020-2021 © ERIBA