M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24309

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24309 62 1.30 Mlig455_014252

Neo: -

Age: -

Region-enriched R2: 4.275/0.03235

 SLC16A12 Mlig455_014252 {REF} {Length: 2350} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=126.8]} {Human: ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [RH, Score=186, Expect=2e-52]} {Mouse: ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [RH, Score=187, Expect=3e-53]} {Dmel: FBgn0033095, CG3409, [Score=137, Expect=2e-34]} {Celegans: WBGene00021227, mct-1, MonoCarboxylate Transporter family, [Score=118, Expect=2e-28]} {Smed: dd_Smed_v6_9402_0_1, dd_Smed_v6_9402_0_1, [Score=123, Expect=3e-30]} {RNA1509_33089} {RNA1310_9979, RNA1509_33089} {RNA1509_33089, RNA815_15847}

Cumulative graph for MligTC455_24309

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.019 1.343 0.93555 1.00000
RegionR2 4.275 1.343 0.00179 0.03235
RegionR3 1.395 1.343 0.24638 0.78956
RegionR4 -0.13 1.343 0.74938 1.00000
RegionR5 0.939 1.343 0.34960 0.69873
RegionR6 1.134 1.343 0.36844 0.94954
RegionR7 -3.179 1.343 1.00000 1.00000
RegionR8 -3.414 1.343 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.828 1.343 0.68327 1.00000
RegenerationR2 0.502 1.343 0.46599 0.85574
RegenerationR3 1.769 1.343 0.11256 0.52629
RegenerationR4 2.095 1.343 0.05815 0.38697
RegenerationR5 1.638 1.343 0.08299 0.44577
RegenerationR6 2.377 1.343 0.04728 0.27212
RegenerationBL 4.492 1.343 0.02471 0.17283
RegenerationTP 4.644 1.343 0.11075 0.51198


Genes with expression patterns similar to MligTC455_24309

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24309 62 1.3 Mlig455_014252

Neo: -

Age: -

Region-enriched R2: 4.275/0.03235

 SLC16A12 5 1.000 1.000 1.000 - 1.000 1.000 Mlig455_014252 {REF} {Length: 2350} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=126.8]} {Human: ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [RH, Score=186, Expect=2e-52]} {Mouse: ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [RH, Score=187, Expect=3e-53]} {Dmel: FBgn0033095, CG3409, [Score=137, Expect=2e-34]} {Celegans: WBGene00021227, mct-1, MonoCarboxylate Transporter family, [Score=118, Expect=2e-28]} {Smed: dd_Smed_v6_9402_0_1, dd_Smed_v6_9402_0_1, [Score=123, Expect=3e-30]} {RNA1509_33089} {RNA1310_9979, RNA1509_33089} {RNA1509_33089, RNA815_15847}
2. MligTC455_52974 208 4.33 Mlig455_006731

Neo: -

Age: logFC(26M/2M)=-0.440

 2.567 0.844 0.959 - - - 0.764 Mlig455_006731 {REF} {Length: 2281} {TRANSSPLICED} {Pfam: Gamma-glutamyl cyclotransferase, AIG2-like [PF06094.14, score=41.4]; AIG2-like family [PF13772.8, score=36.0]} {RNA1509_12874} {RNA1310_10210.1} {RNA815_7283}
3. MligTC455_50288 118 2.47 Mlig455_059182

Neo: -

Age: Up-Down-Down

 2.447 0.958 - 0.741 - - 0.748 Mlig455_059182 {REF} {Length: 3438} {Pfam: Sushi repeat (SCR repeat) [PF00084.22, score=42.6]; Lectin C-type domain [PF00059.23, score=23.6]} {Smed: dd_Smed_v6_41498_0_1, dd_Smed_v6_41498_0_1, [RH, Score=189, Expect=3e-53]} {RNA1509_45950, RNA1509_54781} {RNA1310_10757.1, RNA1509_45950, RNA1509_54781} {RNA1509_45950, RNA1509_54781, RNA815_5369}
4. MligTC455_37314 28 0.59 Mlig455_020645

Neo: -

Age: -

 CALM2 1.789 - - 0.957 - - 0.832 Mlig455_020645 {REF} {Length: 1006} {Pfam: EF-hand domain pair [PF13499.8, score=22.0]; EF-hand domain [PF14658.8, score=19.6]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=65.9, Expect=3e-13]; ENSG00000198668, CALM1, calmodulin 1, [Score=65.9, Expect=3e-13]; ENSG00000160014, CALM3, calmodulin 3, [Score=65.9, Expect=3e-13]; ENSG00000178363, CALML3, calmodulin like 3, [Score=65.1, Expect=6e-13]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=66.6, Expect=3e-13]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=65.9, Expect=2e-13]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=65.9, Expect=2e-13]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=67.8, Expect=3e-14]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=67.8, Expect=2e-14]} {Smed: dd_Smed_v6_5491_0_1, dd_Smed_v6_5491_0_1, [Score=109, Expect=5e-30]} {RNA1310_33365} {RNA815_27013}
5. MligTC455_32908 97 2.02 Mlig455_064081

Neo: -

Age: -

 1.776 - 0.960 0.816 - - - Mlig455_064081 {REF} {Length: 578} {NoTransDecoderORF} {RNA1310_91407} {RNA815_49815}
6. MligTC455_21755 70 1.47 Mlig455_021213

Neo: -

Age: -

 1.765 0.960 - - - - 0.805 Mlig455_021213 {REF} {Length: 4215} {Pfam: F5/8 type C domain [PF00754.27, score=55.5]} {RNA1509_2515} {RNA1310_33166} {RNA815_14716}
7. MligTC455_26562 51 1.05 Mlig455_003821

Neo: -

Age: -

Region-enriched R4: 4.788/0.04787

 1.748 - - 0.790 - - 0.958 Mlig455_003821 {REF} {Length: 3329} {NoTransDecoderORF} {RNA1509_310} {RNA1310_3669} {RNA815_20255}
8. MligTC455_35019 168 3.49 Mlig455_046994

Neo: -

Age: -

 ASIC4 1.748 0.967 - - - - 0.781 Mlig455_046994 {REF} {Length: 4001} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=101.4]} {Human: ENSG00000072182, ASIC4, acid sensing ion channel subunit family member 4, [Score=76.3, Expect=1e-13]} {Mouse: ENSMUSG00000033007, Asic4, acid-sensing (proton-gated) ion channel family member 4, [Score=76.3, Expect=8e-14]; ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=72.8, Expect=8e-13]} {Smed: dd_Smed_v6_15233_0_1, dd_Smed_v6_15233_0_1, [RH, Score=103, Expect=1e-22]} {RNA1509_33816} {RNA1310_3176, RNA1509_33816} {RNA1509_33816, RNA815_12439}
9. MligTC455_33854 41 0.85 Mlig455_031601

Neo: -

Age: -

Region-enriched R2: 5.730/0.00808

 1.735 0.951 - - - - 0.784 Mlig455_031601 {REF} {Length: 1072} {RNA1310_42312} {RNA815_56269}
10. MligTC455_16908 161 3.35 Mlig455_046916

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.397

Region-enriched R2: 2.938/0.02849

 SLC17A6 1.732 0.951 - - - - 0.781 Mlig455_046916 {REF} {Length: 3198} {Pfam: Major Facilitator Superfamily [PF07690.18, score=172.0]; Uncharacterised MFS-type transporter YbfB [PF06779.16, score=19.6]} {Human: ENSG00000091664, SLC17A6, solute carrier family 17 member 6, [RH, Score=548, Expect=0.0]; ENSG00000179520, SLC17A8, solute carrier family 17 member 8, [RH, Score=542, Expect=0.0]; ENSG00000104888, SLC17A7, solute carrier family 17 member 7, [RH, Score=536, Expect=0.0]} {Mouse: ENSMUSG00000019935, Slc17a8, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8, [RH, Score=551, Expect=0.0]; ENSMUSG00000030500, Slc17a6, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6, [RH, Score=547, Expect=0.0]; ENSMUSG00000070570, Slc17a7, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7, [RH, Score=543, Expect=0.0]} {Dmel: FBgn0031424, VGlut, Vesicular glutamate transporter, [Score=482, Expect=6e-163]} {Celegans: WBGene00001135, eat-4, Probable vesicular glutamate transporter eat-4, [RH, Score=479, Expect=7e-163]} {Smed: dd_Smed_v6_10192_0_1, dd_Smed_v6_10192_0_1, [RH, Score=591, Expect=0.0]} {RNA1509_38152} {RNA1310_23072, RNA1509_38152} {RNA1509_38152, RNA815_14894}
11. MligTC455_30160 55 1.15 Mlig455_035128

Neo: -

Age: -

Region-enriched R2: 5.270/0.01686

 TCF7L1 1.69 0.970 - - - - 0.720 Mlig455_035128 {REF} {Length: 2946} {Pfam: HMG (high mobility group) box [PF00505.21, score=79.2]; HMG-box domain [PF09011.12, score=34.5]} {Human: ENSG00000152284, TCF7L1, transcription factor 7 like 1, [RH, Score=161, Expect=1e-42]; ENSG00000138795, LEF1, lymphoid enhancer binding factor 1, [RH, Score=158, Expect=7e-43]; ENSG00000081059, TCF7, transcription factor 7, [RH, Score=156, Expect=2e-41]} {Mouse: ENSMUSG00000055799, Tcf7l1, transcription factor 7 like 1 (T cell specific, HMG box), [RH, Score=161, Expect=8e-43]; ENSMUSG00000027985, Lef1, lymphoid enhancer binding factor 1, [RH, Score=158, Expect=9e-44]; ENSMUSG00000000782, Tcf7, transcription factor 7, T cell specific, [RH, Score=155, Expect=1e-42]} {Dmel: FBgn0085432, pan, pangolin, [RH, Score=156, Expect=1e-40]} {Celegans: WBGene00004077, pop-1, [Score=108, Expect=2e-25]} {Smed: dd_Smed_v6_34144_0_1, dd_Smed_v6_34144_0_1, [RH, Score=166, Expect=6e-48]} {RNA1509_46571} {RNA1310_11181} {RNA815_36690}
12. MligTC455_49929 76 1.59 Mlig455_001249, Mlig455_001253

Neo: -

Age: Down-Up-Up

 0.967 0.967 - - - - -

Mlig455_001249 {REF} {Length: 984} {RNA1310_33799.1} {RNA815_47109}

Mlig455_001253 {REF} {Length: 1260} {RNA1310_33799.1} {RNA815_45980}
13. MligTC455_51717 52 1.08 Mlig455_001880

Neo: -

Age: Down-Up-Up

 0.963 - 0.963 - - - - Mlig455_001880 {REF} {Length: 1251} {TRANSSPLICED} {RNA1310_62660} {RNA815_37836}
14. MligTC455_19041 54 1.12 Mlig455_030662

Neo: -

Age: -

Region-enriched R2: 9.337/0.00002
Region-enriched R3: 6.044/0.00168

 CAV1 0.962 0.962 - - - - - Mlig455_030662 {REF} {Length: 940} {Pfam: Caveolin [PF01146.19, score=117.8]} {Human: ENSG00000105974, CAV1, caveolin 1, [Score=98.2, Expect=1e-26]} {Mouse: ENSMUSG00000007655, Cav1, caveolin 1, caveolae protein, [Score=99.4, Expect=3e-27]} {Celegans: WBGene00000301, cav-1, Caveolin-1, [Score=73.9, Expect=6e-17]} {Smed: dd_Smed_v6_6535_0_1, dd_Smed_v6_6535_0_1, [RH, Score=133, Expect=6e-41]} {RNA1509_53325} {RNA1310_97043} {RNA815_32565}
15. MligTC455_41854 80 1.67 Mlig455_034307, Mlig455_067305, Mlig455_067321

Neo: -

Age: -

 0.962 0.962 - - - - -

Mlig455_034307 {REF} {Length: 459} {RNA815_51696.1}

Mlig455_067305 {REF} {Length: 466} {RNA815_51696.1}

Mlig455_067321 {REF} {Length: 95} {TRANSSPLICED} {NoTransDecoderORF} {RNA815_51696.1}
16. MligTC455_38891 74 1.54 Mlig455_064866

Neo: -

Age: -

 0.961 - 0.961 - - - - Mlig455_064866 {REF} {Length: 5908} {TRANSSPLICED} {Pfam: CD20-like family [PF04103.17, score=31.4]} {RNA1509_32088, RNA1509_47982} {RNA1310_22607, RNA1509_47982} {RNA1509_47982, RNA815_13989.1}
17. MligTC455_23646 47 0.98 Mlig455_001205, Mlig455_066753

Neo: -

Age: -

Region-enriched R2: 8.582/0.00166
Region-enriched R3: 5.875/0.02918

 KLHL8 0.96 0.960 - - - - -

Mlig455_001205 {REF} {Length: 2326} {Pfam: Kelch motif [PF01344.27, score=190.6]; Kelch motif [PF13964.8, score=104.0]; Kelch motif [PF07646.17, score=62.8]; Galactose oxidase, central domain [PF13418.8, score=56.3]; Galactose oxidase, central domain [PF13415.8, score=49.4]} {Human: ENSG00000145332, KLHL8, kelch like family member 8, [Score=278, Expect=2e-87]} {Mouse: ENSMUSG00000029312, Klhl8, kelch-like 8, [Score=278, Expect=4e-87]} {Dmel: FBgn0040230, dbo, diablo, [Score=202, Expect=3e-58]} {Celegans: WBGene00020952, kel-8, Kelch-like protein 8, [Score=268, Expect=3e-84]} {Smed: dd_Smed_v6_6164_0_1, dd_Smed_v6_6164_0_1, [Score=190, Expect=8e-54]} {RNA1310_76174} {RNA815_60106}

Mlig455_066753 {REF} {Length: 3003} {Pfam: Kelch motif [PF01344.27, score=183.2]; Kelch motif [PF13964.8, score=99.5]; BTB And C-terminal Kelch [PF07707.17, score=62.0]; Kelch motif [PF07646.17, score=55.8]; Galactose oxidase, central domain [PF13418.8, score=51.5]; BTB/POZ domain [PF00651.33, score=39.3]; Galactose oxidase, central domain [PF13415.8, score=36.3]} {Human: ENSG00000145332, KLHL8, kelch like family member 8, [Score=375, Expect=4e-121]} {Mouse: ENSMUSG00000029312, Klhl8, kelch-like 8, [Score=372, Expect=4e-120]} {Dmel: FBgn0040230, dbo, diablo, [Score=266, Expect=1e-79]} {Celegans: WBGene00020952, kel-8, Kelch-like protein 8, [Score=334, Expect=8e-105]} {Smed: dd_Smed_v6_6164_0_1, dd_Smed_v6_6164_0_1, [Score=265, Expect=1e-79]} {RNA1310_76174} {RNA815_60106}
18. MligTC455_38957 86 1.79 Mlig455_007298

Neo: -

Age: -

 0.958 - 0.958 - - - - Mlig455_007298 {REF} {Length: 2554} {Pfam: EF-hand domain [PF13405.8, score=33.1]; EF-hand domain pair [PF13499.8, score=27.9]; EF hand [PF00036.34, score=22.3]} {Mouse: ENSMUSG00000030321, Efcab12, EF-hand calcium binding domain 12, [RH, Score=66.2, Expect=1e-10]} {Smed: dd_Smed_v6_10608_0_1, dd_Smed_v6_10608_0_1, [RH, Score=54.7, Expect=1e-08]} {RNA1509_20232} {RNA1310_17116} {RNA815_14272}
19. MligTC455_45898 87 1.82 Mlig455_058293

Neo: -

Age: -

 CUX2 0.955 0.955 - - - - - Mlig455_058293 {REF} {Length: 4328} {Pfam: CUT domain [PF02376.17, score=197.2]; Homeodomain [PF00046.31, score=53.8]; Homeobox KN domain [PF05920.13, score=29.1]} {Human: ENSG00000111249, CUX2, cut like homeobox 2, [Score=144, Expect=3e-34]} {Mouse: ENSMUSG00000042589, Cux2, cut-like homeobox 2, [Score=148, Expect=1e-35]} {Dmel: FBgn0004198, ct, cut, [Score=123, Expect=4e-28]} {Celegans: WBGene00000464, ceh-44, Homeobox protein cut-like ceh-44, [RH, Score=142, Expect=4e-34]} {Smed: dd_Smed_v6_13843_0_1, dd_Smed_v6_13843_0_1, [Score=125, Expect=6e-29]} {RNA1310_11859} {RNA815_40841}
20. MligTC455_13738 250 5.21 Mlig455_048156

Neo: -

Age: logFC(26M/2M)=3.366

Regeneration-upregulated R2: 3.348

Regeneration-enriched R2: 3.348

 0.953 0.953 - - - - - Mlig455_048156 {REF} {Length: 832} {RNA1310_88526} {RNA815_59579}
21. MligTC455_45943 66 1.38 Mlig455_012164

Neo: -

Age: Up-Up-Down

 NPR2 0.953 0.953 - - - - - Mlig455_012164 {REF} {Length: 4580} {Pfam: Adenylate and Guanylate cyclase catalytic domain [PF00211.22, score=225.3]; Receptor family ligand binding region [PF01094.30, score=169.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=126.7]; Protein kinase domain [PF00069.27, score=114.0]; Heme NO binding associated [PF07701.16, score=19.2]} {Human: ENSG00000159899, NPR2, natriuretic peptide receptor 2, [RH, Score=791, Expect=0.0]} {Mouse: ENSMUSG00000028469, Npr2, natriuretic peptide receptor 2, [RH, Score=629, Expect=0.0]} {Dmel: FBgn0051183, CG31183, [RH, Score=826, Expect=0.0]} {Celegans: WBGene00020131, gcy-28, Receptor-type guanylate cyclase gcy-28, [RH, Score=600, Expect=0.0]} {Smed: dd_Smed_v6_14331_0_1, dd_Smed_v6_14331_0_1, [RH, Score=955, Expect=0.0]} {RNA1509_42903} {RNA1310_5627} {RNA815_1811}
22. MligTC455_06514 12 0.26 Mlig455_001637

Neo: -

Age: -

 0.95 0.950 - - - - - Mlig455_001637 {REF} {Length: 928} {NoTransDecoderORF} {RNA1310_113137}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA