M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24459

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24459 194 4.04 Mlig455_054148

Neo: Int S/G2/M

Age: -

Region-enriched R5: 3.063/0.00003

 Mlig455_054148 {REF} {Length: 6656} {RNA1509_22961, RNA1509_44755} {RNA1310_66185, RNA1509_22961} {RNA1509_22961, RNA815_31052}

Cumulative graph for MligTC455_24459

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.7 2.485 0.69356 1.00000
RegionR2 -1.927 2.485 0.11702 0.42370
RegionR3 -0.072 2.485 0.95905 1.00000
RegionR4 0.334 2.485 0.66511 0.96339
RegionR5 3.063 2.485 0.00000 0.00003
RegionR6 -0.528 2.485 0.60900 1.00000
RegionR7 0.816 2.485 0.41173 1.00000
RegionR8 -2.385 2.485 0.26300 0.88514

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.036 2.485 0.98839 1.00000
RegenerationR2 1.785 2.485 0.05295 0.37930
RegenerationR3 0.425 2.485 0.62126 0.91710
RegenerationR4 0.473 2.485 0.56360 0.89863
RegenerationR5 -1.536 2.485 0.02934 0.28827
RegenerationR6 1.45 2.485 0.11308 0.41435
RegenerationBL 1.843 2.485 0.09125 0.35443
RegenerationTP 1.413 2.485 0.31304 0.75754


Genes with expression patterns similar to MligTC455_24459

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24459 194 4.04 Mlig455_054148

Neo: Int S/G2/M

Age: -

Region-enriched R5: 3.063/0.00003

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_054148 {REF} {Length: 6656} {RNA1509_22961, RNA1509_44755} {RNA1310_66185, RNA1509_22961} {RNA1509_22961, RNA815_31052}
2. MligTC455_28386 78 1.62 Mlig455_068823

Neo: -

Age: logFC(26M/2M)=1.011

Region-enriched R5: 3.694/0.00017

 0.952 0.952 - - - - - Mlig455_068823 {REF} {Length: 572} {Pfam: WSC domain [PF01822.21, score=38.2]} {RNA1509_32111} {RNA1310_40575} {RNA815_7836.1}
3. MligTC455_12909 49 1.01 Mlig455_023925

Neo: -

Age: Down-Up-Down

Region-enriched R4: 5.857/0.01219
Region-enriched R5: 3.540/0.03087

 PPP3R1 0.95 - - - 0.950 - - Mlig455_023925 {REF} {Length: 1630} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=68.1]; EF-hand domain pair [PF13499.8, score=67.2]; EF hand [PF13202.8, score=56.2]; EF-hand domain [PF13405.8, score=55.1]; EF-hand domain pair [PF13833.8, score=34.2]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=19.1]} {Human: ENSG00000221823, PPP3R1, protein phosphatase 3 regulatory subunit B, alpha, [Score=235, Expect=4e-80]} {Mouse: ENSMUSG00000033953, Ppp3r1, protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I), [Score=235, Expect=3e-80]} {Dmel: FBgn0015614, CanB2, Calcineurin B2, [Score=223, Expect=7e-76]} {Celegans: WBGene00000554, cnb-1, Protein phosphatase 2B regulatory subunit cnb-1, [Score=221, Expect=6e-75]} {Smed: dd_Smed_v6_5589_0_1, dd_Smed_v6_5589_0_1, [Score=236, Expect=2e-81]} {RNA1509_37367} {RNA1310_41038} {RNA815_36547}
4. MligTC455_49346 277 5.78 Mlig455_041719

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.435

 LDLRAP1 0.95 - - - 0.950 - - Mlig455_041719 {REF} {Length: 1688} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=33.3]; Phosphotyrosine interaction domain (PTB/PID) [PF14719.8, score=29.1]} {Human: ENSG00000157978, LDLRAP1, low density lipoprotein receptor adaptor protein 1, [Score=74.7, Expect=2e-15]} {Mouse: ENSMUSG00000037295, Ldlrap1, low density lipoprotein receptor adaptor protein 1, [Score=77.8, Expect=1e-16]} {Smed: dd_Smed_v6_7972_0_2, dd_Smed_v6_7972_0_2, [RH, Score=84.0, Expect=9e-20]} {RNA1509_18234, RNA1509_59250} {RNA1310_45234, RNA1509_59250} {RNA1509_59250, RNA815_22351}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA