M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24644

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24644 87 1.81 Mlig455_043355

Neo: -

Age: -

 MTIF2 Mlig455_043355 {REF} {Length: 2036} {Pfam: Translation-initiation factor 2 [PF11987.10, score=68.5]} {Human: ENSG00000085760, MTIF2, mitochondrial translational initiation factor 2, [Score=176, Expect=1e-47]} {Mouse: ENSMUSG00000020459, Mtif2, mitochondrial translational initiation factor 2, [Score=187, Expect=8e-52]} {Dmel: FBgn0039588, mIF2, mitochondrial translation initiation factor 2, [Score=157, Expect=1e-41]} {Celegans: WBGene00009771, F46B6.6, [Score=136, Expect=2e-34]} {Smed: dd_Smed_v6_5295_0_1, dd_Smed_v6_5295_0_1, [Score=121, Expect=2e-29]} {RNA1509_13709, RNA1509_54088} {RNA1310_5842, RNA1509_54088} {RNA1509_54088, RNA815_39249}

Cumulative graph for MligTC455_24644

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -7.584 1.951 0.04916 0.52668
RegionR2 2.772 1.951 0.04514 0.25021
RegionR3 0.994 1.951 0.35003 0.88530
RegionR4 -2.054 1.951 0.99983 1.00000
RegionR5 1.066 1.951 0.39685 0.75348
RegionR6 0.883 1.951 0.45262 1.00000
RegionR7 2.353 1.951 0.04722 0.41802
RegionR8 1.57 1.951 0.34991 0.98342

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.659 1.951 0.99981 1.00000
RegenerationR2 0.403 1.951 0.78597 0.98526
RegenerationR3 2.37 1.951 0.03231 0.32057
RegenerationR4 1.785 1.951 0.12255 0.53218
RegenerationR5 1.6 1.951 0.07334 0.42440
RegenerationR6 -1.164 1.951 0.38052 0.72170
RegenerationBL 1.741 1.951 0.28651 0.64815
RegenerationTP 1.569 1.951 0.26794 0.71509


Genes with expression patterns similar to MligTC455_24644

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24644 87 1.81 Mlig455_043355

Neo: -

Age: -

 MTIF2 4 1.000 1.000 - - 1.000 1.000 Mlig455_043355 {REF} {Length: 2036} {Pfam: Translation-initiation factor 2 [PF11987.10, score=68.5]} {Human: ENSG00000085760, MTIF2, mitochondrial translational initiation factor 2, [Score=176, Expect=1e-47]} {Mouse: ENSMUSG00000020459, Mtif2, mitochondrial translational initiation factor 2, [Score=187, Expect=8e-52]} {Dmel: FBgn0039588, mIF2, mitochondrial translation initiation factor 2, [Score=157, Expect=1e-41]} {Celegans: WBGene00009771, F46B6.6, [Score=136, Expect=2e-34]} {Smed: dd_Smed_v6_5295_0_1, dd_Smed_v6_5295_0_1, [Score=121, Expect=2e-29]} {RNA1509_13709, RNA1509_54088} {RNA1310_5842, RNA1509_54088} {RNA1509_54088, RNA815_39249}
2. MligTC455_31383 243 5.07 Mlig455_063894

Neo: -

Age: -

Region-enriched R5: 1.866/0.03029

 GARS 0.979 0.979 - - - - - Mlig455_063894 {REF} {Length: 2269} {Pfam: Anticodon binding domain [PF03129.22, score=52.2]; tRNA synthetase class II core domain (G, H, P, S and T) [PF00587.27, score=42.5]} {Human: ENSG00000106105, GARS, glycyl-tRNA synthetase, [Score=430, Expect=7e-141]} {Mouse: ENSMUSG00000029777, Gars, glycyl-tRNA synthetase, [Score=432, Expect=6e-142]} {Dmel: FBgn0027088, GlyRS, Glycyl-tRNA synthetase, [Score=450, Expect=9e-150]} {Celegans: WBGene00001744, gars-1, Glycine--tRNA ligase, [Score=432, Expect=4e-143]} {Smed: dd_Smed_v6_3958_0_1, dd_Smed_v6_3958_0_1, [Score=372, Expect=2e-120]} {RNA1509_13579} {RNA1310_564} {RNA815_3927}
3. MligTC455_27726 509 10.61 Mlig455_060397

Neo: -

Age: -

Region-enriched R5: 1.223/0.00400

 SCYL3 0.974 0.974 - - - - - Mlig455_060397 {REF} {Length: 3049} {Pfam: Protein kinase domain [PF00069.27, score=29.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=27.1]} {Human: ENSG00000000457, SCYL3, SCY1 like pseudokinase 3, [RH, Score=178, Expect=3e-47]} {Mouse: ENSMUSG00000026584, Scyl3, SCY1-like 3 (S. cerevisiae), [RH, Score=183, Expect=2e-48]} {Dmel: FBgn0260990, yata, [Score=96.7, Expect=3e-20]} {Celegans: WBGene00012337, W07G4.3, [Score=91.3, Expect=9e-19]} {Smed: dd_Smed_v6_3470_0_1, dd_Smed_v6_3470_0_1, [Score=95.1, Expect=4e-20]} {RNA1509_28121, RNA1509_48983} {RNA1310_5680.1, RNA1509_48983} {RNA1509_48983, RNA815_8357}
4. MligTC455_01343 92 1.93 Mlig455_010560, Mlig455_010561

Neo: -

Age: -

 0.973 0.973 - - - - -

Mlig455_010560 {REF} {Length: 293} {Celegans: WBGene00044074, mltn-5, MLt-TeN (Mlt-10) related, [Score=56.6, Expect=9e-11]} {RNA1509_31312} {RNA1310_42761} {RNA815_54768}

Mlig455_010561 {REF} {Length: 869} {Celegans: WBGene00015646, mlt-10, [Score=48.9, Expect=1e-08]} {RNA1509_31312} {RNA1310_119354} {RNA815_54768}
5. MligTC455_13397 328 6.83 Mlig455_005290

Neo: -

Age: -

Region-enriched R5: 1.444/0.00333

 EXTL3 0.973 0.973 - - - - - Mlig455_005290 {REF} {Length: 4329} {TRANSSPLICED} {Pfam: Glycosyl transferase family 64 domain [PF09258.12, score=287.7]; Exostosin family [PF03016.17, score=37.3]} {Human: ENSG00000012232, EXTL3, exostosin like glycosyltransferase 3, [RH, Score=481, Expect=4e-156]} {Mouse: ENSMUSG00000021978, Extl3, exostoses (multiple)-like 3, [RH, Score=478, Expect=4e-155]} {Dmel: FBgn0027535, botv, brother of tout-velu, [RH, Score=479, Expect=9e-155]} {Celegans: WBGene00004361, rib-2, Exostosin-2 homolog, [RH, Score=399, Expect=5e-126]} {Smed: dd_Smed_v6_14625_0_1, dd_Smed_v6_14625_0_1, [RH, Score=441, Expect=4e-142]} {RNA1509_24376} {RNA1310_18189, RNA1509_24376} {RNA1509_24376, RNA815_24950}
6. MligTC455_00831 642 13.37 Mlig455_016457, Mlig455_016523

Neo: -

Age: logFC(26M/2M)=0.506

 LGR5 0.97 0.970 - - - - -

Mlig455_016457 {REF} {Length: 4347} {Pfam: Leucine rich repeat [PF13855.8, score=86.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=45.8]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=40.5]} {Human: ENSG00000139292, LGR5, leucine rich repeat containing G protein-coupled receptor 5, [Score=58.5, Expect=7e-08]; ENSG00000145147, SLIT2, slit guidance ligand 2, [Score=57.0, Expect=2e-07]} {Mouse: ENSMUSG00000020140, Lgr5, leucine rich repeat containing G protein coupled receptor 5, [Score=59.7, Expect=2e-08]} {Dmel: FBgn0267435, chp, chaoptin, [Score=67.0, Expect=8e-11]} {Celegans: WBGene00006593, tol-1, TOLl (Drosophila) family, [Score=55.8, Expect=2e-07]} {RNA1509_8817} {RNA1310_2409} {RNA815_590.1}

Mlig455_016523 {REF} {Length: 3360} {Pfam: Leucine rich repeat [PF13855.8, score=41.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=39.1]} {RNA1509_8817} {RNA1310_22547} {RNA815_590.1}
7. MligTC455_47233 135 2.8 Mlig455_050486

Neo: -

Age: -

 0.97 0.970 - - - - - Mlig455_050486 {REF} {Length: 3564} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=40.8]; Prokaryotic RING finger family 4 [PF14447.8, score=20.8]; Ring finger domain [PF13639.8, score=20.7]} {RNA1509_49389, RNA1509_50445} {RNA1310_32377.1, RNA1509_49389, RNA1509_50445} {RNA1509_49389, RNA1509_50445, RNA815_33010}
8. MligTC455_22642 448 9.32 Mlig455_059180

Neo: Neoblast, stringent

Age: -

Region-enriched R5: 2.279/0.04360

 DCTD 0.967 0.967 - - - - - Mlig455_059180 {REF} {Length: 3732} {TRANSSPLICED} {Pfam: Cytidine and deoxycytidylate deaminase zinc-binding region [PF00383.25, score=97.2]; MafB19-like deaminase [PF14437.8, score=59.1]} {Human: ENSG00000129187, DCTD, dCMP deaminase, [RH, Score=230, Expect=2e-77]} {Mouse: ENSMUSG00000031562, Dctd, dCMP deaminase, [RH, Score=237, Expect=2e-80]} {Dmel: FBgn0036959, CG6951, [RH, Score=199, Expect=2e-65]} {Celegans: WBGene00014034, ZK643.2, Probable deoxycytidylate deaminase, [RH, Score=135, Expect=3e-40]} {Smed: dd_Smed_v6_6803_0_1, dd_Smed_v6_6803_0_1, [RH, Score=200, Expect=4e-66]} {RNA1509_46940, RNA1509_56786} {RNA1310_47977, RNA1509_46940, RNA1509_56786} {RNA1509_46940, RNA1509_56786, RNA815_14734.2}
9. MligTC455_40622 163 3.4 Mlig455_054859

Neo: -

Age: Down-Up-Up

 0.967 0.967 - - - - - Mlig455_054859 {REF} {Length: 1588} {RNA1509_40075} {RNA1310_2479.1} {RNA815_23995}
10. MligTC455_16462 248 5.17 Mlig455_058597

Neo: -

Age: Down-Down-Up

Region-enriched R4: 2.200/0.02502
Region-enriched R3: 2.087/0.02407
Region-enriched R5: 1.741/0.03183

 0.964 - - - - - 0.964 Mlig455_058597 {REF} {Length: 2499} {RNA1509_26769, RNA1509_36389, RNA1509_43355} {RNA1310_44087, RNA1509_26769, RNA1509_36389, RNA1509_43355} {RNA1509_26769, RNA1509_36389, RNA1509_43355, RNA815_22536}
11. MligTC455_28391 197 4.1 Mlig455_041238

Neo: -

Age: -

 0.964 0.964 - - - - - Mlig455_041238 {REF} {Length: 2639} {TRANSSPLICED} {RNA1509_35221} {RNA1310_41838} {RNA815_24207}
12. MligTC455_33518 74 1.54 Mlig455_034081

Neo: -

Age: -

 SLC5A9 0.964 - - - - - 0.964 Mlig455_034081 {REF} {Length: 2394} {Pfam: Sodium:solute symporter family [PF00474.19, score=357.0]} {Human: ENSG00000117834, SLC5A9, solute carrier family 5 member 9, [RH, Score=545, Expect=0.0]} {Mouse: ENSMUSG00000028544, Slc5a9, solute carrier family 5 (sodium/glucose cotransporter), member 9, [Score=556, Expect=0.0]} {Dmel: FBgn0039872, salt, salty dog, [Score=85.1, Expect=8e-17]} {Smed: dd_Smed_v6_6663_0_1, dd_Smed_v6_6663_0_1, [Score=506, Expect=7e-172]} {RNA1509_13834} {RNA1310_9462} {RNA815_5775}
13. MligTC455_45249 10 0.21 Mlig455_011889, Mlig455_013144

Neo: -

Age: -

 PRKG1 0.962 0.962 - - - - -

Mlig455_011889 {REF} {Length: 1460} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=72.4]} {Human: ENSG00000185532, PRKG1, protein kinase cGMP-dependent 1, [Score=53.9, Expect=2e-07]} {Mouse: ENSMUSG00000052920, Prkg1, protein kinase, cGMP-dependent, type I, [Score=51.6, Expect=2e-06]; ENSMUSG00000025855, Prkar1b, protein kinase, cAMP dependent regulatory, type I beta, [Score=51.6, Expect=1e-06]} {Dmel: FBgn0259243, Pka-R1, Protein kinase, cAMP-dependent, regulatory subunit type 1, [Score=51.6, Expect=7e-07]} {Celegans: WBGene00002190, kin-2, cAMP-dependent protein kinase regulatory subunit, [Score=50.4, Expect=2e-06]} {Smed: dd_Smed_v6_19613_0_1, dd_Smed_v6_19613_0_1, [RH, Score=284, Expect=9e-92]} {RNA1310_62873}

Mlig455_013144 {REF} {Length: 2277} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=73.3]} {Human: ENSG00000185532, PRKG1, protein kinase cGMP-dependent 1, [Score=52.0, Expect=7e-07]; ENSG00000188191, PRKAR1B, protein kinase cAMP-dependent type I regulatory subunit beta, [Score=50.1, Expect=3e-06]} {Mouse: ENSMUSG00000025855, Prkar1b, protein kinase, cAMP dependent regulatory, type I beta, [Score=50.1, Expect=2e-06]; ENSMUSG00000052920, Prkg1, protein kinase, cGMP-dependent, type I, [Score=50.1, Expect=3e-06]} {Dmel: FBgn0259243, Pka-R1, Protein kinase, cAMP-dependent, regulatory subunit type 1, [Score=50.8, Expect=7e-07]} {Celegans: WBGene00002190, kin-2, cAMP-dependent protein kinase regulatory subunit, [Score=49.3, Expect=2e-06]} {Smed: dd_Smed_v6_19613_0_1, dd_Smed_v6_19613_0_1, [Score=227, Expect=2e-71]} {RNA1310_62873}
14. MligTC455_13396 351 7.3 Mlig455_004986

Neo: -

Age: -

Region-enriched R5: 1.511/0.00084

 0.961 0.961 - - - - - Mlig455_004986 {REF} {Length: 799} {NoTransDecoderORF} {RNA1509_31555, RNA1509_50636} {RNA1310_44877, RNA1509_31555} {RNA1509_31555, RNA815_24950}
15. MligTC455_18749 1246 25.96 Mlig455_001711

Neo: -

Age: Down-Up-Down

 WASF2 0.961 0.961 - - - - - Mlig455_001711 {REF} {Length: 4388} {TRANSSPLICED} {Pfam: WH2 motif [PF02205.22, score=20.1]} {Human: ENSG00000158195, WASF2, WAS protein family member 2, [Score=81.6, Expect=7e-16]} {Mouse: ENSMUSG00000028868, Wasf2, WAS protein family, member 2, [Score=74.7, Expect=8e-14]} {Celegans: WBGene00006958, wve-1, WAVE (Actin cytoskeleton modulator) homolog, [Score=58.2, Expect=8e-09]} {Smed: dd_Smed_v6_3189_0_1, dd_Smed_v6_3189_0_1, [Score=68.9, Expect=2e-12]} {RNA1509_12864} {RNA1310_29646} {RNA815_12255}
16. MligTC455_42588 697 14.53 Mlig455_059848

Neo: -

Age: -

 BRMS1L 0.959 0.959 - - - - - Mlig455_059848 {REF} {Length: 1457} {TRANSSPLICED} {Pfam: Sds3-like [PF08598.13, score=45.0]} {Human: ENSG00000100916, BRMS1L, BRMS1 like transcriptional repressor, [RH, Score=102, Expect=3e-25]} {Mouse: ENSMUSG00000012076, Brms1l, breast cancer metastasis-suppressor 1-like, [RH, Score=102, Expect=2e-25]} {RNA1509_13906} {RNA1310_20862, RNA1509_13906} {RNA1509_13906, RNA815_8588}
17. MligTC455_18750 1324 27.58 Mlig455_001646

Neo: -

Age: -

 WASF2 0.958 0.958 - - - - - Mlig455_001646 {REF} {Length: 3917} {TRANSSPLICED} {Pfam: WH2 motif [PF02205.22, score=21.1]} {Human: ENSG00000158195, WASF2, WAS protein family member 2, [RH, Score=132, Expect=1e-32]} {Mouse: ENSMUSG00000028868, Wasf2, WAS protein family, member 2, [RH, Score=122, Expect=3e-29]} {Dmel: FBgn0041781, SCAR, [RH, Score=109, Expect=1e-24]} {Smed: dd_Smed_v6_3189_0_1, dd_Smed_v6_3189_0_1, [RH, Score=113, Expect=1e-26]} {RNA1509_28838, RNA1509_57063} {RNA1310_21692.1, RNA1509_28838, RNA1509_57063} {RNA1509_28838, RNA1509_57063, RNA815_12255}
18. MligTC455_33460 155 3.24 Mlig455_043671, Mlig455_043782, Mlig455_052607

Neo: -

Age: Up-Down-Down

Region-enriched R2: 2.867/0.03359

 0.958 0.958 - - - - -

Mlig455_043671 {REF} {Length: 2416} {Pfam: SAP domain [PF02037.29, score=40.8]} {RNA1509_8096} {RNA1310_1771} {RNA815_801}

Mlig455_043782 {REF} {Length: 514} {Pfam: SAP domain [PF02037.29, score=37.7]} {RNA1509_8096} {RNA1310_1771} {RNA815_801}

Mlig455_052607 {REF} {Length: 497} {Pfam: SAP domain [PF02037.29, score=40.8]; SAP domain-containing new25 [PF18953.2, score=19.6]} {RNA1509_8096} {RNA1310_1771} {RNA815_801}
19. MligTC455_44242 791 16.49 Mlig455_055969

Neo: -

Age: -

Region-enriched R4: 2.144/0.00043
Region-enriched R5: 1.096/0.02532

 ECH1 0.956 0.956 - - - - - Mlig455_055969 {REF} {Length: 1128} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=141.3]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=91.8]} {Human: ENSG00000104823, ECH1, enoyl-CoA hydratase 1, [RH, Score=270, Expect=6e-89]; ENSG00000282853, ECH1, enoyl-CoA hydratase 1, [RH, Score=270, Expect=6e-89]} {Mouse: ENSMUSG00000053898, Ech1, enoyl coenzyme A hydratase 1, peroxisomal, [RH, Score=284, Expect=7e-95]} {Dmel: FBgn0031092, CG9577, [RH, Score=278, Expect=1e-92]} {Celegans: WBGene00019022, F58A6.1, [RH, Score=243, Expect=2e-79]} {Smed: dd_Smed_v6_2181_0_1, dd_Smed_v6_2181_0_1, [RH, Score=276, Expect=2e-92]} {RNA1509_12995, RNA1509_7707} {RNA1310_10485, RNA1509_12995, RNA1509_7707} {RNA1509_12995, RNA1509_7707, RNA815_14750}
20. MligTC455_19520 711 14.82 Mlig455_018524

Neo: -

Age: logFC(26M/2M)=-0.243

 PTDSS2 0.955 - - - - - 0.955 Mlig455_018524 {REF} {Length: 3134} {TRANSSPLICED} {Pfam: Phosphatidyl serine synthase [PF03034.17, score=388.0]} {Human: ENSG00000174915, PTDSS2, phosphatidylserine synthase 2, [Score=480, Expect=7e-167]} {Mouse: ENSMUSG00000025495, Ptdss2, phosphatidylserine synthase 2, [Score=483, Expect=3e-168]} {Dmel: FBgn0037010, CG4825, [Score=269, Expect=1e-84]} {Celegans: WBGene00012095, pssy-2, PhosphatidylSerine SYnthase, [Score=275, Expect=3e-86]} {Smed: dd_Smed_v6_7678_0_1, dd_Smed_v6_7678_0_1, [RH, Score=577, Expect=0.0]} {RNA1509_10186, RNA1509_15443, RNA1509_19161, RNA1509_25562, RNA1509_26982} {RNA1310_5581, RNA1509_10186, RNA1509_15443, RNA1509_19161, RNA1509_25562, RNA1509_26982} {RNA1509_10186, RNA1509_15443, RNA1509_19161, RNA1509_25562, RNA1509_26982, RNA815_3642.1}
21. MligTC455_40528 141 2.93 Mlig455_021965

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.492

 0.955 - - - - - 0.955 Mlig455_021965 {REF} {Length: 3282} {Pfam: Indigoidine synthase A like protein [PF04227.14, score=358.1]; pfkB family carbohydrate kinase [PF00294.26, score=85.6]} {Dmel: FBgn0031265, CG2794, [RH, Score=337, Expect=2e-105]} {Celegans: WBGene00020765, T24C12.3, [RH, Score=286, Expect=1e-86]} {Smed: dd_Smed_v6_5339_0_1, dd_Smed_v6_5339_0_1, [RH, Score=306, Expect=1e-93]} {RNA1509_58327} {RNA1310_13708, RNA1509_58327} {RNA1509_58327, RNA815_13307}
22. MligTC455_09997 72 1.5 Mlig455_065845

Neo: -

Age: Up-Down-Down

 0.952 - - - - - 0.952 Mlig455_065845 {REF} {Length: 1218} {NoTransDecoderORF} {RNA1509_56298} {RNA1310_42236} {RNA815_50969}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA