M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24920

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24920 46 0.95 Mlig455_055084

Neo: -

Age: -

 Mlig455_055084 {REF} {Length: 5523} {Pfam: Vinculin family [PF01044.21, score=43.1]} {Mouse: ENSMUSG00000079051, Gm14025, predicted gene 14025, [RH, Score=57.0, Expect=2e-07]} {RNA1509_36794} {RNA1310_3132.1, RNA1509_36794} {RNA1509_36794, RNA815_9224}

Cumulative graph for MligTC455_24920

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.982 1.428 0.99960 1.00000
RegionR2 3.535 1.428 0.04839 0.26138
RegionR3 1.403 1.428 0.33357 0.87174
RegionR4 0.075 1.428 0.76521 1.00000
RegionR5 -0.228 1.428 0.83810 1.00000
RegionR6 0.5 1.428 0.65539 1.00000
RegionR7 2.079 1.428 0.20625 0.81726
RegionR8 -3.381 1.428 0.99973 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.831 1.428 0.99987 1.00000
RegenerationR2 0.75 1.428 0.47045 0.85805
RegenerationR3 1.318 1.428 0.33773 0.76217
RegenerationR4 1.308 1.428 0.42838 0.82985
RegenerationR5 1.657 1.428 0.24946 0.68302
RegenerationR6 2.502 1.428 0.08811 0.37082
RegenerationBL 2.213 1.428 0.36109 0.72991
RegenerationTP -1.166 1.428 0.99972 1.00000


Genes with expression patterns similar to MligTC455_24920

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24920 46 0.95 Mlig455_055084

Neo: -

Age: -

 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_055084 {REF} {Length: 5523} {Pfam: Vinculin family [PF01044.21, score=43.1]} {Mouse: ENSMUSG00000079051, Gm14025, predicted gene 14025, [RH, Score=57.0, Expect=2e-07]} {RNA1509_36794} {RNA1310_3132.1, RNA1509_36794} {RNA1509_36794, RNA815_9224}
2. MligTC455_24921 169 3.53 Mlig455_055130, Mlig455_064022, Mlig455_068594

Neo: -

Age: -

 4.321 0.762 0.726 - 0.904 0.983 0.946

Mlig455_055130 {REF} {Length: 5554} {Mouse: ENSMUSG00000079051, Gm14025, predicted gene 14025, [Score=58.9, Expect=6e-08]} {RNA1509_36794, RNA1509_45848} {RNA1310_3132.1, RNA1509_45848} {RNA1509_45848, RNA815_9224}

Mlig455_064022 {REF} {Length: 5554} {Mouse: ENSMUSG00000079051, Gm14025, predicted gene 14025, [Score=58.5, Expect=7e-08]} {RNA1509_36794} {RNA1310_3132.1} {RNA815_9224}

Mlig455_068594 {REF} {Length: 4836} {Pfam: Vinculin family [PF01044.21, score=20.7]} {RNA1509_36794} {RNA1310_3132.1} {RNA815_9224}
3. MligTC455_13940 33 0.68 Mlig455_009937, Mlig455_035115

Neo: -

Age: -

Region-enriched R4: 7.698/0.00432

 ASIC1 0.976 - - - - 0.976 -

Mlig455_009937 {REF} {Length: 2745} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=86.2]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=51.6, Expect=1e-06]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=51.2, Expect=8e-07]; ENSMUSG00000020704, Asic2, acid-sensing (proton-gated) ion channel 2, [Score=48.9, Expect=4e-06]} {Celegans: WBGene00003174, mec-10, Degenerin mec-10, [Score=59.7, Expect=1e-09]} {Smed: dd_Smed_v6_31771_0_1, dd_Smed_v6_31771_0_1, [Score=68.6, Expect=8e-13]} {RNA1509_30015} {RNA1310_28165} {RNA815_4127}

Mlig455_035115 {REF} {Length: 3798} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=100.4]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=51.2, Expect=3e-06]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=50.8, Expect=3e-06]; ENSMUSG00000020704, Asic2, acid-sensing (proton-gated) ion channel 2, [Score=48.9, Expect=1e-05]} {Celegans: WBGene00003174, mec-10, Degenerin mec-10, [Score=59.7, Expect=4e-09]} {Smed: dd_Smed_v6_31771_0_1, dd_Smed_v6_31771_0_1, [Score=67.8, Expect=6e-12]} {RNA1509_30015} {RNA1310_28165} {RNA815_4127}
4. MligTC455_17184 8 0.17 Mlig455_041389

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_041389 {REF} {Length: 157} {RNA1310_84536}
5. MligTC455_12984 74 1.54 Mlig455_036823

Neo: -

Age: -

 LOXHD1 0.969 - - - - - 0.969 Mlig455_036823 {REF} {Length: 4023} {Pfam: PLAT/LH2 domain [PF01477.25, score=112.3]} {Human: ENSG00000167210, LOXHD1, lipoxygenase homology domains 1, [Score=93.6, Expect=2e-18]} {Mouse: ENSMUSG00000032818, Loxhd1, lipoxygenase homology domains 1, [Score=90.5, Expect=1e-17]} {Smed: dd_Smed_v6_10460_0_1, dd_Smed_v6_10460_0_1, [Score=108, Expect=2e-23]} {RNA1509_6796} {RNA1310_2867.1} {RNA815_966}
6. MligTC455_08568 50 1.04 Mlig455_023688

Neo: -

Age: -

 0.963 - - - - - 0.963 Mlig455_023688 {REF} {Length: 345} {NoTransDecoderORF} {RNA1509_8910} {RNA1310_44262} {RNA815_4406.1}
7. MligTC455_12232 7 0.15 Mlig455_036341, Mlig455_036343, Mlig455_036384

Neo: -

Age: -

 CAMSAP3 0.961 - - - - 0.961 -

Mlig455_036341 {REF} {Length: 3094} {Pfam: Pentapeptide repeats (9 copies) [PF13599.8, score=44.1]; Pentapeptide repeats (9 copies) [PF13576.8, score=27.0]; Pentapeptide repeats (8 copies) [PF00805.24, score=24.3]} {RNA1509_43508} {RNA1310_1488} {RNA815_13505}

Mlig455_036343 {REF} {Length: 1391} {Pfam: Microtubule-binding calmodulin-regulated spectrin-associated [PF08683.13, score=145.7]} {Human: ENSG00000076826, CAMSAP3, calmodulin regulated spectrin associated protein family member 3, [Score=124, Expect=4e-31]; ENSG00000130559, CAMSAP1, calmodulin regulated spectrin associated protein 1, [Score=118, Expect=2e-29]} {Mouse: ENSMUSG00000044433, Camsap3, calmodulin regulated spectrin-associated protein family, member 3, [Score=124, Expect=3e-31]; ENSMUSG00000026933, Camsap1, calmodulin regulated spectrin-associated protein 1, [Score=118, Expect=2e-29]} {Dmel: FBgn0263197, Patronin, [Score=121, Expect=1e-30]} {Celegans: WBGene00004121, ptrn-1, Patronin (microtubule-binding protein) homolog, [RH, Score=119, Expect=3e-31]} {Smed: dd_Smed_v6_7356_0_1, dd_Smed_v6_7356_0_1, [Score=141, Expect=1e-37]} {RNA1509_13577} {RNA1310_1421} {RNA815_17400}

Mlig455_036384 {REF} {Length: 5924} {TRANSSPLICED} {Pfam: Microtubule-binding calmodulin-regulated spectrin-associated [PF08683.13, score=142.2]} {Human: ENSG00000076826, CAMSAP3, calmodulin regulated spectrin associated protein family member 3, [Score=126, Expect=2e-28]; ENSG00000130559, CAMSAP1, calmodulin regulated spectrin associated protein 1, [Score=122, Expect=4e-27]} {Mouse: ENSMUSG00000044433, Camsap3, calmodulin regulated spectrin-associated protein family, member 3, [Score=126, Expect=1e-28]; ENSMUSG00000026933, Camsap1, calmodulin regulated spectrin-associated protein 1, [Score=121, Expect=5e-27]} {Dmel: FBgn0263197, Patronin, [Score=124, Expect=4e-28]} {Celegans: WBGene00004121, ptrn-1, Patronin (microtubule-binding protein) homolog, [RH, Score=127, Expect=3e-31]} {Smed: dd_Smed_v6_7356_0_1, dd_Smed_v6_7356_0_1, [Score=160, Expect=1e-39]} {RNA1509_13577, RNA1509_43508} {RNA1310_1462, RNA1509_43508} {RNA1509_43508, RNA815_13505}
8. MligTC455_21002 181 3.78 Mlig455_030327

Neo: -

Age: -

 BCL2L1 0.959 - - - 0.959 - - Mlig455_030327 {REF} {Length: 1512} {TRANSSPLICED} {Pfam: Apoptosis regulator proteins, Bcl-2 family [PF00452.21, score=74.4]} {Human: ENSG00000171552, BCL2L1, BCL2 like 1, [RH, Score=87.4, Expect=1e-20]} {Mouse: ENSMUSG00000007659, Bcl2l1, BCL2-like 1, [RH, Score=87.4, Expect=9e-21]} {Smed: dd_Smed_v6_84197_0_1, dd_Smed_v6_84197_0_1, [Score=52.8, Expect=8e-09]} {RNA1509_14563} {RNA1310_15524, RNA1509_14563} {RNA1509_14563, RNA815_7075.1}
9. MligTC455_33187 55 1.15 Mlig455_006825, Mlig455_043653, Mlig455_048209, Mlig455_062093

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.652

 ANGPTL2, DLL1, FIBCD1 0.955 - - - 0.955 - -

Mlig455_006825 {REF} {Length: 1271} {RNA1310_16916} {RNA815_13612}

Mlig455_043653 {REF} {Length: 1234} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=99.3]} {Human: ENSG00000130720, FIBCD1, fibrinogen C domain containing 1, [Score=98.6, Expect=7e-25]; ENSG00000160339, FCN2, ficolin 2, [Score=98.6, Expect=2e-25]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=94.4, Expect=3e-23]} {Mouse: ENSMUSG00000026841, Fibcd1, fibrinogen C domain containing 1, [Score=99.0, Expect=4e-25]; ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=94.7, Expect=1e-23]} {Dmel: FBgn0003326, sca, scabrous, [Score=76.6, Expect=3e-17]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=85.1, Expect=2e-20]} {RNA1509_26827} {RNA1310_31596.1} {RNA815_17173.1}

Mlig455_048209 {REF} {Length: 3698} {Pfam: EGF-like domain [PF00008.29, score=85.8]; Calcium-binding EGF domain [PF07645.17, score=73.8]; Delta serrate ligand [PF01414.21, score=62.4]; Human growth factor-like EGF [PF12661.9, score=48.4]; EGF-like domain [PF07974.15, score=38.8]; EGF domain [PF12947.9, score=31.4]; Complement Clr-like EGF-like [PF12662.9, score=26.0]} {Human: ENSG00000198719, DLL1, delta like canonical Notch ligand 1, [Score=171, Expect=2e-45]; ENSG00000275555, DLL1, delta like canonical Notch ligand 1, [Score=171, Expect=2e-45]} {Mouse: ENSMUSG00000014773, Dll1, delta like canonical Notch ligand 1, [Score=169, Expect=9e-45]} {Dmel: FBgn0004647, N, Notch, [Score=144, Expect=8e-36]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=124, Expect=2e-29]} {Smed: dd_Smed_v6_11876_0_1, dd_Smed_v6_11876_0_1, [Score=135, Expect=2e-33]}

Mlig455_062093 {REF} {Length: 1239} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=154.3]} {Human: ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=135, Expect=1e-35]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=135, Expect=4e-36]; ENSG00000160339, FCN2, ficolin 2, [Score=132, Expect=2e-36]; ENSG00000130720, FIBCD1, fibrinogen C domain containing 1, [Score=132, Expect=8e-35]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=138, Expect=5e-37]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=135, Expect=7e-36]; ENSMUSG00000026841, Fibcd1, fibrinogen C domain containing 1, [Score=132, Expect=4e-35]} {Dmel: FBgn0034160, CG5550, [Score=120, Expect=2e-32]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=115, Expect=7e-29]} {RNA1509_26827} {RNA1310_32107.2} {RNA815_17173.3}
10. MligTC455_37540 10 0.2 Mlig455_026508

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_026508 {REF} {Length: 1561} {NoTransDecoderORF} {RNA1310_43655} {RNA815_44494}
11. MligTC455_28242 66 1.38 Mlig455_041773

Neo: -

Age: -

 0.954 - - - 0.954 - - Mlig455_041773 {REF} {Length: 2818} {Pfam: Bacterial transferase hexapeptide (six repeats) [PF00132.26, score=22.0]} {RNA1509_49686} {RNA1310_5450.1} {RNA815_16253.2}
12. MligTC455_32019 33 0.69 Mlig455_027096

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_027096 {REF} {Length: 1214} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_5479.1} {RNA815_3258.1}
13. MligTC455_25153 368 7.66 Mlig455_040073

Neo: -

Age: -

Region-enriched R5: 3.037/0.00000

 0.952 - - - 0.952 - - Mlig455_040073 {REF} {Length: 2051} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=38.7]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=20.1]} {Smed: dd_Smed_v6_2982_0_2, dd_Smed_v6_2982_0_2, [Score=83.2, Expect=5e-18]} {RNA1509_20770} {RNA1310_16534} {RNA815_6249}
14. MligTC455_17391 27 0.57 Mlig455_049634

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_049634 {REF} {Length: 1011} {NoTransDecoderORF} {RNA1509_49310} {RNA1310_37351.2} {RNA815_38696}
15. MligTC455_36355 2635 54.9 Mlig455_049764

Neo: -

Age: -

Region-enriched R6: 4.773/0.00000

 ANOS1 0.951 - - - - 0.951 - Mlig455_049764 {REF} {Length: 3483} {Pfam: Fibronectin type III domain [PF00041.23, score=64.7]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=26.5]; WAP-type (Whey Acidic Protein) 'four-disulfide core' [PF00095.23, score=22.9]} {Human: ENSG00000011201, ANOS1, anosmin 1, [RH, Score=166, Expect=5e-42]} {Smed: dd_Smed_v6_6746_0_1, dd_Smed_v6_6746_0_1, [RH, Score=253, Expect=1e-72]} {RNA1509_15282} {RNA1310_3612.1} {RNA815_4193}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA