TomoSeq data search

Data search

Results for MligTC455_25016

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_25016

85

1.77

Mlig455_006061

Neo: -

Age: Down-Down-Up

TRIM6

Mlig455_006061 {REF} {Length: 5682} {Pfam: RING-type zinc-finger [PF13445.8, score=39.1]; zinc finger of C3HC4-type, RING [PF15227.8, score=33.4]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=28.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=28.0]; NHL repeat [PF01436.23, score=25.5]; Ring finger domain [PF13639.8, score=20.3]; Exonuclease VII, large subunit [PF02601.17, score=19.9]; zinc-RING finger domain [PF14634.8, score=19.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.1]} {Human: ENSG00000121236, TRIM6, tripartite motif containing 6, [RH, Score=64.3, Expect=3e-10]; ENSG00000258588, TRIM6-TRIM34, TRIM6-TRIM34 readthrough, [RH, Score=62.8, Expect=1e-09]} {Mouse: ENSMUSG00000072244, Trim6, tripartite motif-containing 6, [RH, Score=57.0, Expect=4e-08]} {Celegans: WBGene00003597, nhl-1, RING finger protein nhl-1, [Score=48.9, Expect=9e-06]} {RNA1509_34528, RNA1509_7463, RNA1509_9450} {RNA1310_3683.1, RNA1509_34528, RNA1509_7463, RNA1509_9450} {RNA1509_34528, RNA1509_7463, RNA1509_9450, RNA815_2165}

Cumulative graph for MligTC455_25016

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.893	1.676	0.61204	1.00000
RegionR2	-0.002	1.676	0.86691	1.00000
RegionR3	0.079	1.676	0.83841	1.00000
RegionR4	0.159	1.676	0.82727	1.00000
RegionR5	0.384	1.676	0.69305	1.00000
RegionR6	1.434	1.676	0.15996	0.71251
RegionR7	-0.649	1.676	0.97607	1.00000
RegionR8	1.487	1.676	0.40366	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.902	1.676	0.99990	1.00000
RegenerationR2	-0.106	1.676	0.89204	1.00000
RegenerationR3	1.12	1.676	0.21548	0.65216
RegenerationR4	0.9	1.676	0.33343	0.76717
RegenerationR5	0.172	1.676	0.83259	0.99828
RegenerationR6	-0.837	1.676	0.32915	0.67541
RegenerationBL	1.271	1.676	0.24084	0.59401
RegenerationTP	1.939	1.676	0.10961	0.50976

Genes with expression patterns similar to MligTC455_25016

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_25016	85	1.77	Mlig455_006061	Neo: - Age: Down-Down-Up	TRIM6	5	1.000	-	1.000	1.000	1.000	1.000	Mlig455_006061 {REF} {Length: 5682} {Pfam: RING-type zinc-finger [PF13445.8, score=39.1]; zinc finger of C3HC4-type, RING [PF15227.8, score=33.4]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=28.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=28.0]; NHL repeat [PF01436.23, score=25.5]; Ring finger domain [PF13639.8, score=20.3]; Exonuclease VII, large subunit [PF02601.17, score=19.9]; zinc-RING finger domain [PF14634.8, score=19.3]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.1]} {Human: ENSG00000121236, TRIM6, tripartite motif containing 6, [RH, Score=64.3, Expect=3e-10]; ENSG00000258588, TRIM6-TRIM34, TRIM6-TRIM34 readthrough, [RH, Score=62.8, Expect=1e-09]} {Mouse: ENSMUSG00000072244, Trim6, tripartite motif-containing 6, [RH, Score=57.0, Expect=4e-08]} {Celegans: WBGene00003597, nhl-1, RING finger protein nhl-1, [Score=48.9, Expect=9e-06]} {RNA1509_34528, RNA1509_7463, RNA1509_9450} {RNA1310_3683.1, RNA1509_34528, RNA1509_7463, RNA1509_9450} {RNA1509_34528, RNA1509_7463, RNA1509_9450, RNA815_2165}
2.	MligTC455_12909	49	1.01	Mlig455_023925	Neo: - Age: Down-Up-Down Region-enriched R4: 5.857/0.01219 Region-enriched R5: 3.540/0.03087	PPP3R1	0.965	-	-	-	0.965	-	-	Mlig455_023925 {REF} {Length: 1630} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=68.1]; EF-hand domain pair [PF13499.8, score=67.2]; EF hand [PF13202.8, score=56.2]; EF-hand domain [PF13405.8, score=55.1]; EF-hand domain pair [PF13833.8, score=34.2]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=19.1]} {Human: ENSG00000221823, PPP3R1, protein phosphatase 3 regulatory subunit B, alpha, [Score=235, Expect=4e-80]} {Mouse: ENSMUSG00000033953, Ppp3r1, protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I), [Score=235, Expect=3e-80]} {Dmel: FBgn0015614, CanB2, Calcineurin B2, [Score=223, Expect=7e-76]} {Celegans: WBGene00000554, cnb-1, Protein phosphatase 2B regulatory subunit cnb-1, [Score=221, Expect=6e-75]} {Smed: dd_Smed_v6_5589_0_1, dd_Smed_v6_5589_0_1, [Score=236, Expect=2e-81]} {RNA1509_37367} {RNA1310_41038} {RNA815_36547}
3.	MligTC455_19131	1797	37.43	Mlig455_026603, Mlig455_042804	Neo: - Age: Down-Up-Up Region-enriched R4: 1.957/0.00031 Region-enriched R5: 1.063/0.03892 Regeneration-upregulated BL: 2.118 Regeneration-enriched BL: 2.118	METTL27	0.957	-	-	-	0.957	-	-	Mlig455_026603 {REF} {Length: 1031} {Pfam: Methyltransferase domain [PF13649.8, score=31.1]} {Human: ENSG00000165171, METTL27, methyltransferase like 27, [Score=86.7, Expect=4e-20]} {Mouse: ENSMUSG00000040557, Mettl27, methyltransferase like 27, [Score=85.9, Expect=3e-20]} {Smed: dd_Smed_v6_5408_0_1, dd_Smed_v6_5408_0_1, [Score=151, Expect=5e-46]} {RNA1509_29375} {RNA1310_35983} {RNA815_12596} Mlig455_042804 {REF} {Length: 1175} {Pfam: Methyltransferase domain [PF13649.8, score=31.1]} {Human: ENSG00000165171, METTL27, methyltransferase like 27, [Score=86.3, Expect=6e-20]} {Mouse: ENSMUSG00000040557, Mettl27, methyltransferase like 27, [Score=85.9, Expect=4e-20]} {Smed: dd_Smed_v6_5408_0_1, dd_Smed_v6_5408_0_1, [RH, Score=155, Expect=2e-47]} {RNA1509_29375} {RNA1310_35983} {RNA815_12596}
4.	MligTC455_26985	11727	244.31	Mlig455_067101	Neo: - Age: logFC(26M/2M)=-0.405		0.954	-	-	-	0.954	-	-	Mlig455_067101 {REF} {Length: 1375} {RNA1509_18861} {RNA1310_20071} {RNA815_8472}
5.	MligTC455_52920	771	16.06	Mlig455_006314, Mlig455_033804, Mlig455_039341, Mlig455_043187, Mlig455_054935, Mlig455_060140	Neo: - Age: Down-Up-Down Regeneration-upregulated BL: 3.382 Regeneration-enriched BL: 3.382		0.954	-	-	-	0.954	-	-	Mlig455_006314 {REF} {Length: 703} {RNA1509_17207} {RNA1310_9936.1} {RNA815_40410} Mlig455_033804 {REF} {Length: 884} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=53.1, Expect=9e-09]} {RNA1509_17207} {RNA1310_9936.1} {RNA815_40410} Mlig455_039341 {REF} {Length: 703} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=53.1, Expect=8e-09]} {RNA1509_17207} {RNA1310_664.1} {RNA815_40410} Mlig455_043187 {REF} {Length: 904} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=54.3, Expect=3e-09]} {RNA1509_17207} {RNA1310_664.1} {RNA815_40410} Mlig455_054935 {REF} {Length: 1027} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=56.6, Expect=6e-10]} {RNA1509_17207} {RNA1310_664.1} {RNA815_40410} Mlig455_060140 {REF} {Length: 793} {Mouse: ENSMUSG00000042015, Wdr41, WD repeat domain 41, [Score=52.0, Expect=1e-08]} {RNA1509_17207} {RNA1310_9936.1} {RNA815_40410}
6.	MligTC455_35648	11131	231.9	Mlig455_044460	Neo: - Age: logFC(26M/2M)=0.289	CALR	0.953	-	-	-	0.953	-	-	Mlig455_044460 {REF} {Length: 2380} {Pfam: Calreticulin family [PF00262.20, score=288.1]} {Human: ENSG00000179218, CALR, calreticulin, [RH, Score=499, Expect=2e-176]} {Mouse: ENSMUSG00000003814, Calr, calreticulin, [RH, Score=500, Expect=7e-177]} {Dmel: FBgn0005585, Calr, Calreticulin, [RH, Score=495, Expect=3e-175]} {Celegans: WBGene00000802, crt-1, Calreticulin, [RH, Score=475, Expect=1e-167]} {Smed: dd_Smed_v6_220_0_4, dd_Smed_v6_220_0_4, [RH, Score=557, Expect=0.0]} {RNA1509_145, RNA1509_1668, RNA1509_19425, RNA1509_2053, RNA1509_2499, RNA1509_6909, RNA1509_8886} {RNA1310_7869, RNA1509_145, RNA1509_1668, RNA1509_19425, RNA1509_2053, RNA1509_2499, RNA1509_6909, RNA1509_8886} {RNA1509_145, RNA1509_1668, RNA1509_19425, RNA1509_2053, RNA1509_2499, RNA1509_6909, RNA1509_8886, RNA815_3522.1}

Berezikov Lab - 2020-2021 © ERIBA