M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25023

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25023 121 2.52 Mlig455_026035

Neo: -

Age: -

 TSC2 Mlig455_026035 {REF} {Length: 2368} {Pfam: Rap/ran-GAP [PF02145.17, score=47.7]} {Human: ENSG00000103197, TSC2, TSC complex subunit 2, [Score=94.0, Expect=3e-19]} {Mouse: ENSMUSG00000002496, Tsc2, tuberous sclerosis 2, [Score=87.0, Expect=4e-17]} {Dmel: FBgn0005198, gig, gigas, [RH, Score=90.9, Expect=2e-18]} {Celegans: WBGene00018734, F53A10.2, Rap1GAP, [Score=60.5, Expect=2e-09]} {RNA1509_40672} {RNA1310_1230.1} {RNA815_10644}

Cumulative graph for MligTC455_25023

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.342 2.143 0.30974 0.95900
RegionR2 -0.734 2.143 0.44466 0.83323
RegionR3 -0.605 2.143 0.47152 0.97714
RegionR4 0.562 2.143 0.53156 0.85553
RegionR5 -0.183 2.143 0.81440 1.00000
RegionR6 -0.165 2.143 0.84954 1.00000
RegionR7 0.069 2.143 0.95064 1.00000
RegionR8 -1.287 2.143 0.51945 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.383 2.143 0.23453 0.96413
RegenerationR2 1.242 2.143 0.04186 0.33782
RegenerationR3 1.117 2.143 0.15293 0.58270
RegenerationR4 0.685 2.143 0.37736 0.79947
RegenerationR5 0.871 2.143 0.18487 0.61521
RegenerationR6 0.077 2.143 0.92684 1.00000
RegenerationBL 0.984 2.143 0.38247 0.75089
RegenerationTP 1.321 2.143 0.31475 0.75957


Genes with expression patterns similar to MligTC455_25023

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25023 121 2.52 Mlig455_026035

Neo: -

Age: -

 TSC2 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_026035 {REF} {Length: 2368} {Pfam: Rap/ran-GAP [PF02145.17, score=47.7]} {Human: ENSG00000103197, TSC2, TSC complex subunit 2, [Score=94.0, Expect=3e-19]} {Mouse: ENSMUSG00000002496, Tsc2, tuberous sclerosis 2, [Score=87.0, Expect=4e-17]} {Dmel: FBgn0005198, gig, gigas, [RH, Score=90.9, Expect=2e-18]} {Celegans: WBGene00018734, F53A10.2, Rap1GAP, [Score=60.5, Expect=2e-09]} {RNA1509_40672} {RNA1310_1230.1} {RNA815_10644}
2. MligTC455_39672 865 18.02 Mlig455_031961, Mlig455_032012

Neo: -

Age: -

 RAP1B, RAP2B 1.771 - - 0.968 - - 0.803

Mlig455_031961 {REF} {Length: 1982} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=181.2]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=69.5]; ADP-ribosylation factor family [PF00025.23, score=38.0]; RsgA GTPase [PF03193.18, score=26.2]; 50S ribosome-binding GTPase [PF01926.25, score=21.7]} {Human: ENSG00000127314, RAP1B, RAP1B, member of RAS oncogene family, [Score=212, Expect=2e-70]; ENSG00000181467, RAP2B, RAP2B, member of RAS oncogene family, [Score=212, Expect=2e-70]; ENSG00000116473, RAP1A, RAP1A, member of RAS oncogene family, [Score=207, Expect=3e-68]; ENSG00000123728, RAP2C, RAP2C, member of RAS oncogene family, [Score=207, Expect=2e-68]; ENSG00000125249, RAP2A, RAP2A, member of RAS oncogene family, [Score=204, Expect=3e-67]} {Mouse: ENSMUSG00000051615, Rap2a, RAS related protein 2a, [Score=213, Expect=5e-71]; ENSMUSG00000052681, Rap1b, RAS related protein 1b, [Score=212, Expect=2e-70]; ENSMUSG00000036894, Rap2b, RAP2B, member of RAS oncogene family, [Score=212, Expect=1e-70]; ENSMUSG00000050029, Rap2c, RAP2C, member of RAS oncogene family, [Score=207, Expect=1e-68]; ENSMUSG00000068798, Rap1a, RAS-related protein 1a, [Score=207, Expect=2e-68]} {Dmel: FBgn0004636, Rap1, Rap1 GTPase, [Score=206, Expect=3e-68]} {Celegans: WBGene00004308, rap-2, RAP homolog (Vertebrate Rap GTPase family), [Score=220, Expect=7e-74]} {Smed: dd_Smed_v6_1239_0_1, dd_Smed_v6_1239_0_1, [Score=204, Expect=6e-68]} {RNA1509_32276} {RNA1310_2841} {RNA815_8102}

Mlig455_032012 {REF} {Length: 1925} {Pfam: Ras family [PF00071.24, score=185.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=72.2]; ADP-ribosylation factor family [PF00025.23, score=38.3]; RsgA GTPase [PF03193.18, score=26.7]; 50S ribosome-binding GTPase [PF01926.25, score=21.4]; Elongation factor Tu GTP binding domain [PF00009.29, score=19.7]} {Human: ENSG00000181467, RAP2B, RAP2B, member of RAS oncogene family, [Score=214, Expect=4e-71]; ENSG00000127314, RAP1B, RAP1B, member of RAS oncogene family, [Score=214, Expect=3e-71]; ENSG00000123728, RAP2C, RAP2C, member of RAS oncogene family, [Score=209, Expect=4e-69]; ENSG00000116473, RAP1A, RAP1A, member of RAS oncogene family, [Score=209, Expect=4e-69]; ENSG00000125249, RAP2A, RAP2A, member of RAS oncogene family, [Score=206, Expect=4e-68]} {Mouse: ENSMUSG00000051615, Rap2a, RAS related protein 2a, [Score=215, Expect=7e-72]; ENSMUSG00000036894, Rap2b, RAP2B, member of RAS oncogene family, [Score=214, Expect=3e-71]; ENSMUSG00000052681, Rap1b, RAS related protein 1b, [Score=214, Expect=2e-71]; ENSMUSG00000050029, Rap2c, RAP2C, member of RAS oncogene family, [Score=209, Expect=2e-69]; ENSMUSG00000068798, Rap1a, RAS-related protein 1a, [Score=209, Expect=3e-69]} {Dmel: FBgn0004636, Rap1, Rap1 GTPase, [Score=208, Expect=4e-69]} {Celegans: WBGene00004308, rap-2, RAP homolog (Vertebrate Rap GTPase family), [RH, Score=222, Expect=1e-74]} {Smed: dd_Smed_v6_1239_0_1, dd_Smed_v6_1239_0_1, [Score=207, Expect=9e-69]} {RNA1509_32276} {RNA1310_2841, RNA1509_32276} {RNA1509_32276, RNA815_8102}
3. MligTC455_25665 102 2.12 Mlig455_004753

Neo: -

Age: logFC(26M/2M)=1.462

 ANKHD1-EIF4EBP3 1.673 - - - - 0.957 0.716 Mlig455_004753 {REF} {Length: 3594} {Pfam: Protein kinase domain [PF00069.27, score=187.3]; Ankyrin repeats (3 copies) [PF12796.9, score=151.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=123.6]; Ankyrin repeats (many copies) [PF13637.8, score=91.2]; Ankyrin repeat [PF13606.8, score=89.9]; Ankyrin repeats (many copies) [PF13857.8, score=83.9]; Ankyrin repeat [PF00023.32, score=82.4]; ABC1 atypical kinase-like domain [PF03109.18, score=20.0]} {Human: ENSG00000254996, ANKHD1-EIF4EBP3, ANKHD1-EIF4EBP3 readthrough, [Score=133, Expect=1e-30]; ENSG00000131503, ANKHD1, ankyrin repeat and KH domain containing 1, [Score=133, Expect=9e-31]; ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=132, Expect=2e-30]; ENSG00000197168, NEK5, NIMA related kinase 5, [Score=128, Expect=2e-29]} {Mouse: ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=134, Expect=3e-31]; ENSMUSG00000024483, Ankhd1, ankyrin repeat and KH domain containing 1, [Score=130, Expect=7e-30]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=132, Expect=1e-30]} {Celegans: WBGene00003822, nsy-1, Mitogen-activated protein kinase kinase kinase nsy-1, [Score=119, Expect=7e-27]} {Smed: dd_Smed_v6_11663_0_4, dd_Smed_v6_11663_0_4, [Score=144, Expect=2e-35]} {RNA1509_16775} {RNA1310_7082} {RNA815_556}
4. MligTC455_34933 692 14.41 Mlig455_052749

Neo: -

Age: -

 0.961 - - 0.961 - - - Mlig455_052749 {REF} {Length: 5737} {TRANSSPLICED} {RNA1509_5485} {RNA1310_1007.1, RNA1509_5485} {RNA1509_5485, RNA815_1873.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA