TomoSeq data search

Data search

Results for MligTC455_25066

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_25066	171	3.55	Mlig455_006200, Mlig455_065207	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.355 Region-enriched R7: 3.096/0.00553	COL12A1, MATN1	Mlig455_006200 {REF} {Length: 5314} {Pfam: von Willebrand factor type A domain [PF00092.30, score=324.0]; von Willebrand factor type A domain [PF13519.8, score=127.9]; von Willebrand factor type A domain [PF13768.8, score=53.6]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=27.7]} {Human: ENSG00000162510, MATN1, matrilin 1, [RH, Score=92.4, Expect=2e-18]} {Mouse: ENSMUSG00000022324, Matn2, matrilin 2, [Score=98.2, Expect=6e-20]; ENSMUSG00000032332, Col12a1, collagen, type XII, alpha 1, [Score=93.6, Expect=2e-18]} {Celegans: WBGene00003482, mua-3, Transmembrane cell adhesion receptor mua-3, [Score=68.9, Expect=3e-11]} {Smed: dd_Smed_v6_1071_0_1, dd_Smed_v6_1071_0_1, [Score=77.4, Expect=4e-14]} {RNA1509_23396} {RNA1310_4094.1} {RNA815_7278} Mlig455_065207 {REF} {Length: 5395} {Pfam: von Willebrand factor type A domain [PF00092.30, score=198.3]; von Willebrand factor type A domain [PF13519.8, score=87.3]; von Willebrand factor type A domain [PF13768.8, score=42.4]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=30.2]} {Human: ENSG00000111799, COL12A1, collagen type XII alpha 1 chain, [Score=84.3, Expect=6e-16]} {Mouse: ENSMUSG00000022324, Matn2, matrilin 2, [Score=104, Expect=1e-22]} {Celegans: WBGene00003497, mup-4, Transmembrane matrix receptor MUP-4, [Score=67.0, Expect=4e-11]} {Smed: dd_Smed_v6_4428_0_1, dd_Smed_v6_4428_0_1, [Score=76.3, Expect=4e-14]} {RNA1509_23396} {RNA1310_4094.1} {RNA815_7278}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_25066

171

3.55

Mlig455_006200, Mlig455_065207

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.355

Region-enriched R7: 3.096/0.00553

COL12A1, MATN1

Mlig455_006200 {REF} {Length: 5314} {Pfam: von Willebrand factor type A domain [PF00092.30, score=324.0]; von Willebrand factor type A domain [PF13519.8, score=127.9]; von Willebrand factor type A domain [PF13768.8, score=53.6]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=27.7]} {Human: ENSG00000162510, MATN1, matrilin 1, [RH, Score=92.4, Expect=2e-18]} {Mouse: ENSMUSG00000022324, Matn2, matrilin 2, [Score=98.2, Expect=6e-20]; ENSMUSG00000032332, Col12a1, collagen, type XII, alpha 1, [Score=93.6, Expect=2e-18]} {Celegans: WBGene00003482, mua-3, Transmembrane cell adhesion receptor mua-3, [Score=68.9, Expect=3e-11]} {Smed: dd_Smed_v6_1071_0_1, dd_Smed_v6_1071_0_1, [Score=77.4, Expect=4e-14]} {RNA1509_23396} {RNA1310_4094.1} {RNA815_7278}

Mlig455_065207 {REF} {Length: 5395} {Pfam: von Willebrand factor type A domain [PF00092.30, score=198.3]; von Willebrand factor type A domain [PF13519.8, score=87.3]; von Willebrand factor type A domain [PF13768.8, score=42.4]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=30.2]} {Human: ENSG00000111799, COL12A1, collagen type XII alpha 1 chain, [Score=84.3, Expect=6e-16]} {Mouse: ENSMUSG00000022324, Matn2, matrilin 2, [Score=104, Expect=1e-22]} {Celegans: WBGene00003497, mup-4, Transmembrane matrix receptor MUP-4, [Score=67.0, Expect=4e-11]} {Smed: dd_Smed_v6_4428_0_1, dd_Smed_v6_4428_0_1, [Score=76.3, Expect=4e-14]} {RNA1509_23396} {RNA1310_4094.1} {RNA815_7278}

Cumulative graph for MligTC455_25066

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-5.183	2.444	0.27587	0.92677
RegionR2	0.587	2.444	0.60364	0.95347
RegionR3	0.849	2.444	0.38634	0.91810
RegionR4	0.299	2.444	0.73649	1.00000
RegionR5	0.229	2.444	0.75976	1.00000
RegionR6	0.541	2.444	0.58679	1.00000
RegionR7	3.096	2.444	0.00010	0.00553
RegionR8	-0.418	2.444	0.94875	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.303	2.444	0.99996	1.00000
RegenerationR2	-0.951	2.444	0.23722	0.68516
RegenerationR3	0.005	2.444	0.99350	1.00000
RegenerationR4	-0.203	2.444	0.80215	0.98720
RegenerationR5	-0.079	2.444	0.91808	1.00000
RegenerationR6	0.332	2.444	0.68130	0.91497
RegenerationBL	0.525	2.444	0.56505	0.91962
RegenerationTP	-1.149	2.444	0.38142	0.81666

Genes with expression patterns similar to MligTC455_25066

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_25066	171	3.55	Mlig455_006200, Mlig455_065207	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.355 Region-enriched R7: 3.096/0.00553	COL12A1, MATN1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_006200 {REF} {Length: 5314} {Pfam: von Willebrand factor type A domain [PF00092.30, score=324.0]; von Willebrand factor type A domain [PF13519.8, score=127.9]; von Willebrand factor type A domain [PF13768.8, score=53.6]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=27.7]} {Human: ENSG00000162510, MATN1, matrilin 1, [RH, Score=92.4, Expect=2e-18]} {Mouse: ENSMUSG00000022324, Matn2, matrilin 2, [Score=98.2, Expect=6e-20]; ENSMUSG00000032332, Col12a1, collagen, type XII, alpha 1, [Score=93.6, Expect=2e-18]} {Celegans: WBGene00003482, mua-3, Transmembrane cell adhesion receptor mua-3, [Score=68.9, Expect=3e-11]} {Smed: dd_Smed_v6_1071_0_1, dd_Smed_v6_1071_0_1, [Score=77.4, Expect=4e-14]} {RNA1509_23396} {RNA1310_4094.1} {RNA815_7278} Mlig455_065207 {REF} {Length: 5395} {Pfam: von Willebrand factor type A domain [PF00092.30, score=198.3]; von Willebrand factor type A domain [PF13519.8, score=87.3]; von Willebrand factor type A domain [PF13768.8, score=42.4]; Trypsin Inhibitor like cysteine rich domain [PF01826.19, score=30.2]} {Human: ENSG00000111799, COL12A1, collagen type XII alpha 1 chain, [Score=84.3, Expect=6e-16]} {Mouse: ENSMUSG00000022324, Matn2, matrilin 2, [Score=104, Expect=1e-22]} {Celegans: WBGene00003497, mup-4, Transmembrane matrix receptor MUP-4, [Score=67.0, Expect=4e-11]} {Smed: dd_Smed_v6_4428_0_1, dd_Smed_v6_4428_0_1, [Score=76.3, Expect=4e-14]} {RNA1509_23396} {RNA1310_4094.1} {RNA815_7278}
2.	MligTC455_25437	6701	139.6	Mlig455_053783	Neo: Germline Age: logFC(26M/2M)=0.151 Regeneration-upregulated BL: 1.592 Regeneration-enriched BL: 1.592	HSP90B1	1.744	-	-	0.781	-	0.963	-	Mlig455_053783 {REF} {Length: 3420} {Pfam: Hsp90 protein [PF00183.20, score=381.8]} {Human: ENSG00000166598, HSP90B1, heat shock protein 90 beta family member 1, [Score=360, Expect=2e-118]} {Mouse: ENSMUSG00000020048, Hsp90b1, heat shock protein 90, beta (Grp94), member 1, [Score=364, Expect=6e-120]} {Dmel: FBgn0039562, Gp93, Glycoprotein 93, [Score=322, Expect=6e-104]} {Celegans: WBGene00011480, enpl-1, Endoplasmin homolog, [Score=339, Expect=8e-112]} {Smed: dd_Smed_v6_758_1_1, dd_Smed_v6_758_1_1, [Score=351, Expect=2e-115]} {RNA1509_1985, RNA1509_4445, RNA1509_48304, RNA1509_48533, RNA1509_55621} {RNA1310_4489, RNA1509_1985, RNA1509_4445, RNA1509_48304, RNA1509_48533, RNA1509_55621} {RNA1509_1985, RNA1509_4445, RNA1509_48304, RNA1509_48533, RNA1509_55621, RNA815_1298.1}
3.	MligTC455_53760	464	9.66	Mlig455_006918, Mlig455_017934	Neo: Irradiation Age: - Region-enriched R5: 1.536/0.01846	PYGO2	0.973	-	-	-	0.973	-	-	Mlig455_006918 {REF} {Length: 4325} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=29.2]} {Human: ENSG00000163348, PYGO2, pygopus family PHD finger 2, [RH, Score=79.0, Expect=2e-16]} {Mouse: ENSMUSG00000047824, Pygo2, pygopus 2, [RH, Score=79.0, Expect=2e-16]} {Smed: dd_Smed_v6_6971_0_1, dd_Smed_v6_6971_0_1, [RH, Score=62.8, Expect=9e-12]} {RNA1509_58925} {RNA1310_14134, RNA1509_58925} {RNA1509_58925, RNA815_20552} Mlig455_017934 {REF} {Length: 2670} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=29.2]} {Human: ENSG00000163348, PYGO2, pygopus family PHD finger 2, [RH, Score=79.0, Expect=2e-16]} {Mouse: ENSMUSG00000047824, Pygo2, pygopus 2, [RH, Score=79.0, Expect=2e-16]} {Smed: dd_Smed_v6_6971_0_1, dd_Smed_v6_6971_0_1, [RH, Score=62.8, Expect=9e-12]} {RNA1509_58925} {RNA1310_14134} {RNA815_20552}
4.	MligTC455_49110	155	3.23	Mlig455_006529, Mlig455_006645	Neo: - Age: - Region-enriched R4: 3.272/0.04020		0.956	-	-	-	-	0.956	-	Mlig455_006529 {REF} {Length: 4092} {TRANSSPLICED} {RNA1509_48868} {RNA1310_23809.1, RNA1509_48868} {RNA1509_48868, RNA815_16307} Mlig455_006645 {REF} {Length: 4921} {Pfam: Transmembrane family 220, helix [PF15071.8, score=60.7]} {Mouse: ENSMUSG00000050270, Tmem220, transmembrane protein 220, [RH, Score=65.9, Expect=4e-12]} {RNA1509_48868} {RNA1310_23809.1} {RNA815_16307}
5.	MligTC455_27594	80	1.67	Mlig455_026429	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_026429 {REF} {Length: 3187} {Pfam: Otopetrin [PF03189.15, score=182.4]} {Dmel: FBgn0259150, CG42265, [Score=141, Expect=2e-34]} {Celegans: WBGene00015035, otpl-1, OToPetrin-Like, [Score=92.4, Expect=4e-19]} {Smed: dd_Smed_v6_13612_0_1, dd_Smed_v6_13612_0_1, [Score=238, Expect=4e-69]} {RNA1509_24533} {RNA1310_4254.1} {RNA815_23661}
6.	MligTC455_47487	816	17.01	Mlig455_002254	Neo: - Age: Down-Up-Up		0.954	-	-	-	-	0.954	-	Mlig455_002254 {REF} {Length: 3981} {TRANSSPLICED} {RNA1509_8421} {RNA1310_19895} {RNA815_8122.1}