TomoSeq data search

Data search

Results for MligTC455_25084

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_25084

2901

60.43

Mlig455_028375

Neo: -

Age: -

RTN4

Mlig455_028375 {REF} {Length: 3588} {TRANSSPLICED} {Pfam: Reticulon [PF02453.19, score=91.9]} {Human: ENSG00000115310, RTN4, reticulon 4, [Score=98.2, Expect=2e-22]} {Mouse: ENSMUSG00000020458, Rtn4, reticulon 4, [Score=98.6, Expect=1e-22]} {Dmel: FBgn0053113, Rtnl1, Reticulon-like1, [Score=119, Expect=4e-30]} {Celegans: WBGene00004336, ret-1, Reticulon-like protein, [RH, Score=56.2, Expect=8e-09]} {Smed: dd_Smed_v6_878_0_1, dd_Smed_v6_878_0_1, [RH, Score=70.9, Expect=2e-14]} {RNA1509_1367, RNA1509_39818, RNA1509_48213} {RNA1310_6228.1, RNA1509_39818, RNA1509_48213} {RNA1509_39818, RNA1509_48213, RNA815_3173.1}

Cumulative graph for MligTC455_25084

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.755	6.037	0.16622	0.79020
RegionR2	0.585	6.037	0.01084	0.10589
RegionR3	0.106	6.037	0.58392	1.00000
RegionR4	0.372	6.037	0.09853	0.30454
RegionR5	0.099	6.037	0.58377	0.94209
RegionR6	-0.14	6.037	0.48463	1.00000
RegionR7	-0.512	6.037	0.04999	0.43016
RegionR8	0.246	6.037	0.38114	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.473	6.037	0.52522	1.00000
RegenerationR2	-0.154	6.037	0.43667	0.83839
RegenerationR3	-0.208	6.037	0.35978	0.77652
RegenerationR4	-0.378	6.037	0.09939	0.48905
RegenerationR5	-0.137	6.037	0.52192	0.87049
RegenerationR6	-0.361	6.037	0.13565	0.45193
RegenerationBL	-0.248	6.037	0.36728	0.73561
RegenerationTP	0.301	6.037	0.27064	0.71887

Genes with expression patterns similar to MligTC455_25084

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_25084	2901	60.43	Mlig455_028375	Neo: - Age: -	RTN4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_028375 {REF} {Length: 3588} {TRANSSPLICED} {Pfam: Reticulon [PF02453.19, score=91.9]} {Human: ENSG00000115310, RTN4, reticulon 4, [Score=98.2, Expect=2e-22]} {Mouse: ENSMUSG00000020458, Rtn4, reticulon 4, [Score=98.6, Expect=1e-22]} {Dmel: FBgn0053113, Rtnl1, Reticulon-like1, [Score=119, Expect=4e-30]} {Celegans: WBGene00004336, ret-1, Reticulon-like protein, [RH, Score=56.2, Expect=8e-09]} {Smed: dd_Smed_v6_878_0_1, dd_Smed_v6_878_0_1, [RH, Score=70.9, Expect=2e-14]} {RNA1509_1367, RNA1509_39818, RNA1509_48213} {RNA1310_6228.1, RNA1509_39818, RNA1509_48213} {RNA1509_39818, RNA1509_48213, RNA815_3173.1}
2.	MligTC455_25086	2984	62.16	Mlig455_068835	Neo: - Age: -	RTN4	5.657	0.932	0.980	0.931	0.982	0.835	0.997	Mlig455_068835 {REF} {Length: 3606} {TRANSSPLICED} {Pfam: Reticulon [PF02453.19, score=91.6]} {Human: ENSG00000115310, RTN4, reticulon 4, [Score=99.0, Expect=1e-22]} {Mouse: ENSMUSG00000020458, Rtn4, reticulon 4, [Score=99.0, Expect=8e-23]} {Dmel: FBgn0053113, Rtnl1, Reticulon-like1, [RH, Score=114, Expect=3e-28]} {Celegans: WBGene00004336, ret-1, Reticulon-like protein, [RH, Score=57.4, Expect=4e-09]} {Smed: dd_Smed_v6_878_0_1, dd_Smed_v6_878_0_1, [RH, Score=72.4, Expect=5e-15]} {RNA1509_1367, RNA1509_46758} {RNA1310_6228.1, RNA1509_1367, RNA1509_46758} {RNA1509_1367, RNA1509_46758, RNA815_3173.1}
3.	MligTC455_35454	5891	122.72	Mlig455_000727, Mlig455_000774	Neo: - Age: -		2.449	-	-	0.726	0.958	-	0.765	Mlig455_000727 {REF} {Length: 2172} {RNA1509_19855, RNA1509_2230} {RNA1310_11420, RNA1509_19855, RNA1509_2230} {RNA1509_19855, RNA1509_2230, RNA815_10837.2} Mlig455_000774 {REF} {Length: 2164} {RNA1509_2230} {RNA1310_11420} {RNA815_10837.2}
4.	MligTC455_32540	184	3.84	Mlig455_018323	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.322		1.731	-	0.774	-	0.957	-	-	Mlig455_018323 {REF} {Length: 5951} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=60.2]} {RNA1509_43484, RNA1509_9231} {RNA1310_1476.1, RNA1509_43484, RNA1509_9231} {RNA1509_43484, RNA1509_9231, RNA815_429.1}
5.	MligTC455_27106	105	2.18	Mlig455_022612	Neo: - Age: Up-Down-Down		1.71	-	-	-	0.755	-	0.955	Mlig455_022612 {REF} {Length: 6144} {TRANSSPLICED} {Pfam: TIR domain [PF13676.8, score=157.1]; TIR domain [PF01582.22, score=29.6]; Death domain [PF00531.24, score=29.1]} {Smed: dd_Smed_v6_12177_0_1, dd_Smed_v6_12177_0_1, [RH, Score=638, Expect=0.0]} {RNA1509_29883, RNA1509_42445, RNA1509_47365} {RNA1310_6245, RNA1509_29883, RNA1509_42445, RNA1509_47365} {RNA1509_29883, RNA1509_42445, RNA1509_47365, RNA815_1037}
6.	MligTC455_27358	1252	26.09	Mlig455_049756	Neo: - Age: - Region-enriched R8: 1.720/0.00404	SLCO4A1	1.693	-	-	-	0.960	-	0.733	Mlig455_049756 {REF} {Length: 2819} {Pfam: Organic Anion Transporter Polypeptide (OATP) family [PF03137.22, score=478.0]; Major Facilitator Superfamily [PF07690.18, score=71.9]; Kazal-type serine protease inhibitor domain [PF07648.17, score=21.1]} {Human: ENSG00000101187, SLCO4A1, solute carrier organic anion transporter family member 4A1, [RH, Score=410, Expect=1e-132]} {Mouse: ENSMUSG00000038963, Slco4a1, solute carrier organic anion transporter family, member 4a1, [RH, Score=421, Expect=6e-137]} {Dmel: FBgn0051634, Oatp26F, Organic anion transporting polypeptide 26F, [RH, Score=397, Expect=2e-128]} {Celegans: WBGene00013499, Y70G10A.3, Solute carrier organic anion transporter family member, [RH, Score=335, Expect=6e-105]} {Smed: dd_Smed_v6_8289_0_1, dd_Smed_v6_8289_0_1, [Score=163, Expect=4e-42]} {RNA1509_13547} {RNA1310_6439} {RNA815_1321.1}
7.	MligTC455_22404	767	15.97	Mlig455_001484	Neo: - Age: -	OSCP1	0.965	-	-	-	0.965	-	-	Mlig455_001484 {REF} {Length: 2311} {TRANSSPLICED} {Pfam: Organic solute transport protein 1 [PF10188.11, score=215.0]} {Human: ENSG00000116885, OSCP1, organic solute carrier partner 1, [RH, Score=284, Expect=3e-92]} {Mouse: ENSMUSG00000042616, Oscp1, organic solute carrier partner 1, [RH, Score=286, Expect=4e-93]} {Dmel: FBgn0033685, OSCP1, Organic solute carrier partner 1, [RH, Score=82.8, Expect=2e-17]} {Celegans: WBGene00019996, R10F2.5, [RH, Score=139, Expect=8e-39]} {Smed: dd_Smed_v6_12742_0_1, dd_Smed_v6_12742_0_1, [RH, Score=254, Expect=6e-81]} {RNA1509_15508} {RNA1310_9767, RNA1509_15508} {RNA1509_15508, RNA815_3318.1}
8.	MligTC455_48293	302	6.29	Mlig455_001748	Neo: - Age: -	SLC25A16	0.955	-	-	-	0.955	-	-	Mlig455_001748 {REF} {Length: 2925} {Pfam: Mitochondrial carrier protein [PF00153.29, score=156.3]} {Human: ENSG00000122912, SLC25A16, solute carrier family 25 member 16, [Score=204, Expect=9e-64]} {Mouse: ENSMUSG00000071253, Slc25a16, solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16, [Score=205, Expect=3e-64]} {Dmel: FBgn0067783, DPCoAC, Dephosphocoenzyme A carrier, [Score=115, Expect=3e-30]} {Celegans: WBGene00009666, slc-25A42, SLC (SoLute Carrier) homolog, [Score=116, Expect=7e-31]} {Smed: dd_Smed_v6_12981_0_1, dd_Smed_v6_12981_0_1, [Score=182, Expect=2e-55]} {RNA1509_13258} {RNA1310_27752.2} {RNA815_13428.1}
9.	MligTC455_52742	2743	57.15	Mlig455_019982	Neo: - Age: - Region-enriched R5: 1.776/0.00000	TBATA	0.952	-	-	-	0.952	-	-	Mlig455_019982 {REF} {Length: 2167} {Pfam: SPATIAL [PF15256.8, score=102.4]} {Human: ENSG00000166220, TBATA, thymus, brain and testes associated, [RH, Score=57.8, Expect=3e-09]} {Mouse: ENSMUSG00000020096, Tbata, thymus, brain and testes associated, [RH, Score=65.5, Expect=5e-12]} {Smed: dd_Smed_v6_8051_0_1, dd_Smed_v6_8051_0_1, [RH, Score=62.4, Expect=3e-11]} {RNA1509_12626, RNA1509_45918, RNA1509_48879, RNA1509_6863} {RNA1310_8923.1, RNA1509_12626, RNA1509_45918, RNA1509_6863} {RNA1509_12626, RNA1509_45918, RNA1509_6863, RNA815_3957.1}
10.	MligTC455_24509	558	11.64	Mlig455_008130, Mlig455_008131	Neo: - Age: Down-Up-Down Region-enriched R2: 2.163/0.00814 Region-enriched R7: 2.094/0.00103		0.951	-	-	-	0.951	-	-	Mlig455_008130 {REF} {Length: 1564} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_32433} {RNA1310_19716} {RNA815_13109} Mlig455_008131 {REF} {Length: 1564} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_32433} {RNA1310_19716} {RNA815_13109}

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