TomoSeq data search

Data search

Results for MligTC455_25085

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_25085

237

4.94

Mlig455_066201

Neo: -

Age: -

Region-enriched R4: 2.182/0.02400

RTN4

Mlig455_066201 {REF} {Length: 3368} {TRANSSPLICED} {Pfam: Reticulon [PF02453.19, score=91.6]} {Human: ENSG00000115310, RTN4, reticulon 4, [Score=99.0, Expect=1e-22]} {Mouse: ENSMUSG00000020458, Rtn4, reticulon 4, [Score=99.0, Expect=8e-23]} {Dmel: FBgn0053113, Rtnl1, Reticulon-like1, [RH, Score=114, Expect=3e-28]} {Celegans: WBGene00004336, ret-1, Reticulon-like protein, [RH, Score=57.4, Expect=4e-09]} {Smed: dd_Smed_v6_878_0_1, dd_Smed_v6_878_0_1, [RH, Score=72.4, Expect=5e-15]} {RNA1509_1367} {RNA1310_6228.1} {RNA815_3173.1}

Cumulative graph for MligTC455_25085

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.777	2.876	0.68346	1.00000
RegionR2	0.679	2.876	0.39792	0.79239
RegionR3	-1.389	2.876	0.08799	0.52404
RegionR4	2.182	2.876	0.00293	0.02400
RegionR5	-0.273	2.876	0.69557	1.00000
RegionR6	0.324	2.876	0.64461	1.00000
RegionR7	-0.649	2.876	0.55635	1.00000
RegionR8	-1.65	2.876	0.28126	0.90768

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.539	2.876	0.81133	1.00000
RegenerationR2	1.017	2.876	0.09800	0.49638
RegenerationR3	1.773	2.876	0.03465	0.33054
RegenerationR4	-0.156	2.876	0.82663	0.99621
RegenerationR5	0.979	2.876	0.16303	0.58764
RegenerationR6	0.173	2.876	0.82181	0.98753
RegenerationBL	0.068	2.876	0.95438	1.00000
RegenerationTP	2.494	2.876	0.01845	0.23253

Genes with expression patterns similar to MligTC455_25085

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_25085	237	4.94	Mlig455_066201	Neo: - Age: - Region-enriched R4: 2.182/0.02400	RTN4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_066201 {REF} {Length: 3368} {TRANSSPLICED} {Pfam: Reticulon [PF02453.19, score=91.6]} {Human: ENSG00000115310, RTN4, reticulon 4, [Score=99.0, Expect=1e-22]} {Mouse: ENSMUSG00000020458, Rtn4, reticulon 4, [Score=99.0, Expect=8e-23]} {Dmel: FBgn0053113, Rtnl1, Reticulon-like1, [RH, Score=114, Expect=3e-28]} {Celegans: WBGene00004336, ret-1, Reticulon-like protein, [RH, Score=57.4, Expect=4e-09]} {Smed: dd_Smed_v6_878_0_1, dd_Smed_v6_878_0_1, [RH, Score=72.4, Expect=5e-15]} {RNA1509_1367} {RNA1310_6228.1} {RNA815_3173.1}
2.	MligTC455_21722	312	6.49	Mlig455_063438	Neo: - Age: logFC(26M/2M)=0.427	ANK2	2.644	0.798	-	-	0.964	-	0.882	Mlig455_063438 {REF} {Length: 3720} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=106.5]; Ankyrin repeats (many copies) [PF13637.8, score=92.3]; Ankyrin repeat [PF00023.32, score=90.6]; Ankyrin repeats (many copies) [PF13857.8, score=82.0]; Ankyrin repeat [PF13606.8, score=69.5]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=99.8, Expect=2e-20]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=100, Expect=7e-21]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=89.0, Expect=2e-17]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=87.0, Expect=4e-17]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=94.7, Expect=2e-19]} {RNA1509_5842} {RNA1310_3466.1, RNA1509_5842} {RNA1509_5842, RNA815_1029}
3.	MligTC455_20116	246	5.11	Mlig455_033698	Neo: - Age: Up-Down-Down	PSG7	2.444	0.750	-	-	0.739	-	0.955	Mlig455_033698 {REF} {Length: 2384} {Pfam: Immunoglobulin domain [PF13927.8, score=56.9]; Immunoglobulin I-set domain [PF07679.18, score=52.8]; Immunoglobulin domain [PF13895.8, score=45.0]; Immunoglobulin domain [PF00047.27, score=32.4]; Immunoglobulin V-set domain [PF07686.19, score=25.9]} {Human: ENSG00000221878, PSG7, pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene), [Score=57.0, Expect=3e-08]} {Mouse: ENSMUSG00000020357, Flt4, FMS-like tyrosine kinase 4, [Score=49.7, Expect=1e-05]; ENSMUSG00000008090, Fgfrl1, fibroblast growth factor receptor-like 1, [Score=49.3, Expect=1e-05]} {Smed: dd_Smed_v6_17069_0_1, dd_Smed_v6_17069_0_1, [Score=48.9, Expect=1e-05]} {RNA1509_49333} {RNA1310_10123} {RNA815_12004}
4.	MligTC455_16253	429	8.94	Mlig455_047310	Neo: - Age: -		1.774	-	-	-	0.818	-	0.956	Mlig455_047310 {REF} {Length: 1950} {NoTransDecoderORF} {RNA1509_45784} {RNA1310_39616} {RNA815_1612}
5.	MligTC455_16252	422	8.8	Mlig455_047309	Neo: - Age: Down-Up-Up	GRIK3	1.76	-	-	-	0.800	-	0.960	Mlig455_047309 {REF} {Length: 3394} {Pfam: Ligand-gated ion channel [PF00060.28, score=64.4]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=31.1]; S1 RNA binding domain [PF00575.25, score=19.2]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=85.5, Expect=2e-16]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=85.1, Expect=3e-16]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=84.0, Expect=7e-16]} {Mouse: ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=88.2, Expect=2e-17]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=84.3, Expect=4e-16]} {Dmel: FBgn0038840, Grik, [Score=71.6, Expect=2e-12]} {Smed: dd_Smed_v6_10048_0_1, dd_Smed_v6_10048_0_1, [RH, Score=105, Expect=5e-23]} {RNA1509_9480} {RNA1310_5319.1, RNA1509_9480} {RNA1509_9480, RNA815_1612}
6.	MligTC455_34826	857	17.86	Mlig455_017848, Mlig455_047867	Neo: - Age: - Region-enriched R4: 2.956/0.00165		1.749	-	0.797	-	-	0.952	-	Mlig455_017848 {REF} {Length: 1986} {RNA1509_1080} {RNA1310_70081.1} {RNA815_12381.1} Mlig455_047867 {REF} {Length: 2036} {RNA1509_1080} {RNA1310_70081.1} {RNA815_12381.1}
7.	MligTC455_43546	425	8.86	Mlig455_047577, Mlig455_069697	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.286	MRM2	0.968	-	-	-	-	-	0.968	Mlig455_047577 {REF} {Length: 2267} {TRANSSPLICED} {Pfam: FtsJ-like methyltransferase [PF01728.21, score=168.4]} {Human: ENSG00000122687, MRM2, mitochondrial rRNA methyltransferase 2, [RH, Score=157, Expect=3e-47]} {Mouse: ENSMUSG00000029557, Mrm2, mitochondrial rRNA methyltransferase 2, [RH, Score=151, Expect=3e-45]} {Dmel: FBgn0038737, CG11447, [RH, Score=181, Expect=6e-57]} {Celegans: WBGene00009735, F45G2.9, rRNA methyltransferase 2, mitochondrial, [RH, Score=127, Expect=3e-36]} {Smed: dd_Smed_v6_12446_0_1, dd_Smed_v6_12446_0_1, [RH, Score=166, Expect=1e-51]} {RNA1509_23424} {RNA1310_42006} {RNA815_23276} Mlig455_069697 {REF} {Length: 1974} {TRANSSPLICED} {Pfam: FtsJ-like methyltransferase [PF01728.21, score=168.4]} {Human: ENSG00000122687, MRM2, mitochondrial rRNA methyltransferase 2, [RH, Score=157, Expect=3e-47]} {Mouse: ENSMUSG00000029557, Mrm2, mitochondrial rRNA methyltransferase 2, [RH, Score=151, Expect=3e-45]} {Dmel: FBgn0038737, CG11447, [RH, Score=181, Expect=6e-57]} {Celegans: WBGene00009735, F45G2.9, rRNA methyltransferase 2, mitochondrial, [RH, Score=127, Expect=3e-36]} {Smed: dd_Smed_v6_12446_0_1, dd_Smed_v6_12446_0_1, [RH, Score=166, Expect=1e-51]} {RNA1509_23424} {RNA1310_42006, RNA1509_23424} {RNA1509_23424, RNA815_23276}
8.	MligTC455_26338	241	5.01	Mlig455_030740	Neo: - Age: -		0.956	-	-	-	-	-	0.956	Mlig455_030740 {REF} {Length: 1037} {TRANSSPLICED} {RNA1509_40810} {RNA1310_34938.1} {RNA815_16686.1}
9.	MligTC455_42623	524	10.91	Mlig455_058028	Neo: - Age: -	GAS2L1	0.952	-	-	-	-	-	0.952	Mlig455_058028 {REF} {Length: 2577} {Pfam: Growth-Arrest-Specific Protein 2 Domain [PF02187.19, score=105.5]; Calponin homology (CH) domain [PF00307.33, score=29.6]} {Human: ENSG00000185340, GAS2L1, growth arrest specific 2 like 1, [RH, Score=222, Expect=4e-64]} {Mouse: ENSMUSG00000034201, Gas2l1, growth arrest-specific 2 like 1, [RH, Score=257, Expect=1e-77]} {Dmel: FBgn0029881, pigs, pickled eggs, [Score=245, Expect=4e-71]} {Celegans: WBGene00006876, vab-10, VAB-10B protein, [Score=75.5, Expect=5e-14]} {Smed: dd_Smed_v6_8154_0_1, dd_Smed_v6_8154_0_1, [RH, Score=271, Expect=6e-85]} {RNA1509_28378} {RNA1310_8988.1, RNA1509_28378} {RNA1509_28378, RNA815_19449}

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