M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25234

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25234 3 0.06 Mlig455_007653

Neo: -

Age: Up-Down-Up

 KY Mlig455_007653 {REF} {Length: 8282} {TRANSSPLICED} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [Score=99.4, Expect=3e-20]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [Score=101, Expect=4e-21]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=203, Expect=3e-53]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=177, Expect=5e-47]} {Smed: dd_Smed_v6_5330_0_1, dd_Smed_v6_5330_0_1, [Score=399, Expect=1e-113]} {RNA1509_44284, RNA1509_9599} {RNA1310_253, RNA1509_44284} {RNA1509_44284, RNA815_228}

Cumulative graph for MligTC455_25234

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_25234

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_00857 18 0.38 Mlig455_014064, Mlig455_070130

Neo: -

Age: -

 1 - - - - - 1.000

Mlig455_014064 {REF} {Length: 295} {NoTransDecoderORF} {RNA1509_32237} {RNA1310_25044} {RNA815_10572}

Mlig455_070130 {REF} {Length: 707} {NoTransDecoderORF} {RNA1509_32237} {RNA1310_25044} {RNA815_10572}
2. MligTC455_04752 5 0.1 Mlig455_035677

Neo: -

Age: -

 1 - - - - - 1.000 Mlig455_035677 {REF} {Length: 206} {NoTransDecoderORF} {RNA1509_58177} {RNA1310_48652} {RNA815_51356.1}
3. MligTC455_25234 3 0.06 Mlig455_007653

Neo: -

Age: Up-Down-Up

 KY 1 - - - - - 1.000 Mlig455_007653 {REF} {Length: 8282} {TRANSSPLICED} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [Score=99.4, Expect=3e-20]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [Score=101, Expect=4e-21]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=203, Expect=3e-53]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=177, Expect=5e-47]} {Smed: dd_Smed_v6_5330_0_1, dd_Smed_v6_5330_0_1, [Score=399, Expect=1e-113]} {RNA1509_44284, RNA1509_9599} {RNA1310_253, RNA1509_44284} {RNA1509_44284, RNA815_228}
4. MligTC455_45183 8 0.16 Mlig455_027395

Neo: -

Age: Up-Down-Down

 1 - - - - - 1.000 Mlig455_027395 {REF} {Length: 2117} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=148.9]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=50.1, Expect=6e-06]} {Celegans: WBGene00012137, asic-2, Degenerin-like protein asic-2, [Score=57.0, Expect=3e-08]} {Smed: dd_Smed_v6_19835_0_1, dd_Smed_v6_19835_0_1, [RH, Score=229, Expect=1e-67]} {RNA1310_59552} {RNA815_48501}
5. MligTC455_50029 35 0.74 Mlig455_010619, Mlig455_010708

Neo: -

Age: -

 FOXA1 1 - - - - - 1.000

Mlig455_010619 {REF} {Length: 1170} {Pfam: Forkhead domain [PF00250.20, score=110.8]} {Human: ENSG00000129514, FOXA1, forkhead box A1, [Score=168, Expect=3e-48]; ENSG00000170608, FOXA3, forkhead box A3, [Score=164, Expect=1e-47]; ENSG00000125798, FOXA2, forkhead box A2, [Score=163, Expect=2e-46]} {Mouse: ENSMUSG00000035451, Foxa1, forkhead box A1, [Score=167, Expect=3e-48]; ENSMUSG00000040891, Foxa3, forkhead box A3, [Score=164, Expect=7e-48]; ENSMUSG00000037025, Foxa2, forkhead box A2, [Score=164, Expect=7e-47]} {Dmel: FBgn0000659, fkh, fork head, [Score=169, Expect=2e-48]} {Celegans: WBGene00004013, pha-4, Defective pharyngeal development protein 4, [Score=150, Expect=3e-42]} {Smed: dd_Smed_v6_10718_0_4, dd_Smed_v6_10718_0_4, [Score=175, Expect=2e-51]}

Mlig455_010708 {REF} {Length: 1194} {Pfam: Forkhead domain [PF00250.20, score=110.9]} {Human: ENSG00000129514, FOXA1, forkhead box A1, [Score=168, Expect=3e-48]; ENSG00000125798, FOXA2, forkhead box A2, [Score=163, Expect=2e-46]; ENSG00000170608, FOXA3, forkhead box A3, [Score=163, Expect=1e-47]} {Mouse: ENSMUSG00000035451, Foxa1, forkhead box A1, [Score=167, Expect=4e-48]; ENSMUSG00000040891, Foxa3, forkhead box A3, [Score=165, Expect=2e-48]; ENSMUSG00000037025, Foxa2, forkhead box A2, [Score=164, Expect=9e-47]} {Dmel: FBgn0000659, fkh, fork head, [Score=168, Expect=2e-48]} {Celegans: WBGene00004013, pha-4, Defective pharyngeal development protein 4, [Score=151, Expect=2e-42]} {Smed: dd_Smed_v6_10718_0_3, dd_Smed_v6_10718_0_3, [Score=175, Expect=2e-51]}
6. MligTC455_56767 8 0.16 Mlig455_003500

Neo: -

Age: -

 1 - - - - - 1.000 Mlig455_003500 {REF} {Length: 94} {NoTransDecoderORF} {RNA1509_13919} {RNA1310_144024} {RNA815_4063.1}
7. MligTC455_07494 2 0.04 Mlig455_020453

Neo: -

Age: -

 0.988 - - - - - 0.988 Mlig455_020453 {REF} {Length: 252} {NoTransDecoderORF}
8. MligTC455_13406 43 0.9 Mlig455_023240

Neo: -

Age: -

 0.987 - - - - - 0.987 Mlig455_023240 {REF} {Length: 908} {NoTransDecoderORF} {RNA1509_40851} {RNA1310_54245, RNA1509_40851} {RNA1509_40851, RNA815_32273}
9. MligTC455_50843 66 1.38 Mlig455_046856

Neo: Germline

Age: Down-Up-Down

 ARHGAP11A 0.975 - - - - - 0.975 Mlig455_046856 {REF} {Length: 1901} {Pfam: RhoGAP domain [PF00620.29, score=92.0]} {Human: ENSG00000198826, ARHGAP11A, Rho GTPase activating protein 11A, [Score=90.1, Expect=7e-19]; ENSG00000275568, ARHGAP11A, Rho GTPase activating protein 11A, [Score=90.1, Expect=7e-19]; ENSG00000282168, ARHGAP11A, Rho GTPase activating protein 11A, [Score=89.0, Expect=1e-18]} {Mouse: ENSMUSG00000041219, Arhgap11a, Rho GTPase activating protein 11A, [Score=81.3, Expect=2e-16]} {Dmel: FBgn0038747, RhoGAP92B, Rho GTPase activating protein at 92B, [Score=63.5, Expect=1e-10]} {Celegans: WBGene00001559, gei-1, GEX Interacting protein, [Score=84.3, Expect=2e-17]} {Smed: dd_Smed_v6_6320_0_1, dd_Smed_v6_6320_0_1, [Score=70.9, Expect=3e-13]} {RNA1509_48726} {RNA1310_15193} {RNA815_14855}
10. MligTC455_27263 67 1.39 Mlig455_053712

Neo: Germline

Age: Up-Down-Down

Region-enriched R4: 3.220/0.02483

 0.968 - - - - - 0.968 Mlig455_053712 {REF} {Length: 1169} {Pfam: Cell division protein ZapB [PF06005.14, score=22.3]} {RNA1509_34331} {RNA1310_24939} {RNA815_13293}
11. MligTC455_09756 22 0.45 Mlig455_039618, Mlig455_051420

Neo: -

Age: -

 0.967 - - - - - 0.967

Mlig455_039618 {REF} {Length: 250} {NoTransDecoderORF} {RNA1509_27178} {RNA1310_42116} {RNA815_36714}

Mlig455_051420 {REF} {Length: 379} {NoTransDecoderORF} {RNA1509_27178} {RNA1310_42116} {RNA815_36714}
12. MligTC455_09848 11 0.23 Mlig455_018139, Mlig455_018193

Neo: -

Age: -

 0.967 - - - - - 0.967

Mlig455_018139 {REF} {Length: 612} {TRANSSPLICED} {RNA1310_46963} {RNA815_36938}

Mlig455_018193 {REF} {Length: 905} {RNA1310_46963} {RNA815_36938}
13. MligTC455_02424 1 0.03 Mlig455_020846

Neo: -

Age: -

 0.965 - - - - - 0.965 Mlig455_020846 {REF} {Length: 395} {NoTransDecoderORF} {RNA1310_83381} {RNA815_43376}
14. MligTC455_03311 56 1.17 Mlig455_002545, Mlig455_002588

Neo: Int S/G2/M

Age: -

 0.962 - - - - - 0.962

Mlig455_002545 {REF} {Length: 740} {NoTransDecoderORF} {RNA1310_130432} {RNA815_14633}

Mlig455_002588 {REF} {Length: 817} {RNA1310_130432} {RNA815_14633}
15. MligTC455_05865 77 1.6 Mlig455_019309, Mlig455_019530, Mlig455_021054

Neo: -

Age: -

 0.953 - - - - - 0.953

Mlig455_019309 {REF} {Length: 741} {RNA1509_45948} {RNA1310_18762.2} {RNA815_13811}

Mlig455_019530 {REF} {Length: 802} {RNA1509_45948} {RNA1310_18762.1} {RNA815_13811}

Mlig455_021054 {REF} {Length: 762} {RNA1509_45948} {RNA1310_18762.2, RNA1509_45948} {RNA1509_45948, RNA815_13811}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA