TomoSeq data search

Data search

Results for MligTC455_25334

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_25334

410

8.55

Mlig455_000157

Neo: -

Age: -

CDK16

Mlig455_000157 {REF} {Length: 7260} {Pfam: Protein kinase domain [PF00069.27, score=224.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=110.9]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=19.2]; Haspin like kinase domain [PF12330.10, score=18.2]} {Human: ENSG00000102225, CDK16, cyclin dependent kinase 16, [RH, Score=477, Expect=2e-162]; ENSG00000059758, CDK17, cyclin dependent kinase 17, [RH, Score=464, Expect=4e-156]} {Mouse: ENSMUSG00000031065, Cdk16, cyclin-dependent kinase 16, [RH, Score=478, Expect=4e-162]; ENSMUSG00000020015, Cdk17, cyclin-dependent kinase 17, [RH, Score=462, Expect=1e-155]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=358, Expect=1e-115]} {Celegans: WBGene00003961, pct-1, Cyclin-dependent kinase 17, [RH, Score=406, Expect=2e-132]} {Smed: dd_Smed_v6_4172_0_4, dd_Smed_v6_4172_0_4, [RH, Score=454, Expect=4e-151]} {RNA1509_47906} {RNA1310_12547} {RNA815_2428}

Cumulative graph for MligTC455_25334

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.07	3.611	0.26898	0.91977
RegionR2	0.774	3.611	0.41786	0.80979
RegionR3	0.141	3.611	0.79342	1.00000
RegionR4	1.623	3.611	0.05244	0.19917
RegionR5	0.841	3.611	0.30137	0.63705
RegionR6	0.757	3.611	0.38513	0.96255
RegionR7	0.73	3.611	0.47017	1.00000
RegionR8	0.205	3.611	0.79112	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.418	3.611	0.99987	1.00000
RegenerationR2	0.074	3.611	0.86342	1.00000
RegenerationR3	0.293	3.611	0.59111	0.90394
RegenerationR4	-0.659	3.611	0.22077	0.66881
RegenerationR5	0.203	3.611	0.67442	0.94286
RegenerationR6	0.403	3.611	0.43114	0.75847
RegenerationBL	-0.783	3.611	0.29739	0.66036
RegenerationTP	-0.196	3.611	0.80202	1.00000

Genes with expression patterns similar to MligTC455_25334

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_25334	410	8.55	Mlig455_000157	Neo: - Age: -	CDK16	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_000157 {REF} {Length: 7260} {Pfam: Protein kinase domain [PF00069.27, score=224.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=110.9]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=19.2]; Haspin like kinase domain [PF12330.10, score=18.2]} {Human: ENSG00000102225, CDK16, cyclin dependent kinase 16, [RH, Score=477, Expect=2e-162]; ENSG00000059758, CDK17, cyclin dependent kinase 17, [RH, Score=464, Expect=4e-156]} {Mouse: ENSMUSG00000031065, Cdk16, cyclin-dependent kinase 16, [RH, Score=478, Expect=4e-162]; ENSMUSG00000020015, Cdk17, cyclin-dependent kinase 17, [RH, Score=462, Expect=1e-155]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=358, Expect=1e-115]} {Celegans: WBGene00003961, pct-1, Cyclin-dependent kinase 17, [RH, Score=406, Expect=2e-132]} {Smed: dd_Smed_v6_4172_0_4, dd_Smed_v6_4172_0_4, [RH, Score=454, Expect=4e-151]} {RNA1509_47906} {RNA1310_12547} {RNA815_2428}
2.	MligTC455_17106	164	3.43	Mlig455_045134	Neo: - Age: -	RAPGEF1	1.723	-	-	-	0.959	-	0.764	Mlig455_045134 {REF} {Length: 4921} {Pfam: RasGEF domain [PF00617.21, score=83.9]; Domain of unknown function (DUF4371) [PF14291.8, score=59.6]} {Human: ENSG00000107263, RAPGEF1, Rap guanine nucleotide exchange factor 1, [RH, Score=187, Expect=2e-47]} {Mouse: ENSMUSG00000039844, Rapgef1, Rap guanine nucleotide exchange factor (GEF) 1, [RH, Score=188, Expect=9e-48]} {Dmel: FBgn0259228, C3G, C3G guanyl-nucleotide exchange factor, [RH, Score=166, Expect=7e-41]} {Celegans: WBGene00021320, Y34B4A.4, [RH, Score=174, Expect=2e-44]} {Smed: dd_Smed_v6_11351_0_1, dd_Smed_v6_11351_0_1, [RH, Score=130, Expect=2e-30]} {RNA1509_14166} {RNA1310_2752.1} {RNA815_12010.1}
3.	MligTC455_26722	1102	22.96	Mlig455_003923	Neo: - Age: -		0.96	-	-	-	-	0.960	-	Mlig455_003923 {REF} {Length: 4099} {Pfam: Fibronectin type III domain [PF00041.23, score=34.0]} {RNA1509_2952, RNA1509_32361, RNA1509_53164} {RNA1310_4407, RNA1509_2952, RNA1509_32361, RNA1509_53164} {RNA1509_2952, RNA1509_32361, RNA1509_53164, RNA815_1249}
4.	MligTC455_28042	408	8.5	Mlig455_025125	Neo: - Age: -	LDB2	0.96	-	-	-	-	-	0.960	Mlig455_025125 {REF} {Length: 3480} {TRANSSPLICED} {Pfam: LIM-domain binding protein [PF01803.18, score=99.3]; LIM interaction domain (LID) [PF17916.3, score=40.0]} {Human: ENSG00000169744, LDB2, LIM domain binding 2, [Score=218, Expect=2e-64]} {Mouse: ENSMUSG00000039706, Ldb2, LIM domain binding 2, [Score=212, Expect=2e-62]; ENSMUSG00000025223, Ldb1, LIM domain binding 1, [Score=208, Expect=5e-61]} {Dmel: FBgn0013764, Chi, Chip, [Score=190, Expect=1e-52]} {Celegans: WBGene00002261, ldb-1, F58A3.1a; LIM Domain Binding protein, [Score=81.3, Expect=7e-16]} {Smed: dd_Smed_v6_3678_0_1, dd_Smed_v6_3678_0_1, [Score=201, Expect=2e-56]} {RNA1509_58910} {RNA1310_20938} {RNA815_15319}
5.	MligTC455_28817	637	13.27	Mlig455_041602	Neo: - Age: -	UBR4	0.959	-	-	-	-	-	0.959	Mlig455_041602 {REF} {Length: 4017} {Pfam: E3 ubiquitin-protein ligase UBR4 [PF13764.8, score=838.0]} {Human: ENSG00000127481, UBR4, ubiquitin protein ligase E3 component n-recognin 4, [Score=530, Expect=7e-162]} {Mouse: ENSMUSG00000066036, Ubr4, ubiquitin protein ligase E3 component n-recognin 4, [Score=528, Expect=5e-161]} {Dmel: FBgn0011230, poe, purity of essence, [Score=444, Expect=8e-133]} {Celegans: WBGene00016650, ubr-4, UBR E3 ubiquitin ligase homolog, [Score=242, Expect=2e-65]} {Smed: dd_Smed_v6_2422_0_1, dd_Smed_v6_2422_0_1, [Score=189, Expect=1e-48]} {RNA1509_47908, RNA1509_5701} {RNA1310_23083, RNA1509_47908} {RNA1509_47908, RNA815_453.1}
6.	MligTC455_39613	739	15.39	Mlig455_049607	Neo: - Age: -	CIC	0.959	-	-	-	-	0.959	-	Mlig455_049607 {REF} {Length: 6015} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=68.1]; Domain of unknown function (DUF4819) [PF16090.7, score=41.4]; HMG-box domain [PF09011.12, score=36.1]} {Human: ENSG00000079432, CIC, capicua transcriptional repressor, [RH, Score=112, Expect=2e-24]} {Mouse: ENSMUSG00000005442, Cic, capicua transcriptional repressor, [RH, Score=112, Expect=8e-25]} {Dmel: FBgn0262582, cic, capicua, [RH, Score=103, Expect=5e-22]} {Celegans: WBGene00001560, gei-3, GEX Interacting protein, [RH, Score=103, Expect=3e-22]} {Smed: dd_Smed_v6_4601_0_1, dd_Smed_v6_4601_0_1, [RH, Score=103, Expect=3e-22]} {RNA1509_21240, RNA1509_23108, RNA1509_23279, RNA1509_31171} {RNA1310_3975.1, RNA1509_21240, RNA1509_23108, RNA1509_23279, RNA1509_31171} {RNA1509_21240, RNA1509_23108, RNA1509_23279, RNA1509_31171, RNA815_15826}
7.	MligTC455_52371	366	7.63	Mlig455_058035	Neo: - Age: -	ACBD3	0.958	-	-	-	-	-	0.958	Mlig455_058035 {REF} {Length: 2844} {TRANSSPLICED} {Pfam: Golgi-dynamics membrane-trafficking [PF13897.8, score=93.0]} {Human: ENSG00000182827, ACBD3, acyl-CoA binding domain containing 3, [Score=96.7, Expect=3e-22]} {Mouse: ENSMUSG00000026499, Acbd3, acyl-Coenzyme A binding domain containing 3, [Score=93.6, Expect=2e-21]} {Dmel: FBgn0031061, CG14232, [Score=98.6, Expect=3e-23]} {Celegans: WBGene00012765, Y41E3.7, [Score=122, Expect=5e-34]} {Smed: dd_Smed_v6_2498_0_1, dd_Smed_v6_2498_0_1, [Score=142, Expect=6e-41]} {RNA1509_14041} {RNA1310_22568} {RNA815_7615}
8.	MligTC455_23172	493	10.27	Mlig455_005040	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.433 Region-enriched R6: 1.479/0.02831	GRIA2	0.953	-	-	-	-	0.953	-	Mlig455_005040 {REF} {Length: 2083} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=85.9]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=68.8]; Ligand-gated ion channel [PF00060.28, score=65.0]} {Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=145, Expect=7e-37]; ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=139, Expect=7e-35]} {Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=145, Expect=5e-37]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=139, Expect=6e-35]} {Dmel: FBgn0038837, CG3822, [Score=119, Expect=2e-28]} {Celegans: WBGene00001617, glr-6, GLutamate Receptor family (AMPA), [Score=122, Expect=1e-29]} {Smed: dd_Smed_v6_7562_0_1, dd_Smed_v6_7562_0_1, [Score=126, Expect=4e-31]} {RNA1509_11251} {RNA1310_37359} {RNA815_2128.1}

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