M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25355

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25355 4027 83.90 Mlig455_027278, Mlig455_027296

Neo: -

Age: -

 TMEM248

Mlig455_027278 {REF} {Length: 1926} {TRANSSPLICED} {Pfam: Transmembrane 219 [PF14940.8, score=105.2]} {Human: ENSG00000106609, TMEM248, transmembrane protein 248, [RH, Score=88.2, Expect=4e-19]} {Mouse: ENSMUSG00000053094, Tmem248, transmembrane protein 248, [RH, Score=92.8, Expect=7e-21]} {Smed: dd_Smed_v6_3828_0_1, dd_Smed_v6_3828_0_1, [RH, Score=100, Expect=2e-24]} {RNA1509_44054} {RNA1310_17470} {RNA815_6942.1}

Mlig455_027296 {REF} {Length: 1782} {TRANSSPLICED} {Pfam: Transmembrane 219 [PF14940.8, score=105.0]} {Human: ENSG00000106609, TMEM248, transmembrane protein 248, [RH, Score=87.0, Expect=1e-18]} {Mouse: ENSMUSG00000053094, Tmem248, transmembrane protein 248, [RH, Score=91.7, Expect=2e-20]} {Smed: dd_Smed_v6_3828_0_1, dd_Smed_v6_3828_0_1, [RH, Score=100, Expect=2e-24]} {RNA1509_13170, RNA1509_42559, RNA1509_44054} {RNA1310_17470, RNA1509_13170, RNA1509_42559, RNA1509_44054} {RNA1509_13170, RNA1509_42559, RNA1509_44054, RNA815_6942.1}

Cumulative graph for MligTC455_25355

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.418 6.521 0.40907 1.00000
RegionR2 -0.166 6.521 0.58880 0.94273
RegionR3 0.357 6.521 0.14843 0.65446
RegionR4 0.21 6.521 0.45515 0.78370
RegionR5 0.285 6.521 0.21931 0.52077
RegionR6 0.113 6.521 0.65128 1.00000
RegionR7 0.334 6.521 0.21369 0.83016
RegionR8 -0.717 6.521 0.04709 0.42573

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.683 6.521 0.04380 0.67773
RegenerationR2 0.317 6.521 0.28121 0.72482
RegenerationR3 0.072 6.521 0.81422 0.98603
RegenerationR4 -0.07 6.521 0.82446 0.99545
RegenerationR5 -0.033 6.521 0.91198 1.00000
RegenerationR6 -0.024 6.521 0.93874 1.00000
RegenerationBL 0.11 6.521 0.71858 1.00000
RegenerationTP -0.004 6.521 0.98966 1.00000


Genes with expression patterns similar to MligTC455_25355

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25355 4027 83.9 Mlig455_027278, Mlig455_027296

Neo: -

Age: -

 TMEM248 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_027278 {REF} {Length: 1926} {TRANSSPLICED} {Pfam: Transmembrane 219 [PF14940.8, score=105.2]} {Human: ENSG00000106609, TMEM248, transmembrane protein 248, [RH, Score=88.2, Expect=4e-19]} {Mouse: ENSMUSG00000053094, Tmem248, transmembrane protein 248, [RH, Score=92.8, Expect=7e-21]} {Smed: dd_Smed_v6_3828_0_1, dd_Smed_v6_3828_0_1, [RH, Score=100, Expect=2e-24]} {RNA1509_44054} {RNA1310_17470} {RNA815_6942.1}

Mlig455_027296 {REF} {Length: 1782} {TRANSSPLICED} {Pfam: Transmembrane 219 [PF14940.8, score=105.0]} {Human: ENSG00000106609, TMEM248, transmembrane protein 248, [RH, Score=87.0, Expect=1e-18]} {Mouse: ENSMUSG00000053094, Tmem248, transmembrane protein 248, [RH, Score=91.7, Expect=2e-20]} {Smed: dd_Smed_v6_3828_0_1, dd_Smed_v6_3828_0_1, [RH, Score=100, Expect=2e-24]} {RNA1509_13170, RNA1509_42559, RNA1509_44054} {RNA1310_17470, RNA1509_13170, RNA1509_42559, RNA1509_44054} {RNA1509_13170, RNA1509_42559, RNA1509_44054, RNA815_6942.1}
2. MligTC455_19512 2938 61.2 Mlig455_060635

Neo: -

Age: logFC(26M/2M)=-1.445

 CIAO2B 3.125 0.738 - 0.709 - 0.726 0.952 Mlig455_060635 {REF} {Length: 1171} {TRANSSPLICED} {Pfam: Iron-sulfur cluster assembly protein [PF01883.21, score=62.2]} {Human: ENSG00000166595, CIAO2B, cytosolic iron-sulfur assembly component 2B, [RH, Score=221, Expect=1e-74]} {Mouse: ENSMUSG00000031879, Ciao2b, cytosolic iron-sulfur assembly component 2B, [RH, Score=221, Expect=8e-75]} {Dmel: FBgn0036107, galla-2, [RH, Score=201, Expect=3e-67]} {Celegans: WBGene00009736, F45G2.10, MIP18 family protein F45G2.10, [RH, Score=171, Expect=2e-55]} {Smed: dd_Smed_v6_6658_0_1, dd_Smed_v6_6658_0_1, [RH, Score=146, Expect=1e-45]} {RNA1509_20293, RNA1509_22139, RNA1509_5597} {RNA1310_35958, RNA1509_20293, RNA1509_22139, RNA1509_5597} {RNA1509_20293, RNA1509_22139, RNA1509_5597, RNA815_16072}
3. MligTC455_36916 558 11.63 Mlig455_010676

Neo: -

Age: Up-Down-Down

 APAF1 1.776 - - 0.812 - - 0.964 Mlig455_010676 {REF} {Length: 6152} {TRANSSPLICED} {Pfam: NB-ARC domain [PF00931.24, score=61.2]; APAF-1 helical domain [PF17908.3, score=23.9]; Caspase recruitment domain [PF00619.23, score=22.5]} {Human: ENSG00000120868, APAF1, apoptotic peptidase activating factor 1, [Score=166, Expect=7e-41]} {Mouse: ENSMUSG00000019979, Apaf1, apoptotic peptidase activating factor 1, [Score=182, Expect=5e-46]} {RNA1509_15475, RNA1509_30666, RNA1509_3106} {RNA1310_1478, RNA1509_15475, RNA1509_30666} {RNA1509_15475, RNA1509_30666, RNA815_415}
4. MligTC455_34297 1817 37.86 Mlig455_065126

Neo: -

Age: -

Region-enriched R5: 1.122/0.00001

 EIF5B 0.965 - - - - - 0.965 Mlig455_065126 {REF} {Length: 4850} {TRANSSPLICED} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=114.8]; Translation-initiation factor 2 [PF11987.10, score=71.4]; Elongation factor Tu domain 2 [PF03144.27, score=51.2]; Elongation factor Tu domain 4 [PF14578.8, score=47.0]; 50S ribosome-binding GTPase [PF01926.25, score=33.8]; Conserved hypothetical ATP binding protein [PF03029.19, score=25.3]; Cwf15/Cwc15 cell cycle control protein [PF04889.14, score=25.0]} {Human: ENSG00000158417, EIF5B, eukaryotic translation initiation factor 5B, [RH, Score=839, Expect=0.0]} {Mouse: ENSMUSG00000026083, Eif5b, eukaryotic translation initiation factor 5B, [RH, Score=833, Expect=0.0]} {Dmel: FBgn0026259, eIF5B, eukaryotic translation initiation factor 5B, [RH, Score=807, Expect=0.0]} {Celegans: WBGene00021857, iffb-1, Eukaryotic translation initiation factor eIF5B; Initiation Factor Five B (eIF5B), [RH, Score=764, Expect=0.0]} {Smed: dd_Smed_v6_1274_1_1, dd_Smed_v6_1274_1_1, [RH, Score=671, Expect=0.0]} {RNA1509_31809, RNA1509_41391, RNA1509_46822, RNA1509_59282, RNA1509_59486, RNA1509_7171} {RNA1310_3913.1, RNA1509_31809, RNA1509_41391, RNA1509_46822, RNA1509_59282, RNA1509_59486} {RNA1509_31809, RNA1509_41391, RNA1509_46822, RNA1509_59282, RNA1509_59486, RNA815_1112}
5. MligTC455_46680 458 9.54 Mlig455_017299, Mlig455_045282

Neo: -

Age: -

 ZNF346 0.964 - - - - - 0.964

Mlig455_017299 {REF} {Length: 2217} {TRANSSPLICED} {Pfam: Zinc-finger of C2H2 type [PF12874.9, score=65.5]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=30.3]; U1 zinc finger [PF06220.14, score=22.1]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=19.5]; TUTase nucleotidyltransferase domain [PF19088.2, score=18.2]} {Human: ENSG00000113761, ZNF346, zinc finger protein 346, [RH, Score=59.7, Expect=3e-09]} {Mouse: ENSMUSG00000027663, Zmat3, zinc finger matrin type 3, [RH, Score=51.6, Expect=1e-06]} {Dmel: FBgn0032276, CG17098, [RH, Score=50.4, Expect=3e-06]} {Smed: dd_Smed_v6_1859_0_1, dd_Smed_v6_1859_0_1, [RH, Score=91.3, Expect=2e-19]} {RNA1509_39555} {RNA1310_16920.1} {RNA815_11674}

Mlig455_045282 {REF} {Length: 2218} {TRANSSPLICED} {Pfam: Zinc-finger of C2H2 type [PF12874.9, score=62.9]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=26.9]; U1 zinc finger [PF06220.14, score=22.4]; TUTase nucleotidyltransferase domain [PF19088.2, score=17.9]} {Human: ENSG00000113761, ZNF346, zinc finger protein 346, [RH, Score=59.7, Expect=3e-09]} {Mouse: ENSMUSG00000027663, Zmat3, zinc finger matrin type 3, [RH, Score=52.4, Expect=5e-07]} {Dmel: FBgn0032276, CG17098, [RH, Score=50.1, Expect=4e-06]} {Smed: dd_Smed_v6_1859_0_1, dd_Smed_v6_1859_0_1, [RH, Score=91.3, Expect=2e-19]} {RNA1509_39555} {RNA1310_16920.1} {RNA815_11674}
6. MligTC455_37098 996 20.75 Mlig455_012279

Neo: Neoblast

Age: Up-Down-Up, logFC(26M/2M)=0.528

Region-enriched R4: 1.139/0.02113

 0.96 - - - - - 0.960 Mlig455_012279 {REF} {Length: 197} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_15555} {RNA1310_36361.1} {RNA815_342.1}
7. MligTC455_32772 3510 73.13 Mlig455_056555

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.343

Region-enriched R4: 1.329/0.00011

 NDUFS6 0.953 - - - - - 0.953 Mlig455_056555 {REF} {Length: 1057} {Pfam: Zinc-finger domain [PF10276.11, score=61.2]} {Human: ENSG00000145494, NDUFS6, NADH:ubiquinone oxidoreductase subunit S6, [RH, Score=92.0, Expect=6e-23]} {Mouse: ENSMUSG00000021606, Ndufs6, NADH:ubiquinone oxidoreductase core subunit S6, [RH, Score=88.6, Expect=5e-22]} {Dmel: FBgn0031684, ND-13A, NADH dehydrogenase (ubiquinone) 13 kDa A subunit, [Score=112, Expect=3e-31]} {Celegans: WBGene00009051, nduf-6, Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial, [RH, Score=99.8, Expect=3e-26]} {RNA1509_1855} {RNA1310_51943} {RNA815_28076}
8. MligTC455_38501 1061 22.11 Mlig455_061988, Mlig455_063676

Neo: -

Age: -

 0.952 - - - - - 0.952

Mlig455_061988 {REF} {Length: 1545} {NoTransDecoderORF} {RNA1509_43957} {RNA1310_14043} {RNA815_37878}

Mlig455_063676 {REF} {Length: 2011} {TRANSSPLICED} {Pfam: Putative transmembrane protein 170 [PF10190.11, score=58.9]} {Dmel: FBgn0033550, CG12341, [RH, Score=49.3, Expect=3e-08]} {RNA1509_15536, RNA1509_55125} {RNA1310_19985, RNA1509_15536, RNA1509_55125} {RNA1509_15536, RNA1509_55125, RNA815_9959.1}
9. MligTC455_17496 1605 33.45 Mlig455_004985

Neo: -

Age: logFC(26M/2M)=0.314

 SLC25A21 0.951 - - - 0.951 - - Mlig455_004985 {REF} {Length: 2105} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=55.4]} {Human: ENSG00000183032, SLC25A21, solute carrier family 25 member 21, [Score=112, Expect=5e-27]} {Mouse: ENSMUSG00000035472, Slc25a21, solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21, [Score=114, Expect=6e-28]} {Dmel: FBgn0040383, CG5254, [Score=114, Expect=1e-28]} {Celegans: WBGene00011226, slc-25A21, SLC (SoLute Carrier) homolog, [Score=94.4, Expect=2e-21]} {Smed: dd_Smed_v6_8768_0_1, dd_Smed_v6_8768_0_1, [Score=54.3, Expect=6e-08]} {RNA1509_12813, RNA1509_18164} {RNA1310_19382, RNA1509_18164} {RNA1509_18164, RNA815_8848}
10. MligTC455_44976 1642 34.21 Mlig455_017628, Mlig455_058949

Neo: -

Age: -

 MBD2 0.951 - - - - - 0.951

Mlig455_017628 {REF} {Length: 1787} {TRANSSPLICED} {Pfam: Methyl-CpG binding domain [PF01429.21, score=46.2]; p55-binding region of Methyl-CpG-binding domain proteins MBD [PF16564.7, score=44.3]} {Human: ENSG00000134046, MBD2, methyl-CpG binding domain protein 2, [RH, Score=105, Expect=5e-25]} {Mouse: ENSMUSG00000024513, Mbd2, methyl-CpG binding domain protein 2, [RH, Score=103, Expect=2e-24]} {Dmel: FBgn0027950, MBD-like, Methyl-CpG binding domain protein-like, [Score=63.5, Expect=2e-11]} {Smed: dd_Smed_v6_3054_0_1, dd_Smed_v6_3054_0_1, [RH, Score=112, Expect=1e-28]} {RNA1509_13423} {RNA1310_17400, RNA1509_13423} {RNA1509_13423, RNA815_28964}

Mlig455_058949 {REF} {Length: 1929} {TRANSSPLICED} {Pfam: C-terminal domain of methyl-CpG binding protein 2 and 3 [PF14048.8, score=62.7]; Methyl-CpG binding domain [PF01429.21, score=46.0]; p55-binding region of Methyl-CpG-binding domain proteins MBD [PF16564.7, score=44.3]} {Human: ENSG00000134046, MBD2, methyl-CpG binding domain protein 2, [RH, Score=150, Expect=2e-41]} {Mouse: ENSMUSG00000024513, Mbd2, methyl-CpG binding domain protein 2, [RH, Score=148, Expect=9e-41]} {Dmel: FBgn0027950, MBD-like, Methyl-CpG binding domain protein-like, [RH, Score=108, Expect=9e-28]} {Smed: dd_Smed_v6_3054_0_1, dd_Smed_v6_3054_0_1, [RH, Score=158, Expect=3e-46]} {RNA1509_13423, RNA1509_36729} {RNA1310_17400, RNA1509_36729} {RNA1509_36729, RNA815_28964}
11. MligTC455_36523 651 13.56 Mlig455_065015

Neo: -

Age: -

Region-enriched R4: 1.607/0.01300
Region-enriched R5: 1.331/0.00443

 NSUN6 0.95 - - - - - 0.950 Mlig455_065015 {REF} {Length: 1430} {TRANSSPLICED} {Pfam: 16S rRNA methyltransferase RsmB/F [PF01189.19, score=138.3]; Methyltransferase domain [PF13847.8, score=30.3]; Methyltransferase domain [PF13649.8, score=23.0]; FtsJ-like methyltransferase [PF01728.21, score=22.0]} {Human: ENSG00000241058, NSUN6, NOP2/Sun RNA methyltransferase family member 6, [RH, Score=235, Expect=5e-72]} {Mouse: ENSMUSG00000026707, Nsun6, NOL1/NOP2/Sun domain family member 6, [RH, Score=240, Expect=2e-74]} {Dmel: FBgn0037200, CG11109, [RH, Score=223, Expect=5e-68]} {Celegans: WBGene00021073, nol-1, NucleOLar protein, [Score=100, Expect=3e-23]} {Smed: dd_Smed_v6_7417_0_1, dd_Smed_v6_7417_0_1, [Score=94.0, Expect=1e-20]} {RNA1509_49777, RNA1509_55738} {RNA1310_22308, RNA1509_49777, RNA1509_55738} {RNA1509_49777, RNA1509_55738, RNA815_9963}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA