M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25365

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25365 19 0.39 Mlig455_022363, Mlig455_043127

Neo: -

Age: -

 KMT2C

Mlig455_022363 {REF} {Length: 870} {Pfam: MULE transposase domain [PF10551.11, score=22.7]} {Smed: dd_Smed_v6_40199_0_2, dd_Smed_v6_40199_0_2, [Score=65.5, Expect=1e-13]} {RNA1310_16179.1} {RNA815_14698}

Mlig455_043127 {REF} {Length: 3525} {Pfam: MULE transposase domain [PF10551.11, score=47.4]; FLYWCH zinc finger domain [PF04500.18, score=35.3]; PHD-finger [PF00628.31, score=21.1]} {Human: ENSG00000055609, KMT2C, lysine methyltransferase 2C, [Score=53.1, Expect=2e-06]} {Smed: dd_Smed_v6_40199_0_1, dd_Smed_v6_40199_0_1, [RH, Score=87.0, Expect=3e-20]} {RNA1310_16179.1} {RNA815_14698}

Cumulative graph for MligTC455_25365

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.867 0.917 0.99979 1.00000
RegionR2 3.314 0.917 0.16219 0.50413
RegionR3 0.431 0.917 0.99660 1.00000
RegionR4 -0.047 0.917 0.99971 1.00000
RegionR5 -1.152 0.917 0.99971 1.00000
RegionR6 -1.377 0.917 1.00000 1.00000
RegionR7 0.811 0.917 0.99988 1.00000
RegionR8 0.886 0.917 0.99991 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.757 0.917 0.99983 1.00000
RegenerationR2 3.621 0.917 0.00316 0.08589
RegenerationR3 4.201 0.917 0.03702 0.34020
RegenerationR4 2.043 0.917 0.09828 0.48659
RegenerationR5 3.939 0.917 0.02054 0.24817
RegenerationR6 3.503 0.917 0.04451 0.26376
RegenerationBL 0.63 0.917 0.99981 1.00000
RegenerationTP 0.793 0.917 0.99977 1.00000


Genes with expression patterns similar to MligTC455_25365

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25365 19 0.39 Mlig455_022363, Mlig455_043127

Neo: -

Age: -

 KMT2C 3 1.000 - - - 1.000 1.000

Mlig455_022363 {REF} {Length: 870} {Pfam: MULE transposase domain [PF10551.11, score=22.7]} {Smed: dd_Smed_v6_40199_0_2, dd_Smed_v6_40199_0_2, [Score=65.5, Expect=1e-13]} {RNA1310_16179.1} {RNA815_14698}

Mlig455_043127 {REF} {Length: 3525} {Pfam: MULE transposase domain [PF10551.11, score=47.4]; FLYWCH zinc finger domain [PF04500.18, score=35.3]; PHD-finger [PF00628.31, score=21.1]} {Human: ENSG00000055609, KMT2C, lysine methyltransferase 2C, [Score=53.1, Expect=2e-06]} {Smed: dd_Smed_v6_40199_0_1, dd_Smed_v6_40199_0_1, [RH, Score=87.0, Expect=3e-20]} {RNA1310_16179.1} {RNA815_14698}
2. MligTC455_32887 326 6.8 Mlig455_038614

Neo: Germline

Age: -

 1.809 0.840 - - - 0.969 - Mlig455_038614 {REF} {Length: 1336} {RNA1509_7781} {RNA1310_35841.1} {RNA815_17077}
3. MligTC455_37049 51 1.05 Mlig455_058261

Neo: -

Age: logFC(26M/2M)=-0.835

 0.989 - - - - 0.989 - Mlig455_058261 {REF} {Length: 1074} {RNA1509_52793} {RNA1310_10196, RNA1509_52793} {RNA1509_52793, RNA815_19033}
4. MligTC455_10462 6 0.13 Mlig455_059004

Neo: -

Age: -

 0.986 - - - - 0.986 - Mlig455_059004 {REF} {Length: 3424} {Pfam: Leucine rich repeat [PF13855.8, score=38.7]; Leucine Rich repeats (2 copies) [PF12799.9, score=36.5]; Leucine Rich repeat [PF13516.8, score=21.8]}
5. MligTC455_18800 26 0.55 Mlig455_031326

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_031326 {REF} {Length: 964} {TRANSSPLICED}
6. MligTC455_10182 9 0.18 Mlig455_046984

Neo: -

Age: -

 FCN2 0.968 - - - - 0.968 - Mlig455_046984 {REF} {Length: 2340} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=70.3]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=80.9, Expect=2e-16]} {Mouse: ENSMUSG00000026938, Fcna, ficolin A, [Score=70.1, Expect=7e-13]} {Dmel: FBgn0031804, CG9500, [Score=83.6, Expect=7e-18]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=56.2, Expect=2e-08]} {RNA1509_53291} {RNA1310_21728} {RNA815_9881}
7. MligTC455_25429 200 4.17 Mlig455_048296, Mlig455_048322, Mlig455_048339

Neo: -

Age: Up-Down-Down

 ARRDC2, ARRDC4 0.962 - - - - 0.962 -

Mlig455_048296 {REF} {Length: 4176} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=72.1]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=68.9]; Rgp1 [PF08737.12, score=20.6]} {Human: ENSG00000140450, ARRDC4, arrestin domain containing 4, [RH, Score=102, Expect=3e-23]} {Mouse: ENSMUSG00000042659, Arrdc4, arrestin domain containing 4, [RH, Score=103, Expect=1e-23]} {Dmel: FBgn0035103, Vdup1, Vitamin D[[3]] up-regulated protein 1, [RH, Score=115, Expect=3e-28]} {Celegans: WBGene00013043, arrd-16, ARRestin Domain protein, [Score=93.6, Expect=1e-20]} {Smed: dd_Smed_v6_8715_0_1, dd_Smed_v6_8715_0_1, [RH, Score=214, Expect=4e-64]} {RNA1509_38119} {RNA1310_8824} {RNA815_16520}

Mlig455_048322 {REF} {Length: 4514} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=73.1]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=68.6]; Rgp1 [PF08737.12, score=23.3]} {Human: ENSG00000105643, ARRDC2, arrestin domain containing 2, [RH, Score=114, Expect=1e-27]} {Mouse: ENSMUSG00000042659, Arrdc4, arrestin domain containing 4, [RH, Score=104, Expect=5e-24]} {Dmel: FBgn0035103, Vdup1, Vitamin D[[3]] up-regulated protein 1, [RH, Score=119, Expect=9e-30]} {Celegans: WBGene00011732, arrd-17, Arrestin domain-containing protein 17, [Score=106, Expect=7e-25]} {Smed: dd_Smed_v6_8715_0_1, dd_Smed_v6_8715_0_1, [RH, Score=217, Expect=4e-65]} {RNA1509_38119} {RNA1310_8824} {RNA815_16520}

Mlig455_048339 {REF} {Length: 3953} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=74.5]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=64.9]; Rgp1 [PF08737.12, score=23.7]} {Human: ENSG00000105643, ARRDC2, arrestin domain containing 2, [RH, Score=112, Expect=2e-26]} {Mouse: ENSMUSG00000042659, Arrdc4, arrestin domain containing 4, [RH, Score=105, Expect=2e-24]} {Dmel: FBgn0037465, CG1105, [Score=120, Expect=8e-30]} {Celegans: WBGene00011732, arrd-17, Arrestin domain-containing protein 17, [Score=103, Expect=9e-24]} {Smed: dd_Smed_v6_8715_0_1, dd_Smed_v6_8715_0_1, [RH, Score=213, Expect=2e-63]} {RNA1509_38119} {RNA1310_8824} {RNA815_16520}
8. MligTC455_13640 10 0.21 Mlig455_021951

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_021951 {REF} {Length: 209} {NoTransDecoderORF}
9. MligTC455_39926 16 0.33 Mlig455_019195

Neo: -

Age: -

Region-enriched R2: 10.215/0.00176

 0.957 - - - - 0.957 - Mlig455_019195 {REF} {Length: 1396} {TRANSSPLICED} {RNA1310_52751} {RNA815_26203}
10. MligTC455_01841 27 0.56 Mlig455_024468

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_024468 {REF} {Length: 4932} {RNA1310_133087} {RNA815_49443}
11. MligTC455_05748 55 1.14 Mlig455_030842

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_030842 {REF} {Length: 531} {RNA1509_15634} {RNA1310_60348} {RNA815_35182}
12. MligTC455_00471 11 0.24 Mlig455_019711

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_019711 {REF} {Length: 118} {NoTransDecoderORF} {RNA1509_44121} {RNA815_21965}
13. MligTC455_13832 178 3.71 Mlig455_065431

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_065431 {REF} {Length: 1865} {NoTransDecoderORF} {RNA1509_9010} {RNA1310_38702, RNA1509_9010} {RNA1509_9010, RNA815_4929.1}
14. MligTC455_10507 15 0.31 Mlig455_000011

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_000011 {REF} {Length: 1370} {RNA1509_48973} {RNA1310_38998.3} {RNA815_31898}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA