M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25465

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25465 217 4.53 Mlig455_003598, Mlig455_041570

Neo: -

Age: -

 KCNQ1

Mlig455_003598 {REF} {Length: 5007} {TRANSSPLICED} {Pfam: KCNQ voltage-gated potassium channel [PF03520.16, score=106.9]; Ion transport protein [PF00520.33, score=89.6]; Ion channel [PF07885.18, score=47.2]} {Human: ENSG00000053918, KCNQ1, potassium voltage-gated channel subfamily Q member 1, [RH, Score=591, Expect=0.0]} {Mouse: ENSMUSG00000009545, Kcnq1, potassium voltage-gated channel, subfamily Q, member 1, [RH, Score=601, Expect=0.0]} {Dmel: FBgn0033494, KCNQ, KCNQ potassium channel, [Score=455, Expect=3e-152]} {Celegans: WBGene00002235, kqt-3, KQT-3 potassium channel; Potassium channel, KvQLT family, [RH, Score=598, Expect=0.0]} {Smed: dd_Smed_v6_15923_0_6, dd_Smed_v6_15923_0_6, [RH, Score=631, Expect=0.0]} {RNA1509_6703} {RNA1310_10487} {RNA815_12701}

Mlig455_041570 {REF} {Length: 4511} {TRANSSPLICED} {Pfam: KCNQ voltage-gated potassium channel [PF03520.16, score=107.8]; Ion transport protein [PF00520.33, score=89.6]; Ion channel [PF07885.18, score=47.2]} {Human: ENSG00000053918, KCNQ1, potassium voltage-gated channel subfamily Q member 1, [RH, Score=590, Expect=0.0]} {Mouse: ENSMUSG00000009545, Kcnq1, potassium voltage-gated channel, subfamily Q, member 1, [RH, Score=600, Expect=0.0]} {Dmel: FBgn0033494, KCNQ, KCNQ potassium channel, [Score=454, Expect=8e-152]} {Celegans: WBGene00002235, kqt-3, KQT-3 potassium channel; Potassium channel, KvQLT family, [RH, Score=599, Expect=0.0]} {Smed: dd_Smed_v6_15923_0_1, dd_Smed_v6_15923_0_1, [RH, Score=648, Expect=0.0]} {RNA1509_6703} {RNA1310_10487, RNA1509_6703} {RNA1509_6703, RNA815_12701}

Cumulative graph for MligTC455_25465

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.492 2.802 0.79889 1.00000
RegionR2 0.524 2.802 0.45273 0.84026
RegionR3 0.336 2.802 0.49452 0.99132
RegionR4 -0.757 2.802 0.30778 0.62171
RegionR5 0.135 2.802 0.76622 1.00000
RegionR6 0.408 2.802 0.42695 0.99212
RegionR7 -0.599 2.802 0.43303 1.00000
RegionR8 0.445 2.802 0.58276 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.628 2.802 0.44039 1.00000
RegenerationR2 -0.035 2.802 0.94412 1.00000
RegenerationR3 -1.562 2.802 0.00925 0.17551
RegenerationR4 -0.523 2.802 0.43559 0.83401
RegenerationR5 -0.269 2.802 0.59873 0.90957
RegenerationR6 -0.312 2.802 0.58920 0.86312
RegenerationBL -5.725 2.802 0.00443 0.06068
RegenerationTP -1.708 2.802 0.09577 0.48493


Genes with expression patterns similar to MligTC455_25465

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25465 217 4.53 Mlig455_003598, Mlig455_041570

Neo: -

Age: -

 KCNQ1 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_003598 {REF} {Length: 5007} {TRANSSPLICED} {Pfam: KCNQ voltage-gated potassium channel [PF03520.16, score=106.9]; Ion transport protein [PF00520.33, score=89.6]; Ion channel [PF07885.18, score=47.2]} {Human: ENSG00000053918, KCNQ1, potassium voltage-gated channel subfamily Q member 1, [RH, Score=591, Expect=0.0]} {Mouse: ENSMUSG00000009545, Kcnq1, potassium voltage-gated channel, subfamily Q, member 1, [RH, Score=601, Expect=0.0]} {Dmel: FBgn0033494, KCNQ, KCNQ potassium channel, [Score=455, Expect=3e-152]} {Celegans: WBGene00002235, kqt-3, KQT-3 potassium channel; Potassium channel, KvQLT family, [RH, Score=598, Expect=0.0]} {Smed: dd_Smed_v6_15923_0_6, dd_Smed_v6_15923_0_6, [RH, Score=631, Expect=0.0]} {RNA1509_6703} {RNA1310_10487} {RNA815_12701}

Mlig455_041570 {REF} {Length: 4511} {TRANSSPLICED} {Pfam: KCNQ voltage-gated potassium channel [PF03520.16, score=107.8]; Ion transport protein [PF00520.33, score=89.6]; Ion channel [PF07885.18, score=47.2]} {Human: ENSG00000053918, KCNQ1, potassium voltage-gated channel subfamily Q member 1, [RH, Score=590, Expect=0.0]} {Mouse: ENSMUSG00000009545, Kcnq1, potassium voltage-gated channel, subfamily Q, member 1, [RH, Score=600, Expect=0.0]} {Dmel: FBgn0033494, KCNQ, KCNQ potassium channel, [Score=454, Expect=8e-152]} {Celegans: WBGene00002235, kqt-3, KQT-3 potassium channel; Potassium channel, KvQLT family, [RH, Score=599, Expect=0.0]} {Smed: dd_Smed_v6_15923_0_1, dd_Smed_v6_15923_0_1, [RH, Score=648, Expect=0.0]} {RNA1509_6703} {RNA1310_10487, RNA1509_6703} {RNA1509_6703, RNA815_12701}
2. MligTC455_25466 97 2.02 Mlig455_041572

Neo: -

Age: -

 5.74 0.968 0.984 0.996 0.974 0.821 0.997 Mlig455_041572 {REF} {Length: 356} {NoTransDecoderORF} {RNA1310_46869} {RNA815_14926.1}
3. MligTC455_40540 101 2.1 Mlig455_049420

Neo: -

Age: -

 0.971 - - - - - 0.971 Mlig455_049420 {REF} {Length: 1518} {RNA1509_51442, RNA1509_56446} {RNA1310_39000.1, RNA1509_51442, RNA1509_56446} {RNA1509_51442, RNA1509_56446, RNA815_20434.1}
4. MligTC455_18464 256 5.33 Mlig455_020539, Mlig455_020588

Neo: Int S/G2/M

Age: -

Region-enriched R2: 3.330/0.03622

 NUBPL 0.967 - - 0.967 - - -

Mlig455_020539 {REF} {Length: 2078} {TRANSSPLICED} {Pfam: NUBPL iron-transfer P-loop NTPase [PF10609.11, score=251.8]; CobQ/CobB/MinD/ParA nucleotide binding domain [PF01656.25, score=57.8]; AAA domain [PF13614.8, score=37.5]; ATPase MipZ [PF09140.13, score=31.0]; Anion-transporting ATPase [PF02374.17, score=22.8]; 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family [PF00142.20, score=19.7]; Formate--tetrahydrofolate ligase [PF01268.21, score=17.4]} {Human: ENSG00000151413, NUBPL, nucleotide binding protein like, [Score=195, Expect=7e-60]} {Mouse: ENSMUSG00000035142, Nubpl, nucleotide binding protein-like, [RH, Score=192, Expect=5e-59]} {Dmel: FBgn0032986, CG3262, [RH, Score=180, Expect=2e-54]} {Celegans: WBGene00008664, nubp-1, Cytosolic Fe-S cluster assembly factor NUBP1 homolog, [Score=146, Expect=1e-41]} {Smed: dd_Smed_v6_9289_0_1, dd_Smed_v6_9289_0_1, [RH, Score=180, Expect=7e-55]} {RNA1509_41242} {RNA1310_30409} {RNA815_55932}

Mlig455_020588 {REF} {Length: 1966} {Pfam: NUBPL iron-transfer P-loop NTPase [PF10609.11, score=20.7]} {RNA1509_41242} {RNA1310_30409} {RNA815_55932}
5. MligTC455_42583 148 3.09 Mlig455_006623

Neo: -

Age: Up-Down-Down

 MOSPD1 0.965 - - - - - 0.965 Mlig455_006623 {REF} {Length: 2507} {TRANSSPLICED} {Pfam: MSP (Major sperm protein) domain [PF00635.28, score=49.6]} {Human: ENSG00000101928, MOSPD1, motile sperm domain containing 1, [RH, Score=93.6, Expect=1e-22]} {Mouse: ENSMUSG00000023074, Mospd1, motile sperm domain containing 1, [RH, Score=95.5, Expect=2e-23]} {RNA1509_17503} {RNA1310_37601, RNA1509_17503} {RNA1509_17503, RNA815_17755}
6. MligTC455_30954 175 3.64 Mlig455_014321

Neo: -

Age: -

 PIK3R1 0.962 - - - - - 0.962 Mlig455_014321 {REF} {Length: 6805} {TRANSSPLICED} {Pfam: SH2 domain [PF00017.26, score=72.2]; RhoGAP domain [PF00620.29, score=57.8]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=39.4]; KIAA1045 RING finger [PF16744.7, score=22.3]} {Human: ENSG00000145675, PIK3R1, phosphoinositide-3-kinase regulatory subunit 1, [RH, Score=150, Expect=1e-36]} {Mouse: ENSMUSG00000028698, Pik3r3, phosphoinositide-3-kinase regulatory subunit 3, [RH, Score=140, Expect=9e-35]; ENSMUSG00000111410, Gm49337, predicted gene, 49337, [RH, Score=140, Expect=2e-34]; ENSMUSG00000041417, Pik3r1, phosphoinositide-3-kinase regulatory subunit 1, [RH, Score=136, Expect=2e-32]; ENSMUSG00000111826, Pik3r2, phosphoinositide-3-kinase regulatory subunit 2, [RH, Score=133, Expect=2e-31]; ENSMUSG00000031834, Pik3r2, phosphoinositide-3-kinase regulatory subunit 2, [RH, Score=133, Expect=2e-31]} {Dmel: FBgn0020622, Pi3K21B, [RH, Score=98.6, Expect=5e-21]} {Celegans: WBGene00000001, aap-1, Phosphoinositide 3-kinase adapter subunit; Phosphoinositide kinase AdAPter subunit, [RH, Score=85.5, Expect=6e-17]} {Smed: dd_Smed_v6_4794_0_2, dd_Smed_v6_4794_0_2, [RH, Score=191, Expect=1e-49]} {RNA1509_10178} {RNA1310_3553} {RNA815_1465}
7. MligTC455_42291 32 0.67 Mlig455_048550

Neo: -

Age: -

 0.959 - - - - - 0.959 Mlig455_048550 {REF} {Length: 2571} {NoTransDecoderORF} {RNA1509_47422} {RNA1310_16235.1} {RNA815_16690}
8. MligTC455_26392 64 1.33 Mlig455_001758

Neo: -

Age: -

Region-enriched R4: 4.334/0.04740

 PLD1 0.956 - - 0.956 - - - Mlig455_001758 {REF} {Length: 4484} {Pfam: PLD-like domain [PF13091.8, score=36.1]; Phospholipase D Active site motif [PF00614.24, score=31.9]} {Human: ENSG00000075651, PLD1, phospholipase D1, [RH, Score=290, Expect=1e-86]} {Mouse: ENSMUSG00000027695, Pld1, phospholipase D1, [RH, Score=296, Expect=7e-89]} {Dmel: FBgn0033075, Pld, Phospholipase D, [RH, Score=241, Expect=1e-68]} {Celegans: WBGene00004040, pld-1, PhosphoLipase D; Phospholipase D, [RH, Score=248, Expect=9e-71]} {Smed: dd_Smed_v6_61149_0_1, dd_Smed_v6_61149_0_1, [RH, Score=247, Expect=2e-76]} {RNA1509_57028} {RNA1310_1982, RNA1509_57028} {RNA1509_57028, RNA815_17806}
9. MligTC455_40245 125 2.61 Mlig455_045020

Neo: -

Age: -

Region-enriched R8: 2.724/0.00842

 0.956 - - - - 0.956 - Mlig455_045020 {REF} {Length: 4797} {RNA1509_7608} {RNA1310_23716} {RNA815_45025.1}
10. MligTC455_16305 45 0.93 Mlig455_005717

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_005717 {REF} {Length: 1504} {Pfam: Protein of unknown function (DUF4532) [PF15046.8, score=28.1]} {RNA1310_54208} {RNA815_57875}
11. MligTC455_37383 359 7.48 Mlig455_024630

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_024630 {REF} {Length: 2395} {Pfam: Osteopetrosis-associated transmembrane protein 1 precursor [PF09777.11, score=133.8]} {RNA1509_46891} {RNA1310_17332, RNA1509_46891} {RNA1509_46891, RNA815_13588}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA