TomoSeq data search

Data search

Results for MligTC455_25574

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_25574	775	16.14	Mlig455_024667	Neo: - Age: - Region-enriched R5: 1.111/0.00251		Mlig455_024667 {REF} {Length: 1967} {TRANSSPLICED} {Pfam: TMEM192 family [PF14802.8, score=47.2]} {RNA1509_15038, RNA1509_46730, RNA1509_54271} {RNA1310_13568, RNA1509_15038, RNA1509_54271} {RNA1509_15038, RNA1509_54271, RNA815_4933.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_25574

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-3.1	4.339	0.03104	0.44893
RegionR2	0.165	4.339	0.70797	1.00000
RegionR3	0.418	4.339	0.25120	0.79547
RegionR4	0.118	4.339	0.76691	1.00000
RegionR5	1.111	4.339	0.00017	0.00251
RegionR6	0.986	4.339	0.00353	0.08735
RegionR7	0.314	4.339	0.51531	1.00000
RegionR8	-0.013	4.339	0.98988	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	2.132	4.339	0.28948	0.98735
RegenerationR2	-0.21	4.339	0.47253	0.85874
RegenerationR3	-0.1	4.339	0.75030	0.96501
RegenerationR4	0.237	4.339	0.44903	0.84121
RegenerationR5	-0.27	4.339	0.30342	0.73061
RegenerationR6	-0.409	4.339	0.18600	0.52223
RegenerationBL	-0.425	4.339	0.34058	0.70739
RegenerationTP	0.096	4.339	0.84109	1.00000

Genes with expression patterns similar to MligTC455_25574

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_25574	775	16.14	Mlig455_024667	Neo: - Age: - Region-enriched R5: 1.111/0.00251		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_024667 {REF} {Length: 1967} {TRANSSPLICED} {Pfam: TMEM192 family [PF14802.8, score=47.2]} {RNA1509_15038, RNA1509_46730, RNA1509_54271} {RNA1310_13568, RNA1509_15038, RNA1509_54271} {RNA1509_15038, RNA1509_54271, RNA815_4933.1}
2.	MligTC455_31129	1008	21	Mlig455_005615, Mlig455_070184	Neo: Irradiation Age: logFC(26M/2M)=0.545 Region-specific R5: 1.527 Region-enriched R5: 1.021/0.00725	LIG4	2.475	-	0.755	-	0.955	-	0.765	Mlig455_005615 {REF} {Length: 3975} {Pfam: ATP dependent DNA ligase domain [PF01068.23, score=124.6]; DNA ligase N terminus [PF04675.16, score=70.9]; ATP dependent DNA ligase C terminal region [PF04679.17, score=58.5]; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=57.1]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=42.4]; RNA ligase [PF09414.12, score=29.0]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=28.6]} {Human: ENSG00000174405, LIG4, DNA ligase 4, [Score=546, Expect=2e-178]} {Mouse: ENSMUSG00000049717, Lig4, ligase IV, DNA, ATP-dependent, [Score=541, Expect=7e-177]} {Dmel: FBgn0030506, Lig4, Ligase4, [Score=214, Expect=4e-57]} {Celegans: WBGene00002986, lig-4, LIGase, [RH, Score=127, Expect=1e-29]} {Smed: dd_Smed_v6_11363_0_1, dd_Smed_v6_11363_0_1, [Score=504, Expect=6e-163]} {RNA1509_4940} {RNA1310_2815} {RNA815_3459} Mlig455_070184 {REF} {Length: 3787} {TRANSSPLICED} {Pfam: ATP dependent DNA ligase domain [PF01068.23, score=124.6]; DNA ligase N terminus [PF04675.16, score=120.6]; ATP dependent DNA ligase C terminal region [PF04679.17, score=58.3]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=42.6]; RNA ligase [PF09414.12, score=29.1]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=28.1]} {Human: ENSG00000174405, LIG4, DNA ligase 4, [RH, Score=648, Expect=0.0]} {Mouse: ENSMUSG00000049717, Lig4, ligase IV, DNA, ATP-dependent, [RH, Score=643, Expect=0.0]} {Dmel: FBgn0030506, Lig4, Ligase4, [RH, Score=253, Expect=3e-70]} {Celegans: WBGene00002985, lig-1, DNA ligase 1, [Score=134, Expect=7e-32]} {Smed: dd_Smed_v6_11363_0_1, dd_Smed_v6_11363_0_1, [RH, Score=566, Expect=0.0]} {RNA1509_4940} {RNA1310_2815, RNA1509_4940} {RNA1509_4940, RNA815_3459}
3.	MligTC455_45764	930	19.37	Mlig455_050557	Neo: - Age: - Region-enriched R4: 1.852/0.01043	ZMIZ1	0.95	-	-	-	0.950	-	-	Mlig455_050557 {REF} {Length: 1882} {TRANSSPLICED} {Pfam: MIZ/SP-RING zinc finger [PF02891.22, score=75.5]; Zinc-finger of the MIZ type in Nse subunit [PF11789.10, score=19.3]} {Human: ENSG00000108175, ZMIZ1, zinc finger MIZ-type containing 1, [RH, Score=264, Expect=1e-77]; ENSG00000122515, ZMIZ2, zinc finger MIZ-type containing 2, [RH, Score=263, Expect=6e-78]} {Mouse: ENSMUSG00000007817, Zmiz1, zinc finger, MIZ-type containing 1, [RH, Score=263, Expect=1e-77]; ENSMUSG00000041164, Zmiz2, zinc finger, MIZ-type containing 2, [RH, Score=263, Expect=4e-78]} {Dmel: FBgn0026160, tna, tonalli, [RH, Score=243, Expect=3e-70]} {Celegans: WBGene00001574, gei-17, E3 SUMO-protein ligase gei-17, [Score=82.8, Expect=1e-16]} {Smed: dd_Smed_v6_10016_0_1, dd_Smed_v6_10016_0_1, [RH, Score=119, Expect=3e-28]} {RNA1509_52556} {RNA1310_13483} {RNA815_5821}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_25574

775

16.14

Mlig455_024667

Neo: -

Age: -

Region-enriched R5: 1.111/0.00251

1.000

MligTC455_31129

1008

Mlig455_005615, Mlig455_070184

Neo: Irradiation

Age: logFC(26M/2M)=0.545

Region-specific R5: 1.527

Region-enriched R5: 1.021/0.00725

LIG4

2.475

0.755

0.955

0.765

Mlig455_005615 {REF} {Length: 3975} {Pfam: ATP dependent DNA ligase domain [PF01068.23, score=124.6]; DNA ligase N terminus [PF04675.16, score=70.9]; ATP dependent DNA ligase C terminal region [PF04679.17, score=58.5]; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=57.1]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=42.4]; RNA ligase [PF09414.12, score=29.0]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=28.6]} {Human: ENSG00000174405, LIG4, DNA ligase 4, [Score=546, Expect=2e-178]} {Mouse: ENSMUSG00000049717, Lig4, ligase IV, DNA, ATP-dependent, [Score=541, Expect=7e-177]} {Dmel: FBgn0030506, Lig4, Ligase4, [Score=214, Expect=4e-57]} {Celegans: WBGene00002986, lig-4, LIGase, [RH, Score=127, Expect=1e-29]} {Smed: dd_Smed_v6_11363_0_1, dd_Smed_v6_11363_0_1, [Score=504, Expect=6e-163]} {RNA1509_4940} {RNA1310_2815} {RNA815_3459}

Mlig455_070184 {REF} {Length: 3787} {TRANSSPLICED} {Pfam: ATP dependent DNA ligase domain [PF01068.23, score=124.6]; DNA ligase N terminus [PF04675.16, score=120.6]; ATP dependent DNA ligase C terminal region [PF04679.17, score=58.3]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=42.6]; RNA ligase [PF09414.12, score=29.1]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=28.1]} {Human: ENSG00000174405, LIG4, DNA ligase 4, [RH, Score=648, Expect=0.0]} {Mouse: ENSMUSG00000049717, Lig4, ligase IV, DNA, ATP-dependent, [RH, Score=643, Expect=0.0]} {Dmel: FBgn0030506, Lig4, Ligase4, [RH, Score=253, Expect=3e-70]} {Celegans: WBGene00002985, lig-1, DNA ligase 1, [Score=134, Expect=7e-32]} {Smed: dd_Smed_v6_11363_0_1, dd_Smed_v6_11363_0_1, [RH, Score=566, Expect=0.0]} {RNA1509_4940} {RNA1310_2815, RNA1509_4940} {RNA1509_4940, RNA815_3459}

MligTC455_45764

930

19.37

Mlig455_050557

Neo: -

Age: -

Region-enriched R4: 1.852/0.01043

ZMIZ1

0.95

0.950

Mlig455_050557 {REF} {Length: 1882} {TRANSSPLICED} {Pfam: MIZ/SP-RING zinc finger [PF02891.22, score=75.5]; Zinc-finger of the MIZ type in Nse subunit [PF11789.10, score=19.3]} {Human: ENSG00000108175, ZMIZ1, zinc finger MIZ-type containing 1, [RH, Score=264, Expect=1e-77]; ENSG00000122515, ZMIZ2, zinc finger MIZ-type containing 2, [RH, Score=263, Expect=6e-78]} {Mouse: ENSMUSG00000007817, Zmiz1, zinc finger, MIZ-type containing 1, [RH, Score=263, Expect=1e-77]; ENSMUSG00000041164, Zmiz2, zinc finger, MIZ-type containing 2, [RH, Score=263, Expect=4e-78]} {Dmel: FBgn0026160, tna, tonalli, [RH, Score=243, Expect=3e-70]} {Celegans: WBGene00001574, gei-17, E3 SUMO-protein ligase gei-17, [Score=82.8, Expect=1e-16]} {Smed: dd_Smed_v6_10016_0_1, dd_Smed_v6_10016_0_1, [RH, Score=119, Expect=3e-28]} {RNA1509_52556} {RNA1310_13483} {RNA815_5821}