Data search
Results for MligTC455_25748
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_25748 | 87 | 1.80 | Mlig455_049880 | Neo: - Age: - |
Mlig455_049880 {REF} {Length: 2051} {TRANSSPLICED} {RNA1509_37722} {RNA1310_19425.1} {RNA815_8757.1} |
Cumulative graph for MligTC455_25748
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -2.622 | 1.696 | 0.65861 | 1.00000 | |
| RegionR2 | 0.47 | 1.696 | 0.69808 | 1.00000 | |
| RegionR3 | -0.557 | 1.696 | 0.96983 | 1.00000 | |
| RegionR4 | -0.144 | 1.696 | 0.89564 | 1.00000 | |
| RegionR5 | 0.537 | 1.696 | 0.58516 | 0.94375 | |
| RegionR6 | -1.851 | 1.696 | 0.99976 | 1.00000 | |
| RegionR7 | 1.757 | 1.696 | 0.25595 | 0.88300 | |
| RegionR8 | 2.411 | 1.696 | 0.19970 | 0.79706 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 2.553 | 1.696 | 0.69507 | 1.00000 | |
| RegenerationR2 | 1.789 | 1.696 | 0.01632 | 0.20994 | |
| RegenerationR3 | 1.778 | 1.696 | 0.11108 | 0.52459 | |
| RegenerationR4 | 1.483 | 1.696 | 0.12327 | 0.53350 | |
| RegenerationR5 | 1.307 | 1.696 | 0.10392 | 0.48857 | |
| RegenerationR6 | 3.042 | 1.696 | 0.02332 | 0.18965 | |
| RegenerationBL | 0.262 | 1.696 | 0.79388 | 1.00000 | |
| RegenerationTP | 0.421 | 1.696 | 0.73545 | 1.00000 |
Genes with expression patterns similar to MligTC455_25748
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_25748 | 87 | 1.8 | Mlig455_049880 | Neo: - Age: - |
3 | - | - | - | 1.000 | 1.000 | 1.000 | Mlig455_049880 {REF} {Length: 2051} {TRANSSPLICED} {RNA1509_37722} {RNA1310_19425.1} {RNA815_8757.1} | |
| 2. | MligTC455_29594 | 106 | 2.21 | Mlig455_031563 | Neo: - Age: - |
MAP3K1 | 1.664 | - | - | - | 0.951 | - | 0.713 | Mlig455_031563 {REF} {Length: 7816} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=215.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=138.1]; Ring finger domain [PF13639.8, score=34.5]; Fungal protein kinase [PF17667.3, score=24.1]; PHD-finger [PF00628.31, score=22.0]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=19.9]} {Human: ENSG00000095015, MAP3K1, mitogen-activated protein kinase kinase kinase 1, [RH, Score=372, Expect=6e-107]} {Mouse: ENSMUSG00000021754, Map3k1, mitogen-activated protein kinase kinase kinase 1, [RH, Score=371, Expect=1e-106]} {Dmel: FBgn0014006, Ask1, Apoptotic signal-regulating kinase 1, [Score=183, Expect=3e-46]} {Celegans: WBGene00003822, nsy-1, Mitogen-activated protein kinase kinase kinase nsy-1, [Score=179, Expect=5e-45]} {Smed: dd_Smed_v6_5198_0_1, dd_Smed_v6_5198_0_1, [RH, Score=301, Expect=1e-84]} {RNA1509_11218} {RNA1310_1802.1} {RNA815_10176} |
| 3. | MligTC455_19313 | 196 | 4.08 | Mlig455_030602 | Neo: - Age: Up-Down-Up |
ANK1 | 0.988 | - | - | - | 0.988 | - | - | Mlig455_030602 {REF} {Length: 5400} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=318.6]; Ankyrin repeat [PF00023.32, score=236.6]; Ankyrin repeats (many copies) [PF13637.8, score=217.8]; Ankyrin repeat [PF13606.8, score=217.0]; Ankyrin repeats (many copies) [PF13857.8, score=210.1]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=276, Expect=4e-75]; ENSG00000145362, ANK2, ankyrin 2, [Score=270, Expect=6e-73]; ENSG00000151150, ANK3, ankyrin 3, [Score=265, Expect=3e-71]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=268, Expect=2e-72]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=266, Expect=2e-72]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=263, Expect=6e-71]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=270, Expect=8e-73]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=253, Expect=6e-68]} {Smed: dd_Smed_v6_2072_0_29, dd_Smed_v6_2072_0_29, [Score=276, Expect=8e-78]} {RNA1509_11953, RNA1509_50434, RNA1509_59549, RNA1509_59927} {RNA1310_1362.1, RNA1509_11953, RNA1509_50434, RNA1509_59549, RNA1509_59927} {RNA1509_11953, RNA1509_50434, RNA1509_59549, RNA1509_59927, RNA815_444.1} |
| 4. | MligTC455_24914 | 779 | 16.22 | Mlig455_032658 | Neo: - Age: Up-Down-Up |
HECTD1 | 0.96 | - | - | - | 0.960 | - | - | Mlig455_032658 {REF} {Length: 7397} {Pfam: HECT-domain (ubiquitin-transferase) [PF00632.27, score=218.1]; Basic tilted helix bundle domain [PF18410.3, score=41.8]; Mib_herc2 [PF06701.15, score=33.7]; Sad1 / UNC-like C-terminal [PF07738.15, score=26.0]} {Human: ENSG00000092148, HECTD1, HECT domain E3 ubiquitin protein ligase 1, [RH, Score=568, Expect=0.0]} {Mouse: ENSMUSG00000035247, Hectd1, HECT domain E3 ubiquitin protein ligase 1, [Score=572, Expect=4e-171]} {Dmel: FBgn0032208, Ufd4, Ubiquitin fusion-degradation 4-like, [RH, Score=437, Expect=5e-126]} {Celegans: WBGene00016405, hecd-1, HECtD1 ubiquitin ligase homolog, [RH, Score=419, Expect=3e-120]} {Smed: dd_Smed_v6_2824_0_1, dd_Smed_v6_2824_0_1, [Score=400, Expect=4e-114]} {RNA1509_31203, RNA1509_37314, RNA1509_48176, RNA1509_52878, RNA1509_58132, RNA1509_8379} {RNA1310_217, RNA1509_31203, RNA1509_37314, RNA1509_48176, RNA1509_52878, RNA1509_58132, RNA1509_8379} {RNA1509_31203, RNA1509_37314, RNA1509_48176, RNA1509_52878, RNA1509_58132, RNA1509_8379, RNA815_1993.1} |
| 5. | MligTC455_08655 | 13 | 0.27 | Mlig455_045048 | Neo: - Age: - Region-enriched R5: 1.573/0.03280 |
0.959 | - | - | - | 0.959 | - | - | Mlig455_045048 {REF} {Length: 2465} {RNA1509_24492} {RNA1310_38634} {RNA815_43546} | |
| 6. | MligTC455_16345 | 412 | 8.58 | Mlig455_024407 | Neo: Irradiation Age: Up-Down-Down Region-specific R4: 4.084 Region-enriched R4: 2.498/0.00111 Regeneration-downregulated R4: -2.680 Regeneration-depleted R4: -2.680 |
SH3KBP1 | 0.958 | - | - | - | 0.958 | - | - | Mlig455_024407 {REF} {Length: 2853} {TRANSSPLICED} {Pfam: Variant SH3 domain [PF14604.8, score=110.0]; Variant SH3 domain [PF07653.19, score=84.8]; SH3 domain [PF00018.30, score=84.0]} {Human: ENSG00000147010, SH3KBP1, SH3 domain containing kinase binding protein 1, [Score=94.7, Expect=2e-20]} {Mouse: ENSMUSG00000040990, Sh3kbp1, SH3-domain kinase binding protein 1, [Score=92.8, Expect=8e-20]} {Dmel: FBgn0027598, cindr, CIN85 and CD2AP related, [RH, Score=77.0, Expect=7e-15]} {Celegans: WBGene00021549, Y44E3A.4, [Score=70.5, Expect=7e-13]} {Smed: dd_Smed_v6_1522_0_1, dd_Smed_v6_1522_0_1, [RH, Score=139, Expect=2e-36]} {RNA1509_22359, RNA1509_3398, RNA1509_44142} {RNA1310_6551, RNA1509_22359, RNA1509_3398, RNA1509_44142} {RNA1509_22359, RNA1509_3398, RNA1509_44142, RNA815_17932} |
Berezikov Lab - 2020-2021 © ERIBA