M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_26195

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_26195 714 14.87 Mlig455_033075

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=1.206

 PEF1 Mlig455_033075 {REF} {Length: 2745} {Pfam: EF-hand domain [PF13405.8, score=57.7]; EF hand [PF00036.34, score=54.7]; EF-hand domain pair [PF13499.8, score=52.8]; EF hand [PF13202.8, score=43.0]; EF-hand domain pair [PF13833.8, score=35.0]} {Human: ENSG00000162517, PEF1, penta-EF-hand domain containing 1, [Score=93.6, Expect=7e-22]} {Mouse: ENSMUSG00000028779, Pef1, penta-EF hand domain containing 1, [Score=94.4, Expect=2e-22]} {Dmel: FBgn0033529, CG17765, [Score=97.8, Expect=2e-24]} {Celegans: WBGene00019770, M04F3.4, [Score=84.0, Expect=9e-20]} {Smed: dd_Smed_v6_6190_0_1, dd_Smed_v6_6190_0_1, [Score=96.7, Expect=1e-24]} {RNA1509_8928} {RNA1310_11493, RNA1509_8928} {RNA1509_8928, RNA815_7652.1}

Cumulative graph for MligTC455_26195

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.768 3.97 0.41849 1.00000
RegionR2 -0.718 3.97 0.09189 0.37189
RegionR3 -0.497 3.97 0.18037 0.71129
RegionR4 0.923 3.97 0.03845 0.16128
RegionR5 -0.315 3.97 0.38529 0.74031
RegionR6 -0.619 3.97 0.11644 0.62238
RegionR7 -0.187 3.97 0.70081 1.00000
RegionR8 0.645 3.97 0.21905 0.82612

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.766 3.97 0.25034 0.96639
RegenerationR2 -0.042 3.97 0.91131 1.00000
RegenerationR3 -0.003 3.97 0.99216 1.00000
RegenerationR4 -0.501 3.97 0.24630 0.69431
RegenerationR5 0.054 3.97 0.89738 1.00000
RegenerationR6 0.123 3.97 0.79454 0.97449
RegenerationBL 0.578 3.97 0.19079 0.52475
RegenerationTP -0.261 3.97 0.60535 0.96402


Genes with expression patterns similar to MligTC455_26195

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_26195 714 14.87 Mlig455_033075

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=1.206

 PEF1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_033075 {REF} {Length: 2745} {Pfam: EF-hand domain [PF13405.8, score=57.7]; EF hand [PF00036.34, score=54.7]; EF-hand domain pair [PF13499.8, score=52.8]; EF hand [PF13202.8, score=43.0]; EF-hand domain pair [PF13833.8, score=35.0]} {Human: ENSG00000162517, PEF1, penta-EF-hand domain containing 1, [Score=93.6, Expect=7e-22]} {Mouse: ENSMUSG00000028779, Pef1, penta-EF hand domain containing 1, [Score=94.4, Expect=2e-22]} {Dmel: FBgn0033529, CG17765, [Score=97.8, Expect=2e-24]} {Celegans: WBGene00019770, M04F3.4, [Score=84.0, Expect=9e-20]} {Smed: dd_Smed_v6_6190_0_1, dd_Smed_v6_6190_0_1, [Score=96.7, Expect=1e-24]} {RNA1509_8928} {RNA1310_11493, RNA1509_8928} {RNA1509_8928, RNA815_7652.1}
2. MligTC455_18205 1930 40.21 Mlig455_013121

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.975

 CALM3 1.79 - - 0.958 - - 0.832 Mlig455_013121 {REF} {Length: 709} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=52.2]; EF-hand domain pair [PF13833.8, score=37.1]; EF-hand domain [PF14658.8, score=37.0]; EF-hand domain [PF13405.8, score=25.7]; EF hand [PF00036.34, score=25.5]; Uncharacterised protein family (UPF0154) [PF03672.15, score=22.2]} {Human: ENSG00000160014, CALM3, calmodulin 3, [Score=137, Expect=6e-42]; ENSG00000143933, CALM2, calmodulin 2, [Score=137, Expect=6e-42]; ENSG00000198668, CALM1, calmodulin 1, [Score=137, Expect=6e-42]} {Mouse: ENSMUSG00000019370, Calm3, calmodulin 3, [Score=137, Expect=4e-42]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=137, Expect=4e-42]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=137, Expect=4e-42]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=137, Expect=3e-42]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=136, Expect=8e-42]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=136, Expect=6e-42]} {RNA1509_10890, RNA1509_18669, RNA1509_43138, RNA1509_48258} {RNA1310_49762.1, RNA1509_10890, RNA1509_18669, RNA1509_43138, RNA1509_48258} {RNA1509_10890, RNA1509_18669, RNA1509_43138, RNA1509_48258, RNA815_25161.1}
3. MligTC455_40031 618 12.87 Mlig455_051506, Mlig455_051543

Neo: -

Age: -

 TBX2 1.677 - - 0.726 - 0.951 -

Mlig455_051506 {REF} {Length: 3347} {Pfam: T-box [PF00907.24, score=272.0]} {Human: ENSG00000121068, TBX2, T-box 2, [RH, Score=377, Expect=2e-119]; ENSG00000135111, TBX3, T-box 3, [RH, Score=367, Expect=1e-115]} {Mouse: ENSMUSG00000018604, Tbx3, T-box 3, [RH, Score=376, Expect=3e-119]; ENSMUSG00000000093, Tbx2, T-box 2, [RH, Score=375, Expect=9e-119]} {Dmel: FBgn0000179, bi, bifid, [RH, Score=359, Expect=2e-110]} {Celegans: WBGene00006543, tbx-2, T-box protein 2, [RH, Score=331, Expect=7e-106]} {Smed: dd_Smed_v6_11693_0_1, dd_Smed_v6_11693_0_1, [RH, Score=404, Expect=3e-131]} {RNA1509_33164} {RNA1310_6016} {RNA815_26812}

Mlig455_051543 {REF} {Length: 3407} {Pfam: T-box [PF00907.24, score=272.0]} {Human: ENSG00000121068, TBX2, T-box 2, [RH, Score=377, Expect=1e-119]; ENSG00000135111, TBX3, T-box 3, [RH, Score=367, Expect=1e-115]} {Mouse: ENSMUSG00000018604, Tbx3, T-box 3, [RH, Score=376, Expect=3e-119]; ENSMUSG00000000093, Tbx2, T-box 2, [RH, Score=374, Expect=1e-118]} {Dmel: FBgn0000179, bi, bifid, [RH, Score=359, Expect=1e-110]} {Celegans: WBGene00006543, tbx-2, T-box protein 2, [RH, Score=331, Expect=7e-106]} {Smed: dd_Smed_v6_11693_0_1, dd_Smed_v6_11693_0_1, [RH, Score=404, Expect=2e-131]} {RNA1509_33164} {RNA1310_6016, RNA1509_33164} {RNA1509_33164, RNA815_26812}
4. MligTC455_41235 7502 156.3 Mlig455_055486, Mlig455_055506

Neo: -

Age: -

 DLG1 1.659 - - - - 0.955 0.704

Mlig455_055486 {REF} {Length: 1950} {Pfam: PDZ domain [PF00595.26, score=141.2]; L27_1 [PF09058.12, score=96.6]; PDZ domain [PF17820.3, score=61.7]; PDZ domain [PF13180.8, score=41.4]} {Human: ENSG00000075711, DLG1, discs large MAGUK scaffold protein 1, [RH, Score=268, Expect=2e-86]} {Mouse: ENSMUSG00000020886, Dlg4, discs large MAGUK scaffold protein 4, [Score=206, Expect=2e-59]} {Dmel: FBgn0001624, dlg1, discs large 1, [Score=235, Expect=3e-69]} {Celegans: WBGene00001006, dlg-1, Drosophila Discs LarGe homolog; MAGUK protein DLG-1; SAP97-like protein DLG-1, [Score=151, Expect=1e-39]} {Smed: dd_Smed_v6_3493_1_1, dd_Smed_v6_3493_1_1, [RH, Score=179, Expect=6e-52]} {RNA1509_5151} {RNA1310_3856.2} {RNA815_5387.1}

Mlig455_055506 {REF} {Length: 1909} {Pfam: PDZ domain [PF00595.26, score=141.2]; L27_1 [PF09058.12, score=96.6]; PDZ domain [PF17820.3, score=61.7]; PDZ domain [PF13180.8, score=41.4]} {Human: ENSG00000075711, DLG1, discs large MAGUK scaffold protein 1, [RH, Score=268, Expect=2e-86]} {Mouse: ENSMUSG00000020886, Dlg4, discs large MAGUK scaffold protein 4, [Score=206, Expect=2e-59]} {Dmel: FBgn0001624, dlg1, discs large 1, [Score=235, Expect=3e-69]} {Celegans: WBGene00001006, dlg-1, Drosophila Discs LarGe homolog; MAGUK protein DLG-1; SAP97-like protein DLG-1, [Score=151, Expect=1e-39]} {Smed: dd_Smed_v6_3493_1_1, dd_Smed_v6_3493_1_1, [RH, Score=179, Expect=6e-52]} {RNA1509_4600, RNA1509_5151} {RNA1310_3856.2, RNA1509_4600, RNA1509_5151} {RNA1509_4600, RNA1509_5151, RNA815_5387.1}
5. MligTC455_41785 1383 28.81 Mlig455_026252, Mlig455_028777, Mlig455_070808

Neo: -

Age: Down-Up-Down

 TSPAN7 0.977 - - - 0.977 - -

Mlig455_026252 {REF} {Length: 1542} {TRANSSPLICED} {Pfam: Tetraspanin family [PF00335.22, score=125.3]} {Human: ENSG00000156298, TSPAN7, tetraspanin 7, [RH, Score=76.6, Expect=2e-15]} {Mouse: ENSMUSG00000030351, Tspan11, tetraspanin 11, [Score=84.0, Expect=2e-18]} {Dmel: FBgn0036769, Tsp74F, Tetraspanin 74F, [Score=73.9, Expect=5e-15]} {Celegans: WBGene00006643, tsp-17, TetraSPanin family, [Score=51.6, Expect=2e-07]} {Smed: dd_Smed_v6_13296_0_1, dd_Smed_v6_13296_0_1, [RH, Score=120, Expect=2e-31]} {RNA1509_34180} {RNA1310_20573} {RNA815_8417}

Mlig455_028777 {REF} {Length: 1540} {TRANSSPLICED} {Pfam: Tetraspanin family [PF00335.22, score=125.3]} {Human: ENSG00000156298, TSPAN7, tetraspanin 7, [RH, Score=76.6, Expect=2e-15]} {Mouse: ENSMUSG00000030351, Tspan11, tetraspanin 11, [Score=84.0, Expect=2e-18]} {Dmel: FBgn0036769, Tsp74F, Tetraspanin 74F, [Score=73.9, Expect=5e-15]} {Celegans: WBGene00006643, tsp-17, TetraSPanin family, [Score=51.6, Expect=2e-07]} {Smed: dd_Smed_v6_13296_0_1, dd_Smed_v6_13296_0_1, [RH, Score=120, Expect=2e-31]} {RNA1509_34180} {RNA1310_20573, RNA1509_34180} {RNA1509_34180, RNA815_8417}

Mlig455_070808 {REF} {Length: 991} {Smed: dd_Smed_v6_13296_0_1, dd_Smed_v6_13296_0_1, [Score=40.0, Expect=9e-06]} {RNA1509_34180} {RNA1310_20573} {RNA815_8417}
6. MligTC455_32346 554 11.54 Mlig455_059091

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.354

Region-enriched R5: 1.264/0.01600

 PLCXD3 0.954 - - - - 0.954 - Mlig455_059091 {REF} {Length: 2246} {TRANSSPLICED} {Pfam: Phosphatidylinositol-specific phospholipase C, X domain [PF00388.21, score=22.1]} {Human: ENSG00000182836, PLCXD3, phosphatidylinositol specific phospholipase C X domain containing 3, [RH, Score=179, Expect=4e-53]} {Mouse: ENSMUSG00000049148, Plcxd3, phosphatidylinositol-specific phospholipase C, X domain containing 3, [RH, Score=181, Expect=1e-53]} {Dmel: FBgn0032845, CG10747, [Score=114, Expect=1e-28]} {Celegans: WBGene00018184, F38E9.1, [Score=104, Expect=2e-24]} {Smed: dd_Smed_v6_7380_0_1, dd_Smed_v6_7380_0_1, [RH, Score=165, Expect=2e-48]} {RNA1509_14888, RNA1509_25027} {RNA1310_31838.1, RNA1509_25027} {RNA1509_25027, RNA815_7591.1}
7. MligTC455_50338 421 8.78 Mlig455_046702

Neo: -

Age: -

 SEPT4 0.951 - - - - 0.951 - Mlig455_046702 {REF} {Length: 3017} {Pfam: Septin [PF00735.20, score=395.0]; 50S ribosome-binding GTPase [PF01926.25, score=37.9]; RsgA GTPase [PF03193.18, score=35.2]; Dynamin family [PF00350.25, score=23.2]; Elongation factor Tu GTP binding domain [PF00009.29, score=22.3]; AIG1 family [PF04548.18, score=20.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=19.5]; ABC transporter [PF00005.29, score=19.2]; AAA domain [PF13479.8, score=18.8]; Virulence-associated protein E [PF05272.13, score=18.1]} {Human: ENSG00000108387, SEPT4, septin 4, [Score=433, Expect=2e-148]; ENSG00000284874, SEPT5-GP1BB, SEPT5-GP1BB readthrough, [Score=432, Expect=8e-150]; ENSG00000184702, SEPT5, septin 5, [Score=432, Expect=7e-150]} {Mouse: ENSMUSG00000020486, Sept4, septin 4, [Score=431, Expect=3e-149]; ENSMUSG00000072214, Sept5, septin 5, [Score=425, Expect=4e-147]; ENSMUSG00000116594, AC133488.1, novel protein, [Score=412, Expect=4e-142]} {Dmel: FBgn0259923, Sep4, Septin 4, [Score=424, Expect=6e-147]} {Celegans: WBGene00006793, unc-59, [Score=284, Expect=5e-91]} {Smed: dd_Smed_v6_1717_0_1, dd_Smed_v6_1717_0_1, [Score=467, Expect=7e-163]} {RNA1509_20078} {RNA1310_19211} {RNA815_7267}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA