M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_26447

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_26447 1762 36.70 Mlig455_039707

Neo: -

Age: Down-Up-Up

 UBE2D1 Mlig455_039707 {REF} {Length: 2452} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=169.4]} {Human: ENSG00000072401, UBE2D1, ubiquitin conjugating enzyme E2 D1, [Score=209, Expect=1e-63]; ENSG00000131508, UBE2D2, ubiquitin conjugating enzyme E2 D2, [Score=204, Expect=5e-62]; ENSG00000109332, UBE2D3, ubiquitin conjugating enzyme E2 D3, [Score=203, Expect=2e-61]; ENSG00000078967, UBE2D4, ubiquitin conjugating enzyme E2 D4 (putative), [Score=202, Expect=5e-61]} {Mouse: ENSMUSG00000019927, Ube2d1, ubiquitin-conjugating enzyme E2D 1, [Score=209, Expect=9e-64]; ENSMUSG00000091896, Ube2d2a, ubiquitin-conjugating enzyme E2D 2A, [Score=204, Expect=4e-62]; ENSMUSG00000078578, Ube2d3, ubiquitin-conjugating enzyme E2D 3, [Score=203, Expect=1e-61]} {Dmel: FBgn0011217, eff, effete, [Score=209, Expect=5e-64]} {Celegans: WBGene00002344, let-70, Ubiquitin-conjugating enzyme E2 2, [Score=206, Expect=8e-63]} {Smed: dd_Smed_v6_153_0_1, dd_Smed_v6_153_0_1, [Score=199, Expect=1e-60]} {RNA1509_14822} {RNA1310_45296} {RNA815_10242}

Cumulative graph for MligTC455_26447

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.033 5.277 0.22434 0.86800
RegionR2 -0.368 5.277 0.44830 0.83653
RegionR3 0.03 5.277 0.94120 1.00000
RegionR4 0.859 5.277 0.08775 0.28175
RegionR5 -0.05 5.277 0.90786 1.00000
RegionR6 0.233 5.277 0.57654 1.00000
RegionR7 0.055 5.277 0.90073 1.00000
RegionR8 0.273 5.277 0.57760 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.571 5.277 0.61781 1.00000
RegenerationR2 -0.861 5.277 0.09496 0.48961
RegenerationR3 -0.353 5.277 0.50458 0.85896
RegenerationR4 -0.416 5.277 0.45359 0.84396
RegenerationR5 -0.248 5.277 0.63581 0.92495
RegenerationR6 -0.181 5.277 0.73339 0.94282
RegenerationBL -0.792 5.277 0.11494 0.40105
RegenerationTP 0.317 5.277 0.52739 0.91860


Genes with expression patterns similar to MligTC455_26447

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_26447 1762 36.7 Mlig455_039707

Neo: -

Age: Down-Up-Up

 UBE2D1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_039707 {REF} {Length: 2452} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=169.4]} {Human: ENSG00000072401, UBE2D1, ubiquitin conjugating enzyme E2 D1, [Score=209, Expect=1e-63]; ENSG00000131508, UBE2D2, ubiquitin conjugating enzyme E2 D2, [Score=204, Expect=5e-62]; ENSG00000109332, UBE2D3, ubiquitin conjugating enzyme E2 D3, [Score=203, Expect=2e-61]; ENSG00000078967, UBE2D4, ubiquitin conjugating enzyme E2 D4 (putative), [Score=202, Expect=5e-61]} {Mouse: ENSMUSG00000019927, Ube2d1, ubiquitin-conjugating enzyme E2D 1, [Score=209, Expect=9e-64]; ENSMUSG00000091896, Ube2d2a, ubiquitin-conjugating enzyme E2D 2A, [Score=204, Expect=4e-62]; ENSMUSG00000078578, Ube2d3, ubiquitin-conjugating enzyme E2D 3, [Score=203, Expect=1e-61]} {Dmel: FBgn0011217, eff, effete, [Score=209, Expect=5e-64]} {Celegans: WBGene00002344, let-70, Ubiquitin-conjugating enzyme E2 2, [Score=206, Expect=8e-63]} {Smed: dd_Smed_v6_153_0_1, dd_Smed_v6_153_0_1, [Score=199, Expect=1e-60]} {RNA1509_14822} {RNA1310_45296} {RNA815_10242}
2. MligTC455_26448 1661 34.6 Mlig455_039764

Neo: -

Age: Up-Down-Up

 UBE2D1 4.914 0.963 0.981 0.984 0.996 0.990 - Mlig455_039764 {REF} {Length: 850} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=176.4]} {Human: ENSG00000072401, UBE2D1, ubiquitin conjugating enzyme E2 D1, [Score=218, Expect=8e-74]; ENSG00000131508, UBE2D2, ubiquitin conjugating enzyme E2 D2, [Score=214, Expect=4e-72]; ENSG00000109332, UBE2D3, ubiquitin conjugating enzyme E2 D3, [Score=213, Expect=6e-72]; ENSG00000078967, UBE2D4, ubiquitin conjugating enzyme E2 D4 (putative), [Score=211, Expect=4e-71]} {Mouse: ENSMUSG00000019927, Ube2d1, ubiquitin-conjugating enzyme E2D 1, [Score=218, Expect=5e-74]; ENSMUSG00000091896, Ube2d2a, ubiquitin-conjugating enzyme E2D 2A, [Score=214, Expect=3e-72]; ENSMUSG00000078578, Ube2d3, ubiquitin-conjugating enzyme E2D 3, [Score=213, Expect=4e-72]; ENSMUSG00000063447, Ube2d2b, ubiquitin-conjugating enzyme E2D 2B, [Score=208, Expect=4e-70]} {Dmel: FBgn0011217, eff, effete, [Score=218, Expect=3e-74]} {Celegans: WBGene00002344, let-70, Ubiquitin-conjugating enzyme E2 2, [Score=215, Expect=6e-73]} {Smed: dd_Smed_v6_153_0_1, dd_Smed_v6_153_0_1, [Score=210, Expect=4e-71]} {RNA1509_25539, RNA1509_30467} {RNA1310_37179, RNA1509_25539, RNA1509_30467} {RNA1509_25539, RNA1509_30467, RNA815_19556.2}
3. MligTC455_22670 190 3.96 Mlig455_034285

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_034285 {REF} {Length: 2396} {RNA1509_55358} {RNA1310_19226} {RNA815_1882}
4. MligTC455_26494 37480 780.83 Mlig455_012450, Mlig455_012452, Mlig455_012453

Neo: -

Age: logFC(26M/2M)=0.332

Region-enriched R4: 1.161/0.04853

 0.95 - - - - 0.950 -

Mlig455_012450 {REF} {Length: 639} {TRANSSPLICED} {RNA1509_39210} {RNA1310_67854.1} {RNA815_3012.1}

Mlig455_012452 {REF} {Length: 789} {TRANSSPLICED} {RNA1509_39210} {RNA1310_67854.1} {RNA815_3012.1}

Mlig455_012453 {REF} {Length: 521} {TRANSSPLICED} {RNA1509_39210} {RNA1310_67854.1} {RNA815_3012.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA