M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_26891

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_26891 1356 28.25 Mlig455_040542

Neo: -

Age: logFC(26M/2M)=0.787

 Mlig455_040542 {REF} {Length: 2860} {RNA1509_731} {RNA1310_18655} {RNA815_9260.1}

Cumulative graph for MligTC455_26891

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.172 4.914 0.85112 1.00000
RegionR2 0.59 4.914 0.19450 0.55169
RegionR3 0.223 4.914 0.56018 1.00000
RegionR4 -0.149 4.914 0.76242 1.00000
RegionR5 -0.925 4.914 0.02726 0.12089
RegionR6 -0.745 4.914 0.08929 0.55051
RegionR7 -0.042 4.914 0.93551 1.00000
RegionR8 0.876 4.914 0.11179 0.61987

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.814 4.914 0.42200 1.00000
RegenerationR2 0.012 4.914 0.97981 1.00000
RegenerationR3 0.318 4.914 0.49169 0.85455
RegenerationR4 0.204 4.914 0.67490 0.94415
RegenerationR5 -0.016 4.914 0.97707 1.00000
RegenerationR6 -0.333 4.914 0.53526 0.83013
RegenerationBL -0.538 4.914 0.30239 0.66590
RegenerationTP -0.458 4.914 0.38951 0.82234


Genes with expression patterns similar to MligTC455_26891

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_26891 1356 28.25 Mlig455_040542

Neo: -

Age: logFC(26M/2M)=0.787

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_040542 {REF} {Length: 2860} {RNA1509_731} {RNA1310_18655} {RNA815_9260.1}
2. MligTC455_26884 639 13.32 Mlig455_005793

Neo: -

Age: -

 5.723 0.889 0.951 0.992 0.948 0.951 0.992 Mlig455_005793 {REF} {Length: 4435} {Pfam: PAN domain [PF14295.8, score=18.8]} {RNA1509_16790} {RNA1310_35281} {RNA815_9260.1}
3. MligTC455_26890 709 14.77 Mlig455_018271

Neo: -

Age: logFC(26M/2M)=0.639

 5.694 0.868 0.965 0.985 0.930 0.951 0.995 Mlig455_018271 {REF} {Length: 1102} {RNA1509_731} {RNA1310_41414} {RNA815_9260.1}
4. MligTC455_12677 614 12.78 Mlig455_013708

Neo: -

Age: Up-Down-Up

 5.692 0.882 0.962 0.995 0.934 0.953 0.966 Mlig455_013708 {REF} {Length: 540} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=25.4]} {RNA1509_16790} {RNA1310_41414} {RNA815_9260.1}
5. MligTC455_30928 4491 93.55 Mlig455_011414, Mlig455_013005, Mlig455_024311, Mlig455_030591, Mlig455_031789, Mlig455_036852, Mlig455_037240

Neo: -

Age: Up-Down-Up

 5.627 0.928 0.947 0.991 0.943 0.961 0.857

Mlig455_011414 {REF} {Length: 1230} {NoTransDecoderORF} {RNA1509_731} {RNA1310_33739.1} {RNA815_9260.1}

Mlig455_013005 {REF} {Length: 2176} {RNA1509_16883} {RNA1310_7853.1} {RNA815_5910}

Mlig455_024311 {REF} {Length: 1359} {RNA1509_731} {RNA1310_33739.1} {RNA815_9260.1}

Mlig455_030591 {REF} {Length: 1864} {NoTransDecoderORF} {RNA1509_731} {RNA1310_18655} {RNA815_9260.1}

Mlig455_031789 {REF} {Length: 726} {NoTransDecoderORF} {RNA1509_16790} {RNA1310_41414} {RNA815_9260.1}

Mlig455_036852 {REF} {Length: 2316} {Pfam: Mab-21 protein [PF03281.16, score=23.4]} {RNA1509_43989} {RNA1310_12108.1} {RNA815_2400.1}

Mlig455_037240 {REF} {Length: 1752} {NoTransDecoderORF} {RNA1509_16790} {RNA1310_41414} {RNA815_9260.1}
6. MligTC455_26886 933 19.43 Mlig455_013004

Neo: -

Age: logFC(26M/2M)=0.559

 4.573 0.888 0.873 0.961 0.898 0.953 - Mlig455_013004 {REF} {Length: 2210} {RNA1509_15726, RNA1509_16790, RNA1509_48410, RNA1509_51149, RNA1509_6921, RNA1509_731} {RNA1310_18655, RNA1509_15726, RNA1509_16790, RNA1509_48410, RNA1509_51149, RNA1509_6921, RNA1509_731} {RNA1509_15726, RNA1509_16790, RNA1509_48410, RNA1509_51149, RNA1509_6921, RNA1509_731, RNA815_9260.1}
7. MligTC455_26885 951 19.8 Mlig455_015762

Neo: -

Age: logFC(26M/2M)=1.958

 4.561 0.865 0.891 0.972 0.879 0.954 - Mlig455_015762 {REF} {Length: 2898} {RNA1509_731} {RNA1310_18655} {RNA815_9260.1}
8. MligTC455_47807 2664 55.5 Mlig455_050143

Neo: -

Age: -

Region-specific R2: 3.807

Region-enriched R2: 2.561/0.00001

 2.448 - - 0.977 0.723 0.748 - Mlig455_050143 {REF} {Length: 1560} {RNA1509_1605, RNA1509_28756} {RNA1310_30659.1, RNA1509_28756} {RNA1509_28756, RNA815_13807}
9. MligTC455_47806 2724 56.76 Mlig455_033677

Neo: -

Age: -

Region-specific R2: 3.773

Region-enriched R2: 2.504/0.00005

 2.435 - - 0.960 0.726 0.749 - Mlig455_033677 {REF} {Length: 1836} {RNA1509_1605, RNA1509_16422, RNA1509_33244, RNA1509_46504} {RNA1310_30659.1, RNA1509_1605, RNA1509_16422, RNA1509_33244, RNA1509_46504} {RNA1509_1605, RNA1509_16422, RNA1509_33244, RNA1509_46504, RNA815_13807}
10. MligTC455_21588 660 13.76 Mlig455_058881

Neo: Irradiation

Age: Up-Down-Down

Region-specific R4: 4.789

Region-enriched R4: 2.871/0.00593

 GPCPD1 1.759 - - - - 0.802 0.957 Mlig455_058881 {REF} {Length: 1886} {Pfam: Glycerophosphoryl diester phosphodiesterase family [PF03009.19, score=122.5]} {Human: ENSG00000125772, GPCPD1, glycerophosphocholine phosphodiesterase 1, [Score=102, Expect=3e-23]} {Mouse: ENSMUSG00000027346, Gpcpd1, glycerophosphocholine phosphodiesterase 1, [Score=99.4, Expect=2e-22]} {Dmel: FBgn0031566, CG2818, [Score=88.2, Expect=8e-19]} {Celegans: WBGene00011511, gpcp-2, Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2, [Score=84.7, Expect=1e-17]} {Smed: dd_Smed_v6_7518_0_4, dd_Smed_v6_7518_0_4, [Score=98.2, Expect=6e-23]} {RNA1509_57811} {RNA1310_28682.1} {RNA815_14999.3}
11. MligTC455_39070 4952 103.18 Mlig455_003485

Neo: -

Age: logFC(26M/2M)=-0.261

Region-specific R2: 1.981

Region-enriched R2: 1.624/0.00042

 GSTP1 1.717 - - 0.765 0.952 - - Mlig455_003485 {REF} {Length: 1030} {TRANSSPLICED} {Pfam: Glutathione S-transferase, C-terminal domain [PF14497.8, score=56.0]; Glutathione S-transferase, N-terminal domain [PF13417.8, score=36.1]; Glutathione S-transferase, N-terminal domain [PF13409.8, score=34.1]; Glutathione S-transferase, C-terminal domain [PF00043.27, score=29.3]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=28.6]; Glutathione S-transferase N-terminal domain [PF17172.6, score=19.8]} {Human: ENSG00000084207, GSTP1, glutathione S-transferase pi 1, [Score=129, Expect=6e-37]} {Mouse: ENSMUSG00000060803, Gstp1, glutathione S-transferase, pi 1, [Score=137, Expect=2e-40]; ENSMUSG00000097830, Gstp1, glutathione S-transferase, pi 1, [Score=137, Expect=2e-40]; ENSMUSG00000038155, Gstp2, glutathione S-transferase, pi 2, [Score=134, Expect=5e-39]; ENSMUSG00000097808, Gstp2, glutathione S-transferase, pi 2, [Score=134, Expect=5e-39]} {Dmel: FBgn0010226, GstS1, Glutathione S transferase S1, [Score=84.0, Expect=2e-19]} {Celegans: WBGene00001773, gst-25, Glutathione S-Transferase, [RH, Score=139, Expect=2e-41]} {Smed: dd_Smed_v6_20_0_1, dd_Smed_v6_20_0_1, [Score=80.1, Expect=1e-18]} {RNA1509_20047, RNA1509_24823, RNA1509_26812, RNA1509_33293, RNA1509_33394, RNA1509_6039} {RNA1310_29579.1, RNA1509_20047, RNA1509_24823, RNA1509_26812, RNA1509_33293, RNA1509_33394, RNA1509_6039} {RNA1509_20047, RNA1509_24823, RNA1509_26812, RNA1509_33293, RNA1509_33394, RNA1509_6039, RNA815_15364.1}
12. MligTC455_39071 9672 201.49 Mlig455_015575

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.214

Region-enriched R2: 1.120/0.02700

 GSTP1 1.692 - - - 0.950 0.742 - Mlig455_015575 {REF} {Length: 1010} {TRANSSPLICED} {Pfam: Glutathione S-transferase, C-terminal domain [PF14497.8, score=54.9]; Glutathione S-transferase, N-terminal domain [PF13417.8, score=36.1]; Glutathione S-transferase, N-terminal domain [PF13409.8, score=34.1]; Glutathione S-transferase, C-terminal domain [PF00043.27, score=31.7]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=28.6]; Glutathione S-transferase N-terminal domain [PF17172.6, score=19.8]} {Human: ENSG00000084207, GSTP1, glutathione S-transferase pi 1, [Score=128, Expect=1e-36]} {Mouse: ENSMUSG00000097830, Gstp1, glutathione S-transferase, pi 1, [Score=137, Expect=3e-40]; ENSMUSG00000060803, Gstp1, glutathione S-transferase, pi 1, [Score=137, Expect=3e-40]; ENSMUSG00000097808, Gstp2, glutathione S-transferase, pi 2, [Score=133, Expect=1e-38]; ENSMUSG00000038155, Gstp2, glutathione S-transferase, pi 2, [Score=133, Expect=1e-38]} {Dmel: FBgn0010226, GstS1, Glutathione S transferase S1, [Score=83.6, Expect=2e-19]} {Celegans: WBGene00001773, gst-25, Glutathione S-Transferase, [RH, Score=139, Expect=2e-41]} {Smed: dd_Smed_v6_20_0_1, dd_Smed_v6_20_0_1, [Score=79.0, Expect=3e-18]} {RNA1509_2443, RNA1509_26611, RNA1509_31917, RNA1509_38325, RNA1509_49915, RNA1509_53866} {RNA1310_29579.1, RNA1509_2443, RNA1509_26611, RNA1509_31917, RNA1509_38325, RNA1509_49915, RNA1509_53866} {RNA1509_2443, RNA1509_26611, RNA1509_31917, RNA1509_38325, RNA1509_49915, RNA1509_53866, RNA815_15364.1}
13. MligTC455_44624 5094 106.13 Mlig455_057087

Neo: -

Age: logFC(26M/2M)=-0.347

 C1orf158 1.689 - - - 0.955 - 0.734 Mlig455_057087 {REF} {Length: 1117} {Human: ENSG00000157330, C1orf158, chromosome 1 open reading frame 158, [RH, Score=92.0, Expect=8e-23]} {Mouse: ENSMUSG00000028589, 1700012P22Rik, RIKEN cDNA 1700012P22 gene, [RH, Score=92.4, Expect=5e-23]} {Smed: dd_Smed_v6_6127_0_1, dd_Smed_v6_6127_0_1, [RH, Score=141, Expect=1e-42]} {RNA1509_23671, RNA1509_5886} {RNA1310_35499.1, RNA1509_23671, RNA1509_5886} {RNA1509_23671, RNA1509_5886, RNA815_44.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA